View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_high_14 (Length: 337)
Name: NF5951_high_14
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 321
Target Start/End: Original strand, 11314975 - 11315292
Alignment:
| Q |
5 |
acagcgatagagccataatacacagttgattttgaaggattgatatgccgaccagaaatagctgcatactcttgaaataattgcataagttttataagac |
104 |
Q |
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| T |
11314975 |
acagagatagagccataatacacagttgattttgaaggattgatatgctgaccagaaatagctgcatactcttgtaataattgcataagttttataagac |
11315074 |
T |
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| Q |
105 |
ttatggctactacatacaatataagaggtgattaaagttaag--ataatacaccaatatcactactacatgcaatgataaatcaacgcaagcaaccaaga |
202 |
Q |
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| T |
11315075 |
ttatggctactacatacaatataagaggtgattaaagttaagatataatacaccaatatcactactacatacaaagacaaatcaacgcaagcaaccaaga |
11315174 |
T |
|
| Q |
203 |
atcatatgatacgcattcttcataattccctaactccaannnnnnnnncttccaaagaccatattaaagatataggtcacatcaaattcaccacatgcat |
302 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11315175 |
atcatatgatacgcattcttcataattccccaactccaatttttttct-ttccaaagaccatattaaagatataggtcacatcaaattcaccacatgcat |
11315273 |
T |
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| Q |
303 |
tatgatcataacaagattt |
321 |
Q |
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|||||||||| |||||||| |
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| T |
11315274 |
tatgatcatagcaagattt |
11315292 |
T |
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