View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5950_low_9 (Length: 312)

Name: NF5950_low_9
Description: NF5950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5950_low_9
NF5950_low_9
[»] chr7 (3 HSPs)
chr7 (60-296)||(35629575-35629813)
chr7 (60-295)||(35632731-35632966)
chr7 (60-247)||(35635993-35636180)
[»] chr3 (4 HSPs)
chr3 (71-271)||(10299057-10299257)
chr3 (71-271)||(10319489-10319689)
chr3 (71-271)||(10336605-10336805)
chr3 (71-169)||(10338459-10338557)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 60 - 296
Target Start/End: Original strand, 35629575 - 35629813
Alignment:
Q  60 tcatagaaatcgatat--atacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 157  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629575 tcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 35629674  T
Q  158 atataagaaactcgtcactatatgttaaaactctagtacgcatctctggttctgctgataccacacctctagtaaatggttcaggaacttttttgaattt 257  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629675 atataagaaacttgtcactatatgttaaaactctagtacgcatctctggttctgctgataccacacctctagtaaatggttcaggaacttttttgaattt 35629774  T
Q  258 gcgaaacgattcgcatagcgtaaattcaagccttttcag 296  Q
    | ||||||||||||| |||||||||||||||||||||||    
T  35629775 gggaaacgattcgcacagcgtaaattcaagccttttcag 35629813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 295
Target Start/End: Original strand, 35632731 - 35632966
Alignment:
Q  60 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 159  Q
    ||||||| || ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| ||||||    
T  35632731 tcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaat 35632830  T
Q  160 ataagaaactcgtcactatatgttaaaactctagtacgcatctctggttctgctgataccacacctctagtaaatggttcaggaacttttttgaatttgc 259  Q
    ||||||||||  ||| | | ||||||||||||||||  |||||||||||||||||||  |||||| || ||| | |||| |||||||||||| ||||||     
T  35632831 ataagaaacttatcattctctgttaaaactctagtaaacatctctggttctgctgatggcacaccacttgtacaaggtttaggaacttttttaaatttgg 35632930  T
Q  260 gaaacgattcgcatagcgtaaattcaagccttttca 295  Q
    ||||||| |||   ||| |||||||| |||||||||    
T  35632931 gaaacgactcgtgaagcataaattcaggccttttca 35632966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 247
Target Start/End: Original strand, 35635993 - 35636180
Alignment:
Q  60 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 159  Q
    ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35635993 tcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 35636092  T
Q  160 ataagaaactcgtcactatatgttaaaactctagtacgcatctctggttctgctgataccacacctctagtaaatggttcaggaactt 247  Q
    || |||||||  ||  | | ||||||| |||||| ||||||||| || |||||||||| ||| |||||| ||||||||||||| ||||    
T  35636093 atcagaaacttatcgttctctgttaaatctctagaacgcatctccggctctgctgataacacgcctctaataaatggttcaggcactt 35636180  T

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Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 71 - 271
Target Start/End: Complemental strand, 10299257 - 10299057
Alignment:
Q  71 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 170  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10299257 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt 10299158  T
Q  171 gtcactatatgttaaaactctagtacgcatctctggttctgctgataccacacctctagtaaatggttcaggaacttttttgaatttgcgaaacgattcg 270  Q
     ||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||| |||||| |||  |||||| | || ||||||    
T  10299157 atcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatttccaatttggggaatgattcg 10299058  T
Q  271 c 271  Q
    |    
T  10299057 c 10299057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 71 - 271
Target Start/End: Complemental strand, 10319689 - 10319489
Alignment:
Q  71 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 170  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10319689 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10319590  T
Q  171 gtcactatatgttaaaactctagtacgcatctctggttctgctgataccacacctctagtaaatggttcaggaacttttttgaatttgcgaaacgattcg 270  Q
     ||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||| |||||| |||  |||||| | || ||||||    
T  10319589 atcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatttccaatttggggaatgattcg 10319490  T
Q  271 c 271  Q
    |    
T  10319489 c 10319489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 71 - 271
Target Start/End: Complemental strand, 10336805 - 10336605
Alignment:
Q  71 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 170  Q
    ||||||||| ||||||||| ||||| ||| ||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10336805 gatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10336706  T
Q  171 gtcactatatgttaaaactctagtacgcatctctggttctgctgataccacacctctagtaaatggttcaggaacttttttgaatttgcgaaacgattcg 270  Q
     ||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||| |||||| |||  |||||| | || ||||||    
T  10336705 atcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatttccaatttggggaatgattcg 10336606  T
Q  271 c 271  Q
    |    
T  10336605 c 10336605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 10338557 - 10338459
Alignment:
Q  71 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaact 169  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| |||| ||||||||| ||||||    
T  10338557 gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaact 10338459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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