View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_high_15 (Length: 332)
Name: NF5951_high_15
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 3088182 - 3088492
Alignment:
| Q |
3 |
tgaggatatgtgtgttgcaggagctatcaaaaatttcacttctcaactttctcattacaaagagggaacatctgatcgtagatgtaaggaactcatgtct |
102 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088182 |
tgaggacatgtgtgttgcaggagctatcaaaaatttcacttctcaactttctcattacaaagagggaacatctgatcgtagatgtaaggaactcatgtct |
3088281 |
T |
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| Q |
103 |
gtcatttattttccctttcagaaatttttagacttattttacttcatgatattaattactggagattttgtt-nnnnnnnnnnntaccattaactggaga |
201 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
3088282 |
gtcattttttttccctttcagaaatttttagacttattttacttcatgatattaattactggagattttgttaaaaaaaaaaaatactattaactggaga |
3088381 |
T |
|
| Q |
202 |
tattgcagataatatgaccgaggcattattgttcttgtcacacttcatgggagatattcaccaggtttgtctaaagatttttaaaatttcttttatcata |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088382 |
tattgcagataatatgaccgaggcattattgttcttgtcacacttcatgggagatattcaccaggtttgtctaaagatttttaaaatttcttttatcata |
3088481 |
T |
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| Q |
302 |
ttactcccttt |
312 |
Q |
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||||||||||| |
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| T |
3088482 |
ttactcccttt |
3088492 |
T |
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