View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5950_low_7 (Length: 323)
Name: NF5950_low_7
Description: NF5950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5950_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 43504788 - 43504484
Alignment:
| Q |
1 |
cataagttctccaagacagcctataaaaacatcttatagcttctactaaaacaattggattgtgtttatcatgtgtgattggactaacttattactaatg |
100 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43504788 |
cataagttctccaagatagcttataaaaacatcttatagcttctactaaaacaattggattgtgtttatcttgtgtgattggactaacttattactaatg |
43504689 |
T |
|
| Q |
101 |
ataagcatttatgctattagaagcaaattaatcagcttatttccataaattcaatcactcatgcacagaatatagattaattaaatactttnnnnnnntc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43504688 |
ataagcatttatgctattagaagcaaattaatcagcttatttccataaattcaatcactcatgcacagaatatagattaattaaatactttaaaaaaatc |
43504589 |
T |
|
| Q |
201 |
aaccgaatgaagaacaattgaaaccctaacctcgcggccggcatgatgaacggaggaggaagacgaagaaggtttggaagcattggagtggtcgccggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43504588 |
aaccgaatgaagaacaattgaaaccctaacctcgcggccggcatgatgaacggaggaggaagacgaagaaggtttggaagcattggagtggtcgccggaa |
43504489 |
T |
|
| Q |
301 |
ttagc |
305 |
Q |
| |
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||||| |
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| T |
43504488 |
ttagc |
43504484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27043863 - 27043918
Alignment:
| Q |
1 |
cataagttctccaagacagcctataaaaacatcttatagcttctactaaaacaatt |
56 |
Q |
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|||| ||||||||||| || ||||||||||||||||||||| ||| ||||||||| |
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| T |
27043863 |
catacgttctccaagatagtttataaaaacatcttatagcttatacgaaaacaatt |
27043918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 39596633 - 39596579
Alignment:
| Q |
2 |
ataagttctccaagacagcctataaaaacatcttatagcttctactaaaacaatt |
56 |
Q |
| |
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||||| ||||||||| ||| ||||||| ||||||||||||| ||| ||||||||| |
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| T |
39596633 |
ataagctctccaagatagcttataaaaccatcttatagcttatacaaaaacaatt |
39596579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 24915087 - 24915139
Alignment:
| Q |
4 |
aagttctccaagacagcctataaaaacatcttatagcttctactaaaacaatt |
56 |
Q |
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||||||||||||||||| ||| |||||| |||||||| | ||| ||||||||| |
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| T |
24915087 |
aagttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaatt |
24915139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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