View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5950_low_5 (Length: 357)
Name: NF5950_low_5
Description: NF5950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5950_low_5 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 18143972 - 18144320
Alignment:
| Q |
1 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18143972 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
18144071 |
T |
|
| Q |
101 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144072 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttct |
18144171 |
T |
|
| Q |
201 |
aacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144172 |
aacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaa |
18144271 |
T |
|
| Q |
301 |
tgttgacctacttcgacagcagatatatcatagattaatgtgatgatgt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
18144272 |
tgttgacctacttcgacagcagatatatcatagattaatgtgttgatgt |
18144320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 48185288 - 48185628
Alignment:
| Q |
1 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |
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|
| T |
48185288 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaatagaaacaaagttccaataaacggaacccgcagac |
48185387 |
T |
|
| Q |
101 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
48185388 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctaaccagacgttggaatagtttgcggatttct |
48185487 |
T |
|
| Q |
201 |
aacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48185488 |
aacaactagaatggttgaaattaataagatagcaattacaacccaagacgtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaa |
48185587 |
T |
|
| Q |
301 |
tgttgacctacttcgacagcagatatatcatagattaatgt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185588 |
tgttgacctacttcgacagcagatatatcatagattaatgt |
48185628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 26842690 - 26842781
Alignment:
| Q |
150 |
gacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaa |
241 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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|
| T |
26842690 |
gacatattcaaagaaattctgaccaattattggaatagtttgtggatttctaacaattagaatgattgaaattaataagatagcaataacaa |
26842781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9293782 - 9294013
Alignment:
| Q |
1 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293782 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
9293881 |
T |
|
| Q |
101 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293882 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttct |
9293981 |
T |
|
| Q |
201 |
aacaactagaatggttgaaattaataagatag |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9293982 |
aacaactagaatggttgaaattaataagatag |
9294013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 9292295 - 9292394
Alignment:
| Q |
250 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcatagattaatgtgatgatgt |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
9292295 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacaacagatatatcatagattaatgtgttgatgt |
9292394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24489239 - 24489470
Alignment:
| Q |
1 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489239 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
24489338 |
T |
|
| Q |
101 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489339 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttct |
24489438 |
T |
|
| Q |
201 |
aacaactagaatggttgaaattaataagatag |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24489439 |
aacaactagaatggttgaaattaataagatag |
24489470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 231415 - 231087
Alignment:
| Q |
1 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
100 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||| |||||||||||| |||||||| |||| |
|
|
| T |
231415 |
ccatggggtaactctataattttccaaggtaaaagagcacccgaccaatttgaaacaaaaataaaaaggaacatagttccaataaagggaacccagggac |
231316 |
T |
|
| Q |
101 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||| |||||||| ||| || || || ||||| ||||| | |
|
|
| T |
231315 |
catattcttctccaatctgagttttgctcaagtctcgaataaactcaaggacatattcaaaaaaattctgcccgtcggtcgggatggtttgtggattccg |
231216 |
T |
|
| Q |
201 |
aacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaa |
300 |
Q |
| |
|
|||| ||| | |||| || ||||||| |||||| |||||||| || || ||||| || ||||| | ||||||| | ||||||||||||||||| |
|
|
| T |
231215 |
aacagctatgacaactgaacctagcaagatagtaattacgacccaagaagtgatgagtacctgggcatgaatttgaaaacctcctatttgccaatagaag |
231116 |
T |
|
| Q |
301 |
tgttgacctacttcgacagcagatatatc |
329 |
Q |
| |
|
||||| |||||||| ||| | |||||||| |
|
|
| T |
231115 |
tgttggcctacttctacacccgatatatc |
231087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 166 - 334
Target Start/End: Original strand, 34676485 - 34676652
Alignment:
| Q |
166 |
ttctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgag |
265 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34676485 |
ttctgaccggacat-ggaatagtttgcggatttctaacaattagaatggttgaaattaataagatagcaattacaacccaagaggtaataagcacttgag |
34676583 |
T |
|
| Q |
266 |
catgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcataga |
334 |
Q |
| |
|
|||||||| ||| || ||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
34676584 |
tatgcacttaaaactcacctatttgccaatgaaaatgtttccctacttccacaacagatatatcataga |
34676652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 22966007 - 22965856
Alignment:
| Q |
8 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
107 |
Q |
| |
|
|||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||||| |
|
|
| T |
22966007 |
gtaactttataattttt-aaggcaaaataatctttgaccaattcgaaacaaaaataaataaaaacaaagctccaataattgaaatccacataccatattc |
22965909 |
T |
|
| Q |
108 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaa |
160 |
Q |
| |
|
||||| ||| |||||||| || || | ||| |||||||||||||||||||||| |
|
|
| T |
22965908 |
ttctctaatttgagtttttcttacttatcgaatgaattcaaggacatattcaa |
22965856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 25377 - 25503
Alignment:
| Q |
1 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaatt-----------cgaaacaaaaataaataggaacaaagttccaataaacgg |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377 |
ccatgaggtaactttataattttccaaggcaaaagaacccctgaccaattcgaaacaaattcgaaacaaaaataaataggaacaaagttccaataaacgg |
25476 |
T |
|
| Q |
90 |
aacccacggaccatattcttctccaat |
116 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
25477 |
aacccaaggaccatattcttctccaat |
25503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 8868197 - 8868319
Alignment:
| Q |
1 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| ||| | || | ||||||||||| ||||||||| ||| |
|
|
| T |
8868197 |
ccatgagataactttataattttccaagacaaaagagcccctgacaaattccaaaaaaaaaaaaaaa--aaaagggttccaataaatggaacccactgac |
8868294 |
T |
|
| Q |
101 |
catattcttctccaatctgagtttt |
125 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
8868295 |
catattcttctccaatctgattttt |
8868319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 25719928 - 25719975
Alignment:
| Q |
85 |
aacggaacccacggaccatattcttctccaatctgagttttgctcacg |
132 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
25719928 |
aacggaacccaaggacaatattcttccccaatctgagttttgctcacg |
25719975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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