View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5951_high_20 (Length: 298)

Name: NF5951_high_20
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5951_high_20
NF5951_high_20
[»] chr7 (11 HSPs)
chr7 (9-298)||(6430750-6431039)
chr7 (11-298)||(4509800-4510088)
chr7 (11-298)||(4511642-4511930)
chr7 (13-109)||(48490758-48490854)
chr7 (20-109)||(47674856-47674945)
chr7 (10-109)||(6047899-6047999)
chr7 (20-109)||(6593250-6593339)
chr7 (160-252)||(48490875-48490968)
chr7 (21-109)||(18390888-18390976)
chr7 (160-252)||(47674743-47674835)
chr7 (61-109)||(26214189-26214237)
[»] chr3 (30 HSPs)
chr3 (9-298)||(43402986-43403276)
chr3 (20-109)||(29812230-29812319)
chr3 (13-109)||(32892442-32892538)
chr3 (160-252)||(9635103-9635196)
chr3 (166-252)||(23198743-23198830)
chr3 (160-252)||(5258927-5259020)
chr3 (20-109)||(7763630-7763718)
chr3 (10-109)||(1619608-1619709)
chr3 (20-109)||(4599436-4599525)
chr3 (20-109)||(6717871-6717960)
chr3 (20-109)||(10057607-10057696)
chr3 (20-109)||(10059829-10059918)
chr3 (20-109)||(10062051-10062140)
chr3 (20-109)||(10064273-10064362)
chr3 (20-109)||(10066495-10066584)
chr3 (20-109)||(10210560-10210649)
chr3 (166-252)||(6717988-6718075)
chr3 (160-252)||(7763739-7763832)
chr3 (21-109)||(23198857-23198945)
chr3 (167-252)||(4599322-4599408)
chr3 (167-252)||(10210677-10210763)
chr3 (20-109)||(5259041-5259130)
chr3 (160-252)||(29812340-29812432)
chr3 (185-280)||(15824435-15824530)
chr3 (167-252)||(10057724-10057810)
chr3 (167-252)||(10059946-10060032)
chr3 (167-252)||(10062168-10062254)
chr3 (167-252)||(10064390-10064476)
chr3 (167-252)||(10066612-10066698)
chr3 (20-50)||(15824633-15824663)
[»] chr1 (18 HSPs)
chr1 (9-298)||(19753287-19753577)
chr1 (20-109)||(28222142-28222231)
chr1 (20-109)||(28221771-28221860)
chr1 (20-109)||(50168069-50168158)
chr1 (20-109)||(776433-776522)
chr1 (20-109)||(13548401-13548490)
chr1 (20-109)||(28242945-28243034)
chr1 (9-94)||(31929008-31929092)
chr1 (27-109)||(31658508-31658590)
chr1 (160-298)||(31928834-31928972)
chr1 (160-248)||(776543-776632)
chr1 (160-252)||(28221657-28221750)
chr1 (160-252)||(28222028-28222121)
chr1 (160-252)||(50167955-50168048)
chr1 (10-109)||(13126503-13126604)
chr1 (160-252)||(13548288-13548380)
chr1 (200-293)||(28243095-28243188)
chr1 (56-252)||(41139122-41139318)
[»] chr8 (10 HSPs)
chr8 (24-298)||(40220597-40220871)
chr8 (21-109)||(4732991-4733080)
chr8 (9-94)||(42436348-42436433)
chr8 (160-252)||(34255110-34255203)
chr8 (185-298)||(42436187-42436300)
chr8 (20-109)||(34255224-34255313)
chr8 (9-85)||(41365754-41365831)
chr8 (10-109)||(31574667-31574767)
chr8 (21-67)||(17849004-17849051)
chr8 (160-258)||(4733101-4733200)
[»] chr6 (21 HSPs)
chr6 (9-298)||(17758654-17758943)
chr6 (20-109)||(16568326-16568415)
chr6 (160-280)||(5407700-5407821)
chr6 (160-280)||(5412025-5412146)
chr6 (20-109)||(16554038-16554127)
chr6 (20-109)||(16630594-16630683)
chr6 (20-109)||(16652300-16652389)
chr6 (208-298)||(30444869-30444959)
chr6 (20-109)||(34166246-34166335)
chr6 (20-80)||(5407076-5407136)
chr6 (20-80)||(5411401-5411461)
chr6 (24-109)||(11137498-11137584)
chr6 (160-252)||(16652410-16652503)
chr6 (160-251)||(5406961-5407052)
chr6 (160-251)||(5411286-5411377)
chr6 (166-252)||(16554154-16554241)
chr6 (166-252)||(16630710-16630797)
chr6 (210-275)||(28038631-28038696)
chr6 (167-252)||(34166363-34166449)
chr6 (52-153)||(22615094-22615195)
chr6 (21-109)||(30444711-30444800)
[»] chr5 (16 HSPs)
chr5 (20-109)||(535095-535184)
chr5 (20-94)||(13487385-13487459)
chr5 (160-280)||(13487495-13487615)
chr5 (160-252)||(535205-535298)
chr5 (10-109)||(13294990-13295090)
chr5 (160-250)||(42427038-42427129)
chr5 (183-256)||(16545936-16546009)
chr5 (20-109)||(26174140-26174229)
chr5 (20-109)||(29721733-29721822)
chr5 (20-109)||(40381478-40381567)
chr5 (21-109)||(16408661-16408749)
chr5 (166-252)||(26174256-26174343)
chr5 (180-281)||(16408791-16408892)
chr5 (20-109)||(16545802-16545891)
chr5 (167-267)||(40381595-40381696)
chr5 (184-252)||(29721870-29721938)
[»] chr4 (17 HSPs)
chr4 (20-108)||(12740452-12740540)
chr4 (20-108)||(12748658-12748746)
chr4 (20-87)||(34571338-34571405)
chr4 (20-109)||(54881944-54882033)
chr4 (20-109)||(7124070-7124159)
chr4 (160-252)||(12740337-12740430)
chr4 (160-252)||(12748543-12748636)
chr4 (160-252)||(54882054-54882146)
chr4 (21-109)||(5137455-5137543)
chr4 (162-248)||(34571210-34571296)
chr4 (183-267)||(7124204-7124288)
chr4 (21-109)||(8394781-8394869)
chr4 (102-153)||(35371626-35371677)
chr4 (167-252)||(5137571-5137657)
chr4 (160-298)||(10114095-10114233)
chr4 (160-252)||(8394890-8394983)
chr4 (186-275)||(36770731-36770820)
[»] chr2 (7 HSPs)
chr2 (10-109)||(28569190-28569290)
chr2 (9-109)||(14634718-14634817)
chr2 (209-281)||(28569045-28569117)
chr2 (160-250)||(14634606-14634697)
chr2 (65-142)||(28521650-28521727)
chr2 (65-113)||(7858546-7858594)
chr2 (186-264)||(42018494-42018572)
[»] scaffold1908 (2 HSPs)
scaffold1908 (20-109)||(723-812)
scaffold1908 (160-252)||(833-926)
[»] scaffold0219 (1 HSPs)
scaffold0219 (20-94)||(23088-23163)
[»] scaffold0491 (2 HSPs)
scaffold0491 (166-252)||(9521-9608)
scaffold0491 (20-105)||(9639-9724)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 6430750 - 6431039
Alignment:
Q  9 gaagaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6430750 gaagaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 6430849  T
Q  109 gtagtgtttctctagtgaaactaggaggagacaagttgaagacaccaaagcggtacaactatggaggccttggtgtttatgctttagtagcgagcatgtg 208  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6430850 ttagtgtttctctagcgaaactaggaggagacaagttgaagacaccaaagcggtacaactatggaggccttggtgtttatgctctagtagcgagcatgtg 6430949  T
Q  209 aattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
    |||||||||||||||| |||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6430950 aattcttcatgagcacggaagacatttcgagggttgaagaatgtttggcatgacttgtggaattaccgaaaaataccaatggtaattgga 6431039  T

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Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 4510088 - 4509800
Alignment:
Q  11 agaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtgt 110  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||     
T  4510088 agaatactcgtgatcaacctttgaggtggagttgcaaggtaaaggcagagtatgtgtacgcgtttggaagttgaggtgcagaaatctcaacttgaggtgg 4509989  T
Q  111 agtgtttctctagtgaaactaggaggagacaagttgaagacaccaaagcggtacaactatggaggcctt-ggtgtttatgctttagtagcgagcatgtga 209  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||| ||||| | |||| | ||||||||||    
T  4509988 agtgtttctctagtgagactaggaggagacaagttgaagacaccgaagcggtacgactattgaggccttaggtgcttatgttctagttgtgagcatgtga 4509889  T
Q  210 attcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
    |||||||||||  |||||||||||| | ||| | ||||||||| |||||| |||||||||||||||| |||| | ||||||||||||||    
T  4509888 attcttcatgaagacagaaggcatttcggggttggaagaatgtatggcattacttgtggaattaccggaaaagaccaatggtaattgga 4509800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 4511930 - 4511642
Alignment:
Q  11 agaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtgt 110  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||     
T  4511930 agaatactcgtgatcaacctttgaggtggagttgcaaggtaaaggcagagtatgtgtacgcgtttggaagttgaggtgcagaaatctcaacttgaggtgg 4511831  T
Q  111 agtgtttctctagtgaaactaggaggagacaagttgaagacaccaaagcggtacaactatggaggcctt-ggtgtttatgctttagtagcgagcatgtga 209  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||| ||||| | |||| | ||||||||||    
T  4511830 agtgtttctctagtgagactaggaggagacaagttgaagacaccgaagcggtacgactattgaggccttaggtgcttatgttctagttgtgagcatgtga 4511731  T
Q  210 attcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
    |||||||||||  |||||||||||| | ||| | ||||||||| |||||| |||||||||||||||| |||| | ||||||||||||||    
T  4511730 attcttcatgaagacagaaggcatttcggggttggaagaatgtatggcattacttgtggaattaccggaaaagaccaatggtaattgga 4511642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 48490758 - 48490854
Alignment:
Q  13 aatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||    
T  48490758 aatacttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcatttggaagttgaggtagagaaagctcaacttgaggtg 48490854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 47674945 - 47674856
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| ||| |||||    
T  47674945 gtgatcaacctttaaggtggagttgcaaggtgaaggcatagtgtgtgtacgcatttggaagttgaggtagagaaagctcaacttaaggtg 47674856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 6047899 - 6047999
Alignment:
Q  10 aagaatatttgtgatcaacctttgaggtggagttgcaaggtg-aaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||   ||||||||||||||| ||||||| ||||||||||||    
T  6047899 aagaatacttgtaatcaacctttgaggtggagttgcaaggtgaaagacatagtgtgcgtacttatttggaagttgaggtagagaaatgtcagcttgaggt 6047998  T
Q  109 g 109  Q
    |    
T  6047999 g 6047999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 6593339 - 6593250
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||  ||||||| ||||||||||||||| |||||| |||| |||||||||    
T  6593339 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggatgtacgcatttggaagttgaggtagagaaagctcaacttgaggtg 6593250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 48490875 - 48490968
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||||||||||||||| |||||||||| |||| | |||||||| ||||||||||||| || |||||||||||  || |||||||||||    
T  48490875 ggtacaactatggaggccttgggtgtttatgctctagttgtgagcatgtaaattcttcatgaggacggaaggcattccgaggtttgaagaatgt 48490968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 18390976 - 18390888
Alignment:
Q  21 tgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||| |||||| | | ||||||||  ||||||| ||||||||||||||| |||||| |||| |||||||||    
T  18390976 tgatcaacctttgaggtggagtggcaaggcggaagcatagtggatgtacgcatttggaagttgaggtagagaaagctcaacttgaggtg 18390888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 47674835 - 47674743
Alignment:
Q  160 ggtacaactatggaggccttg-gtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||||||||||| ||||||| ||| | ||||| |||| | |||||||||||||||||||||| || |||| |||||||||| |||||||||||    
T  47674835 ggtacaactatggtggccttgagtgat-atgctctagttgtgagcatgtgaattcttcatgaggacggaagacattccagggtttgaagaatgt 47674743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 26214189 - 26214237
Alignment:
Q  61 tgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||| ||||||||||||||| || ||| ||||||||||||||    
T  26214189 tgtgtgtacgcatttggaagttgaggtagataaagctcagcttgaggtg 26214237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 43403276 - 43402986
Alignment:
Q  9 gaagaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    |||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43403276 gaagaatactcgtgatcaacctttgaggtgaagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 43403177  T
Q  109 gtagtgtttctctagtgaaactaggaggagacaagttgaagacaccaaagcggtacaactatggaggcctt-ggtgtttatgctttagtagcgagcatgt 207  Q
    | |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||||||||||    
T  43403176 ggagtgtttctctagtgagactaggaggagacaagttgaagacaccgaagcggtacaactatggaggctttgggtgtttatgctctagtagcgagcatgt 43403077  T
Q  208 gaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  43403076 gaattcttcatgaggacggaaggcattccgggggttgaagaatgtttggcatggcttgtggaattaccggaaaataccaatggtaattgga 43402986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 29812230 - 29812319
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| ||| |||||    
T  29812230 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcatttggaagttgaggtagagaaagctcaacttaaggtg 29812319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 32892442 - 32892538
Alignment:
Q  13 aatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |||||||||  |||||| |||| |||||||||    
T  32892442 aatacttgtgatcaacctttgaggtggagttgcaaggtgaaagcatggtgtgtgtacgcatttgaaagttgaggcagagaaagctcaacttgaggtg 32892538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 9635196 - 9635103
Alignment:
Q  160 ggtacaactatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||| ||||||||||||||||| ||||||||| |||| | |||||||||||||||||||||| |  ||||||||||| ||| |||||||||||    
T  9635196 ggtacgactatggaggccttggttgtttatgctctagttgtgagcatgtgaattcttcatgaggatggaaggcattccggggtttgaagaatgt 9635103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 23198830 - 23198743
Alignment:
Q  166 actatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||||||||| |||| |||||||||| |||| | |||||||||||||||||||||| || ||||||||||| ||| |||||||||||    
T  23198830 actatggaggctttgggtgtttatgctctagttgtgagcatgtgaattcttcatgaggacggaaggcattccggggtttgaagaatgt 23198743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 5259020 - 5258927
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||| ||||||||||| |||| |||||||||| |||| | |||||||||||||||||||||| || ||||| ||||| ||| |||||||||||    
T  5259020 ggtacgactatggaggctttgggtgtttatgctctagttgtgagcatgtgaattcttcatgaggacggaaggtattccggggtttgaagaatgt 5258927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 7763630 - 7763718
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||| ||||||||| ||||||||||||||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  7763630 gtgatcaacctt-gaggtggagctgcaaggtgaaggcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 7763718  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 1619709 - 1619608
Alignment:
Q  10 aagaatatttgtgatcaacctttgaggtggagttgcaaggtgaagg-catagtgtg-tgtacgcgtttggaagttgaggtggagaaatctcagcttgagg 107  Q
    ||||||| ||||||||| ||||| |||||||||| ||||||||| | ||| ||| | ||||||| ||||||||||||||| ||||||  |||||||||||    
T  1619709 aagaatacttgtgatcagccttttaggtggagtttcaaggtgaaagacatggtgggatgtacgcatttggaagttgaggtagagaaagttcagcttgagg 1619610  T
Q  108 tg 109  Q
    ||    
T  1619609 tg 1619608  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 4599525 - 4599436
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  4599525 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 4599436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 6717871 - 6717960
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||| ||| | ||||||||   |||| | ||||||||||||||| ||||||  ||| |||||||||    
T  6717871 gtgatcaacctttgaggtggagttgcaaagtggaagcatagtggaagtactcatttggaagttgaggtagagaaagttcaacttgaggtg 6717960  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10057607 - 10057696
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  10057607 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 10057696  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10059829 - 10059918
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  10059829 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 10059918  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10062051 - 10062140
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  10062051 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 10062140  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10064273 - 10064362
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  10064273 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 10064362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10066495 - 10066584
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  10066495 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 10066584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10210560 - 10210649
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  10210560 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtacccatttggaagttgaggtagagaaagctcaacttgaggtg 10210649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 6717988 - 6718075
Alignment:
Q  166 actatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||||||||| ||||  ||||||||| |||| | |||||||||||||||||||||| || | ||| ||||||||| |||||||||||    
T  6717988 actatggaggctttgggagtttatgctctagttgtgagcatgtgaattcttcatgaggacgggaggtattccagggtttgaagaatgt 6718075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 7763739 - 7763832
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||| |||||||||||||||| |||||||||| |||  | |||||| ||||||||||||||| || |||| |||||  ||| |||||||||||    
T  7763739 ggtacgactatggaggccttgggtgtttatgctctaggtgtgagcatatgaattcttcatgaggacggaagacattctggggtttgaagaatgt 7763832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 23198945 - 23198857
Alignment:
Q  21 tgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||| | |||||| | ||||||||   |||| | ||||||||||||||| |||||| |||| ||| |||||    
T  23198945 tgatcaacctttgaggtggagtggtaaggtggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttaaggtg 23198857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 4599408 - 4599322
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||| ||||  ||||||||| |||| | |||||||||||||||||||||| || || || ||||| ||| |||||||||||    
T  4599408 ctatggaggctttgggagtttatgctctagtggtgagcatgtgaattcttcatgaggacggatggtattccggggtttgaagaatgt 4599322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 10210677 - 10210763
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||| ||||  ||||||||| |||| | ||||||||| |||||||||||| ||||| || ||||| ||| |||||||||||    
T  10210677 ctatggaggctttgggagtttatgctctagtggtgagcatgtggattcttcatgaggacagatggtattccggggtttgaagaatgt 10210763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 5259130 - 5259041
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||| ||||||||||||| ||||||| | ||||||||    ||| | ||||||||||||||| |||||| |||| ||| |||||    
T  5259130 gtgatcaacccttgaggtggagttacaaggtggaagcatagtggaaatactcatttggaagttgaggtagagaaagctcaacttaaggtg 5259041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 29812340 - 29812432
Alignment:
Q  160 ggtacaactatggaggccttg-gtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||||||| |||||| ||| | ||||| |||| | |||| ||||||||||||||||| || ||||||||||  ||| |||||||||||    
T  29812340 ggtacaactatggatgccttgagtgct-atgctctagttgtgagcttgtgaattcttcatgagaacggaaggcattctggggtttgaagaatgt 29812432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 15824530 - 15824435
Alignment:
Q  185 ttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaa 280  Q
    ||||||| |||| ||||||| |||||||||||| ||| || |||| |||||   || ||||||||||| | ||||||||||||  |||||| ||||    
T  15824530 ttatgctctagttgcgagcaagtgaattcttcaagaggacggaagtcattctgaggtttgaagaatgtatagcatgacttgtgtgattacctaaaa 15824435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 10057724 - 10057810
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||| ||||  ||||||||| |||| | ||||||||| |||||||||||| || || || ||||| ||| |||||||||||    
T  10057724 ctatggaggctttgggagtttatgctctagtggtgagcatgtggattcttcatgaggacggatggtattccggggtttgaagaatgt 10057810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 10059946 - 10060032
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||| ||||  ||||||||| |||| | ||||||||| |||||||||||| || || || ||||| ||| |||||||||||    
T  10059946 ctatggaggctttgggagtttatgctctagtggtgagcatgtggattcttcatgaggacggatggtattccggggtttgaagaatgt 10060032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 10062168 - 10062254
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||| ||||  ||||||||| |||| | ||||||||| |||||||||||| || || || ||||| ||| |||||||||||    
T  10062168 ctatggaggctttgggagtttatgctctagtggtgagcatgtggattcttcatgaggacggatggtattccggggtttgaagaatgt 10062254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 10064390 - 10064476
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||| ||||  ||||||||| |||| | ||||||||| |||||||||||| || || || ||||| ||| |||||||||||    
T  10064390 ctatggaggctttgggagtttatgctctagtggtgagcatgtggattcttcatgaggacggatggtattccggggtttgaagaatgt 10064476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 10066612 - 10066698
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||| ||||  ||||||||| |||| | ||||||||| |||||||||||| || || || ||||| ||| |||||||||||    
T  10066612 ctatggaggctttgggagtttatgctctagtggtgagcatgtggattcttcatgaggacggatggtattccggggtttgaagaatgt 10066698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 15824663 - 15824633
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggt 50  Q
    |||||||||||||||||||||||||||||||    
T  15824663 gtgatcaacctttgaggtggagttgcaaggt 15824633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 19753287 - 19753577
Alignment:
Q  9 gaagaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    |||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  19753287 gaagaatactcgtgatcaaccttttaggtggagttgcaaggtgaaggcatagtatgtgtacgcgtttggaagttgaggtggagaaatatcagcttgaggt 19753386  T
Q  109 gtagtgtttctctagtgaaactaggaggagacaagttgaagacaccaaagcggtacaactatggaggcctt-ggtgtttatgctttagtagcgagcatgt 207  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||| | ||||||||    
T  19753387 ggagtgtttctctagtgagactaggaggagacaagttgaagacaccaaagcggtacgactatggaggccttgggtgcttatgctctagttgtgagcatgt 19753486  T
Q  208 gaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
    |||||||||||||| || ||||||||| | ||| ||||||||||| |||| | |||||||||||||||| |||| | ||||||||||||||    
T  19753487 gaattcttcatgaggacggaaggcatttcggggtttgaagaatgtatggcgttacttgtggaattaccggaaaagaccaatggtaattgga 19753577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 28222231 - 28222142
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||    
T  28222231 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcatttggaagttgaggtagagaaagctcaacttgaggtg 28222142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 28221860 - 28221771
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||| |||||||||    
T  28221860 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtatgcatttggaagttgaggtagagaaagctcaacttgaggtg 28221771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 50168158 - 50168069
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||| |||||||||    
T  50168158 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacacatttggaagttgaggtagagaaaactcaacttgaggtg 50168069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 776433 - 776522
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||| |||| |||||||||    
T  776433 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtatacgcatttggaagttgaggtagataaagctcaacttgaggtg 776522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 13548490 - 13548401
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||| ||| |||||    
T  13548490 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcatttggaagttaaggtagagaaagctcaacttaaggtg 13548401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 28242945 - 28243034
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||| |||||| |||| || ||||||    
T  28242945 gtgatcaacctttgaggtggagtggcaaggtgaaagcatagtgtgtgtacacatttggaagttgaggtagagaaagctcaactagaggtg 28243034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 31929092 - 31929008
Alignment:
Q  9 gaagaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaa 94  Q
    |||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||| ||||||    
T  31929092 gaagaatactcgtgatcaacctttgaggtggagttgcaaggtgaatgcatagtgtgtgtacg-atttggaagttgaggtagagaaa 31929008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 31658508 - 31658590
Alignment:
Q  27 acctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||||||| ||||||||| || |||||| |||||||| |||||| |||| |||||||||    
T  31658508 acctttgaggtggagttgcaaggtgaaggcatggtgtgtgtaagcatttggacgttgaggtagagaaagctcaacttgaggtg 31658590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 31928972 - 31928834
Alignment:
Q  160 ggtacaactatggaggccttggtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcat 259  Q
    ||||| ||||||||| ||||||    |||||| |||| | ||||| | |||||||||| ||| ||  ||| |||| | ||||||||||||||||||||||    
T  31928972 ggtacgactatggagaccttgggtgatatgctctagttgtgagcaagagaattcttcaagaggacgaaagacatttcgggggttgaagaatgtttggcat 31928873  T
Q  260 gacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
      ||||||||||||||| ||||| |||||||||||||||    
T  31928872 tgcttgtggaattaccggaaaatgtcaatggtaattgga 31928834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 776543 - 776632
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaaga 248  Q
    ||||| |||||||||||||||| |||||||||| |||| | |||||||||||||||||||||| || ||||||||||| ||| |||||||    
T  776543 ggtaccactatggaggccttgggtgtttatgctctagttgtgagcatgtgaattcttcatgaggacggaaggcattccggggtttgaaga 776632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 28221750 - 28221657
Alignment:
Q  160 ggtacaactatggaggcctt-ggtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||| ||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||| |||||||||||| | ||| ||||| |||||    
T  28221750 ggtataactatggaggcctttggtgtttatgctctagttgtgagcatgtgaattcttcatgaggacagaaggcattacggggtttgaataatgt 28221657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 28222121 - 28222028
Alignment:
Q  160 ggtacaactatggaggcctt-ggtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||| ||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||| ||||||| |||||| ||| ||||| |||||    
T  28222121 ggtataactatggaggccttaggtgtttatgctctagttgtgagcatgtgaattcttcatgaggacagaagccattccggggtttgaataatgt 28222028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 50168048 - 50167955
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||| |||||||||||||||| |||||||||| |||| | |||||||||||||||||||||| ||  |||||||||| ||| ||||| |||||    
T  50168048 ggtacgactatggaggccttgggtgtttatgctctagttgtgagcatgtgaattcttcatgaggacgaaaggcattccggggtttgaaaaatgt 50167955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 13126604 - 13126503
Alignment:
Q  10 aagaatatttgtgatcaacctttgaggtggagttgcaaggtg-aaggcatagtgtg-tgtacgcgtttggaagttgaggtggagaaatctcagcttgagg 107  Q
    ||||||| |||| ||| |||||| |||||||||| ||||||| ||| ||||||| | ||||||| ||||||||||||||| |||||| ||||||| ||||    
T  13126604 aagaatacttgtaatctacctttaaggtggagtttcaaggtggaagacatagtgggatgtacgcatttggaagttgaggtagagaaagctcagctagagg 13126505  T
Q  108 tg 109  Q
    ||    
T  13126504 tg 13126503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 13548380 - 13548288
Alignment:
Q  160 ggtacaactatggaggccttg-gtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||||||||||||||||||| ||| | ||| | |||| | |||||||||||||||||||||| || ||||||||||| ||| |||||||||||    
T  13548380 ggtacaactatggaggccttgagtgct-atgttctagttgtgagcatgtgaattcttcatgaggacggaaggcattccggggtttgaagaatgt 13548288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 28243095 - 28243188
Alignment:
Q  200 gagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatatcaatggtaa 293  Q
    ||||||||||||||| |||||| || ||| |||||||  || ||||||||||||| ||||| ||||||| ||||||| |||| | |||||||||    
T  28243095 gagcatgtgaattctccatgaggacggaaagcattccgtggtttgaagaatgtttagcatggcttgtgggattaccggaaaagaccaatggtaa 28243188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 252
Target Start/End: Original strand, 41139122 - 41139318
Alignment:
Q  56 catagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtgtagtgtttctctagtgaaactaggaggagacaagttgaagacacca 155  Q
    ||||||| |||||  |||||||||| |||| |||||||||||||| |||||| | ||| || | ||| | | |||||||| ||||||||| ||||||| |    
T  41139122 catagtgggtgtatccgtttggaagatgagatggagaaatctcagattgaggggaagtcttccactactcagactaggagtagacaagttaaagacacta 41139221  T
Q  156 aagcggtacaactatggaggccttg-gtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
     |  ||||||||||||||| ||||| ||| ||||||| ||   | ||||| | |||||||||| ||| ||  ||||||||| ||||  ||||||||||    
T  41139222 gaatggtacaactatggagaccttgcgtg-ttatgctctaactgtgagcaagagaattcttcaagaggacgaaaggcattctagggtatgaagaatgt 41139318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 40220871 - 40220597
Alignment:
Q  24 tcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtgtagtgtttctctag 123  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  40220871 tcaacctttgaggtggagttgcaaggtgaaggcataacgtgtgtacgcgtttggaagttgaggtggagaaatctcagtttgaggtggagtgtttctctag 40220772  T
Q  124 tgaaactaggaggagacaagttgaagacaccaaagcggtacaactatggaggccttggtgtttatgctttagtagcgagcatgtgaattcttcatgagca 223  Q
    ||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||| |||| | |||||||||||||||||| ||| |    
T  40220771 tgagattaggaggagacaagttgaagacaccgaagcggtacaactatggaggccttgggtgttatgctctagttgtgagcatgtgaattcttcaagagta 40220672  T
Q  224 cagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
    |  |||||||| | ||||||||||||||  || |||| ||||||||||||||| ||||   ||||||||||||||    
T  40220671 cgaaaggcatttcgggggttgaagaatgaatgacatggcttgtggaattaccggaaaaggccaatggtaattgga 40220597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 4732991 - 4733080
Alignment:
Q  21 tgatcaacctttgaggtggagttgcaaggt-gaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||    
T  4732991 tgatcaacctttgaggtggagttgcaagggagaaagcatagtgtgtgtacgcatttggaaattgaggtagagaaatctcaacttgaggtg 4733080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 42436433 - 42436348
Alignment:
Q  9 gaagaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaa 94  Q
    |||||||| | |||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||| ||||||    
T  42436433 gaagaatactcgtgatcaatctttgaggtggagttgcaaggtgaaggcatactgtatgtacgcatttgaaagttgaggtagagaaa 42436348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 34255203 - 34255110
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||| |||||||||||||||| |||||||||| |||| | |||||||||||||||||||||| || ||||| ||||| ||| |||||||||||    
T  34255203 ggtacgactatggaggccttgggtgtttatgctctagttgtgagcatgtgaattcttcatgaggacggaaggtattccggggtttgaagaatgt 34255110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 42436300 - 42436187
Alignment:
Q  185 ttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatat 284  Q
    ||||||| |||| | |||||||||||||||||||||| ||  ||||||||   ||| ||||||||||| || |||||||||||||||||||| ||||       
T  42436300 ttatgctctagttgtgagcatgtgaattcttcatgaggacgaaaggcattgtggggtttgaagaatgtatgacatgacttgtggaattaccggaaaaggc 42436201  T
Q  285 caatggtaattgga 298  Q
    ||||||||||||||    
T  42436200 caatggtaattgga 42436187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 34255313 - 34255224
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||| ||||||| | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  34255313 gtgatcaacctttgaggtggagttacaaggtggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 34255224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 41365831 - 41365754
Alignment:
Q  9 gaagaatatttgtgatcaacctttgaggtggagttgcaagg-tgaaggcatagtgtgtgtacgcgtttggaagttgag 85  Q
    |||||||| | ||||||||||||||||||||||||||||||   ||||||||||||||||| || |||||||||||||    
T  41365831 gaagaatactcgtgatcaacctttgaggtggagttgcaaggcaaaaggcatagtgtgtgtatgcatttggaagttgag 41365754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 31574767 - 31574667
Alignment:
Q  10 aagaatatttgtgatcaacctttgaggtggagttgcaaggtg-aaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    ||||||| | ||||||| |||||||||||||||| ||||||| ||| ||| |||  ||||||| ||||  ||||||||| |||||| |||| ||||||||    
T  31574767 aagaatactcgtgatcagcctttgaggtggagtttcaaggtgaaagtcattgtggatgtacgcatttgctagttgaggtagagaaagctcaacttgaggt 31574668  T
Q  109 g 109  Q
    |    
T  31574667 g 31574667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 17849004 - 17849051
Alignment:
Q  21 tgatcaacctttgaggtggagttgcaaggtg-aaggcatagtgtgtgt 67  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  17849004 tgatcaacctttgaggtggagttgcaaggtgaaagacatagtgtgtgt 17849051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 4733101 - 4733200
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggca 258  Q
    ||||| |||||||||| ||||| |||||||||| |||| | | |||||||||| ||||||||| |   ||| |||||| ||| ||||||||||| |||||    
T  4733101 ggtacgactatggaggtcttgggtgtttatgctctagttgtgtgcatgtgaatgcttcatgaggatgaaagtcattcccgggtttgaagaatgtatggca 4733200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 17758654 - 17758943
Alignment:
Q  9 gaagaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    |||||||| | |||||||||||| ||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||| ||||||||||    
T  17758654 gaagaatactcgtgatcaaccttagaggtggagttgcaaggtgtagacatagtgtgtgtacgcgtttagatgttgaggtggagaaatcttagcttgaggt 17758753  T
Q  109 gtagtgtttctctagtgaaactaggaggagacaagttgaagacaccaaagcggtacaactatggaggccttggtgtttatgctttagtagcgagcatgtg 208  Q
    | |||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||   ||||||  |||| | ||| |||||    
T  17758754 ggagtgtttctctattgagactaggaggagacaagttgaagacaccaaagcggtaaaacaatggaggccttgggtgttatgcactagttgtgagtatgtg 17758853  T
Q  209 aattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
    ||||||||| ||| |   ||||||||||  |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||    
T  17758854 aattcttcaagagtatgaaaggcattcctagggttgaagaatgtttggcatggcttatggaattaccggaaaataccaatggtaattgga 17758943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 16568326 - 16568415
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||||||   ||||||||||||||| ||||||||||| |||||||||    
T  16568326 gtgatcaacctttgaggtggagttacaaggtggaagcatagtgtgtgtactaatttggaagttgaggtagagaaatctcaacttgaggtg 16568415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 5407821 - 5407700
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggca 258  Q
    |||||||||||||||||||||| | |||||||| |||| | |||||||| || |||||||||| || |||||||||||| || ||||||||||| |||      
T  5407821 ggtacaactatggaggccttgggtatttatgctctagttgtgagcatgtaaactcttcatgaggacggaaggcattccaaggtttgaagaatgtatggtg 5407722  T
Q  259 tgacttgtggaattaccgaaaa 280  Q
    |||||||||  |||||| ||||    
T  5407721 tgacttgtgtgattacctaaaa 5407700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 5412146 - 5412025
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggca 258  Q
    |||||||||||||||||||||| | |||||||| |||| | |||||||| || |||||||||| || |||||||||||| || ||||||||||| |||      
T  5412146 ggtacaactatggaggccttgggtatttatgctctagttgtgagcatgtaaactcttcatgaggacggaaggcattccaaggtttgaagaatgtatggtg 5412047  T
Q  259 tgacttgtggaattaccgaaaa 280  Q
    |||||||||  |||||| ||||    
T  5412046 tgacttgtgtgattacctaaaa 5412025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 16554038 - 16554127
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||| ||| | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  16554038 gtgatcaacctttgaggtggagttgcaaagtggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 16554127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 16630594 - 16630683
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||| ||| | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  16630594 gtgatcaacctttgaggtggagttgcaaagtggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 16630683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 16652300 - 16652389
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||||||||| ||| | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  16652300 gtgatcaacctttgaggtggagttgcaaagtggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 16652389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 30444869 - 30444959
Alignment:
Q  208 gaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
    |||||||||| ||| |||||||||||||  ||| ||||||||||| ||||||||||||||| |||||| ||||| | |||  |||||||||    
T  30444869 gaattcttcaagaggacagaaggcattcaggggtttgaagaatgtatggcatgacttgtgggattaccaaaaaagaacaagagtaattgga 30444959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 34166246 - 34166335
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  34166246 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 34166335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 5407136 - 5407076
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaag 80  Q
    |||||||||||||||||||||||| ||||||| | ||||||||||||||| | ||||||||    
T  5407136 gtgatcaacctttgaggtggagttacaaggtggaagcatagtgtgtgtactcatttggaag 5407076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 5411461 - 5411401
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaag 80  Q
    |||||||||||||||||||||||| ||||||| | ||||||||||||||| | ||||||||    
T  5411461 gtgatcaacctttgaggtggagttacaaggtggaagcatagtgtgtgtactcatttggaag 5411401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 11137498 - 11137584
Alignment:
Q  24 tcaacctttgaggtggagttgcaaggtg-aaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||| ||||||| ||| |||||||  ||||||||||||  |||| |||| |||||| ||||||||| ||||    
T  11137498 tcaacctttgaggtggagtttcaaggtgaaagtcatagtggatgtacgcgtttgctagttcaggtagagaaaactcagcttgtggtg 11137584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 16652410 - 16652503
Alignment:
Q  160 ggtacaactatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||| ||||||||||| ||||  ||||||| | |||| | |||||||||||||||||||||| || ||||| ||||| ||| |||||||||||    
T  16652410 ggtacgactatggaggctttgggagtttatgttctagtggtgagcatgtgaattcttcatgaggacggaaggtattccggggtttgaagaatgt 16652503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 5407052 - 5406961
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatg 251  Q
    ||||| |||||||||||||||| | ||||||||  ||| | |||||||| || |||||||||| |||||||||||||| ||| ||||||||||    
T  5407052 ggtacgactatggaggccttgggtatttatgctccagttgtgagcatgttaactcttcatgag-acagaaggcattccggggtttgaagaatg 5406961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 5411377 - 5411286
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatg 251  Q
    ||||| |||||||||||||||| | ||||||||  ||| | |||||||| || |||||||||| |||||||||||||| ||| ||||||||||    
T  5411377 ggtacgactatggaggccttgggtatttatgctccagttgtgagcatgttaactcttcatgag-acagaaggcattccggggtttgaagaatg 5411286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 16554154 - 16554241
Alignment:
Q  166 actatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||||||||| ||||  ||||||| | |||| | |||||||||||||||||||||| || ||||| ||||| ||| |||||||||||    
T  16554154 actatggaggctttgggagtttatgttctagtggtgagcatgtgaattcttcatgaggacggaaggtattccggggtttgaagaatgt 16554241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 16630710 - 16630797
Alignment:
Q  166 actatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||||||||| ||||  ||||||| | |||| | |||||||||||||||||||||| || ||||| ||||| ||| |||||||||||    
T  16630710 actatggaggctttgggagtttatgttctagtggtgagcatgtgaattcttcatgaggacggaaggtattccggggtttgaagaatgt 16630797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 28038696 - 28038631
Alignment:
Q  210 attcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattacc 275  Q
    |||||||||||  || ||||||||||| | ||||||||||||| | ||||||||||||| ||||||    
T  28038696 attcttcatgaagacggaaggcattccggaggttgaagaatgtatagcatgacttgtgggattacc 28038631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 34166363 - 34166449
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||| ||||  ||||||||| |||| | ||||||||| |||||||||||| || || || ||||| ||| |||||||||||    
T  34166363 ctatggaggctttgggagtttatgctctagtggtgagcatgtggattcttcatgaggacggatggtattccggggtttgaagaatgt 34166449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 22615094 - 22615195
Alignment:
Q  52 aaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtgtagtgtttctctagtgaaactaggaggagacaagttgaagac 151  Q
    |||||||||||  ||||||| |||||||| |||||| | |||| |||| ||||||||| ||| ||   |||||   ||||||| |||||||||||| |||    
T  22615094 aaggcatagtggatgtacgcatttggaaggtgaggtagtgaaagctcaacttgaggtggagtcttctactagtaggactaggaagagacaagttgatgac 22615193  T
Q  152 ac 153  Q
    ||    
T  22615194 ac 22615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 30444711 - 30444800
Alignment:
Q  21 tgatcaacctttgaggtggagttgcaaggtgaagg-catagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||| ||||||||||||||| ||||||||| | |||||||  | |||   ||||||| ||||||| ||||||  |||||||||||||    
T  30444711 tgatcaatctttgaggtggagtttcaaggtgaaagtcatagtggatatacatatttggaacttgaggtagagaaaggtcagcttgaggtg 30444800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 535095 - 535184
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||| ||| |||||    
T  535095 gtgatcaacctttgaggtggaggtgcaaggtgaaggcatagtatgtgtacgcatttggaagttgaggtagagaaagctcaacttaaggtg 535184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 13487385 - 13487459
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaa 94  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||| ||||||    
T  13487385 gtgatcaacctttgaggtggagtagcaaggtgaagacatagtgtgtgtacgcattcggaagttgaggtagagaaa 13487459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 13487495 - 13487615
Alignment:
Q  160 ggtacaactatggaggccttggtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcat 259  Q
    |||| |||||||||||||||||   ||||||| |||| | |||||||||||||||||||||| || ||||||||||| ||| ||||||||||| |||  |    
T  13487495 ggtataactatggaggccttgggtgttatgctctagttgtgagcatgtgaattcttcatgaggacggaaggcattccggggtttgaagaatgtatggtgt 13487594  T
Q  260 gacttgtggaattaccgaaaa 280  Q
    ||||||||  |||||| ||||    
T  13487595 gacttgtgtgattacctaaaa 13487615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 535205 - 535298
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||||||||||||||| |||||||||| ||||   |||||||||||||||||||| | || ||||||||||| ||| |||||||||||    
T  535205 ggtacaactatggaggccttgggtgtttatgctctagttatgagcatgtgaattcttcatggggacggaaggcattccggggtttgaagaatgt 535298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 13294990 - 13295090
Alignment:
Q  10 aagaatatttgtgatcaacctttgaggtggagttgcaaggtgaagg-catagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    ||||||| | ||||||| |||| ||||||||||||||||||||| | |||||||   |||| | ||||||||||||||| |||||| |||||||||||||    
T  13294990 aagaatactcgtgatcagccttagaggtggagttgcaaggtgaaagacatagtggaagtactcatttggaagttgaggtagagaaagctcagcttgaggt 13295089  T
Q  109 g 109  Q
    |    
T  13295090 g 13295090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 42427129 - 42427038
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaat 250  Q
    |||||||||||||||||||||| |||||||||| |||  | |||||||||||||||||||||  || ||||||||||  ||| |||||||||    
T  42427129 ggtacaactatggaggccttgggtgtttatgctctagctgtgagcatgtgaattcttcatgatgacggaaggcattctggggtttgaagaat 42427038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 16545936 - 16546009
Alignment:
Q  183 gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttgg 256  Q
    ||||||||| |||| | |||||||||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  16545936 gtttatgctctagtggtgagcatgtgaattcttcatgaggacggaaggtattccggggtttgaagaatgtttgg 16546009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 26174140 - 26174229
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||||| | ||||||||   |||| | ||||||||||||||| |||||| |||| ||| |||||    
T  26174140 gtgatcaacctttgaggtggagtggcaaggtggaagcatagtgcaagtactcatttggaagttgaggtagagaaagctcaacttaaggtg 26174229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 29721733 - 29721822
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||| ||| | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  29721733 gtgatcaacctttgaggtggagtggcaaagtggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 29721822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 40381478 - 40381567
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||||| ||||||||||||||  |||||| |||| |||||||||    
T  40381478 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtacgcatttggaagttgaggcagagaaagctcaacttgaggtg 40381567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 16408661 - 16408749
Alignment:
Q  21 tgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||| |||||||| | ||||||||   |||| | ||||||||||||||| |||||| |||| ||| |||||    
T  16408661 tgatcaacctttgaggtggagtggcaaggtggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttaaggtg 16408749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 26174256 - 26174343
Alignment:
Q  166 actatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||||||||| ||||  ||||||||| |||| | |||||||||||||||||||||| || ||||| ||||| ||| |||||||||||    
T  26174256 actatggaggctttgggagtttatgctctagttgtgagcatgtgaattcttcatgaggacggaaggtattccggggtttgaagaatgt 26174343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 16408791 - 16408892
Alignment:
Q  180 ggtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaa 279  Q
    |||||||||||| |||| | |||||||||||||||||||||| || ||||| | ||| ||| ||||||||||| |||  || ||||||  |||||| |||    
T  16408791 ggtgtttatgctctagttgtgagcatgtgaattcttcatgaggacggaaggtactccggggtttgaagaatgtatggtgtggcttgtgtgattacctaaa 16408890  T
Q  280 aa 281  Q
    ||    
T  16408891 aa 16408892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 16545802 - 16545891
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| | |||| |||| |||||||||    
T  16545802 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagcgaaagctcaacttgaggtg 16545891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 40381595 - 40381696
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttg 265  Q
    |||||||||| ||||  ||||||||| |||| | ||||||||| |||||||||||| || ||||| ||||| ||| ||||||||||| |||  |||||||    
T  40381595 ctatggaggctttgggagtttatgctctagtggtgagcatgtggattcttcatgaggacggaaggtattccggggtttgaagaatgtatggggtgacttg 40381694  T
Q  266 tg 267  Q
    ||    
T  40381695 tg 40381696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 29721870 - 29721938
Alignment:
Q  184 tttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||| |||| | ||||||| |||||||||||||| || ||||| ||||| ||| |||||||||||    
T  29721870 tttatgctctagttgtgagcatgcgaattcttcatgaggacggaaggtattccggggtttgaagaatgt 29721938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 12740540 - 12740452
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||| |||||| |||| ||||||||    
T  12740540 gtgatcaacctttgaggtggagttgcaaggtggaagcatagtgtgtgtactcatttggaagttgaggtagagaaagctcaacttgaggt 12740452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 12748746 - 12748658
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||| |||||| |||| ||||||||    
T  12748746 gtgatcaacctttgaggtggagttgcaaggtggaagcatagtgtgtgtactcatttggaagttgaggtagagaaagctcaacttgaggt 12748658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 34571405 - 34571338
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggt 87  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||    
T  34571405 gtgatcaacctttgaggtggagttgcaaggtgaagacatagtgtatgtacgcatttggaagttgaggt 34571338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 54881944 - 54882033
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||| |||||||||  ||||||||| ||||||||||||||| | ||||||||||||||| |||||| |||| |||||||||    
T  54881944 gtgatcaacctttaaggtggagtgacaaggtgaaagcatagtgtgtgtacacatttggaagttgaggtagagaaagctcaacttgaggtg 54882033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 7124070 - 7124159
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||||||||||||||||| |||||| | | ||||||||  ||||||| ||||||||||||||| |||||| |||| |||||||||    
T  7124070 gtgatcaacctttgaggtggagtggcaaggcggaagcatagtggatgtacgcatttggaagttgaggtagagaaagctcaacttgaggtg 7124159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 12740430 - 12740337
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||||||||||||||| |||||||||| |||| |  |||| |||||||||||||||| || |||| |||||| ||| |||||||||||    
T  12740430 ggtacaactatggaggccttgggtgtttatgctctagttgtaagcacgtgaattcttcatgaggacggaagacattccggggtttgaagaatgt 12740337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 12748636 - 12748543
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||||||||||||||| |||||||||| |||| |  |||| |||||||||||||||| || |||| |||||| ||| |||||||||||    
T  12748636 ggtacaactatggaggccttgggtgtttatgctctagttgtaagcacgtgaattcttcatgaggacggaagacattccggggtttgaagaatgt 12748543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 54882054 - 54882146
Alignment:
Q  160 ggtacaactatggaggccttggtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||| ||||||||||||||||   ||||||| |||| | |||||||||||||||||| ||| || | ||||||||| |||||||||||||||    
T  54882054 ggtacgactatggaggccttgggtgttatgctctagttgtgagcatgtgaattcttcaagagtacgggaggcattcccggggttgaagaatgt 54882146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 5137455 - 5137543
Alignment:
Q  21 tgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| |||||| |||| |||||||||    
T  5137455 tgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagagaaagctcaacttgaggtg 5137543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 34571296 - 34571210
Alignment:
Q  162 tacaactatggaggccttggtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaaga 248  Q
    |||||||||| |||||||||    |||||| |||| | |||||||||||||||||||||| || ||||||||||| ||| |||||||    
T  34571296 tacaactatgaaggccttgggtgctatgctctagttgtgagcatgtgaattcttcatgaggacggaaggcattccggggtttgaaga 34571210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 7124204 - 7124288
Alignment:
Q  183 gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtg 267  Q
    ||||||||| |||| | ||||||||| |||||||||||| || ||||| ||||| ||| ||||||||||| |||  |||||||||    
T  7124204 gtttatgctctagtggtgagcatgtggattcttcatgaggacggaaggtattccggggtttgaagaatgtatggggtgacttgtg 7124288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 8394781 - 8394869
Alignment:
Q  21 tgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    |||||||||||||||||||||| |||||| | | ||||||||   |||| | ||||||||||||||| | |||| |||| |||||||||    
T  8394781 tgatcaacctttgaggtggagtggcaaggcggaagcatagtggaagtactcatttggaagttgaggtagcgaaagctcaacttgaggtg 8394869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 35371677 - 35371626
Alignment:
Q  102 ttgaggtgtagtgtttctctagtgaaactaggaggagacaagttgaagacac 153  Q
    |||||||| ||| || | ||||||| ||||||||||||||||||||||||||    
T  35371677 ttgaggtggagtcttccactagtgagactaggaggagacaagttgaagacac 35371626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 5137571 - 5137657
Alignment:
Q  167 ctatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||| ||||  ||||||||| |||| | ||||||||| |||||||||||| || || || ||||| ||| |||||||||||    
T  5137571 ctatggaggctttgggagtttatgctctagtggtgagcatgtggattcttcatgaggacggatggtattccggggtttgaagaatgt 5137657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 10114095 - 10114233
Alignment:
Q  160 ggtacaactatggaggccttggtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcat 259  Q
    ||||| ||||||||| ||||||   |||| ||||||| | |||||   |||||||||||||  ||| ||| |||||| | | ||||||||||| ||||||    
T  10114095 ggtacgactatggagaccttgggtgttattctttagttgtgagcaatggaattcttcatgaagacataagacattccggagtttgaagaatgtatggcat 10114194  T
Q  260 gacttgtggaattaccgaaaaatatcaatggtaattgga 298  Q
    | ||||||| ||| ||  |||||| ||| ||| ||||||    
T  10114195 ggcttgtgggattgccctaaaataccaagggtgattgga 10114233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 8394890 - 8394983
Alignment:
Q  160 ggtacaactatggaggccttggt-gtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||| ||||||||||| ||||  || |||||| |||| | |||||| ||||||||||||||| || || || ||||| ||| |||||||||||    
T  8394890 ggtacgactatggaggctttgggagtgtatgctctagttgtgagcatatgaattcttcatgaggacggatggtattccggggtttgaagaatgt 8394983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 36770731 - 36770820
Alignment:
Q  186 tatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattacc 275  Q
    |||||| |||| | ||||| | |||||||||||||  || ||||||||||| | ||||||||||||| |  |||| ||||||| ||||||    
T  36770731 tatgctctagttgtgagcaagggaattcttcatgaagacggaaggcattccggaggttgaagaatgtataacatggcttgtgggattacc 36770820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 28569290 - 28569190
Alignment:
Q  10 aagaatatttgtgatcaacctttgaggtggagttgcaaggtgaaggc-atagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggt 108  Q
    ||||||| | ||||||||||||||||||||| |||||||||||| || |||||| |||||||| ||||||||||||||| |||||| |||||||| ||||    
T  28569290 aagaatactcgtgatcaacctttgaggtggatttgcaaggtgaaagccatagtgggtgtacgcatttggaagttgaggtagagaaagctcagcttaaggt 28569191  T
Q  109 g 109  Q
    |    
T  28569190 g 28569190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 14634817 - 14634718
Alignment:
Q  9 gaagaatatttgtgatcaacctttgaggtggagttgcaaggtgaag-gcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgagg 107  Q
    |||||||| | ||||||||||||| |||||||||| |||||| ||  |||||||||||  ||||  |||||||||| ||| ||||||||||| |||||||    
T  14634817 gaagaatactcgtgatcaacctttaaggtggagttacaaggttaaaagcatagtgtgt--acgcaattggaagttggggtagagaaatctcaacttgagg 14634720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 28569117 - 28569045
Alignment:
Q  209 aattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgacttgtggaattaccgaaaaa 281  Q
    ||||||||| ||| |  ||||||||||| ||| ||||||||||| ||||||||||||||| |||| |||||||    
T  28569117 aattcttcaagaggatggaaggcattccggggtttgaagaatgtatggcatgacttgtgggattatcgaaaaa 28569045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 14634697 - 14634606
Alignment:
Q  160 ggtacaactatggagg-ccttggtgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaat 250  Q
    ||||| |||||||||| ||||||   ||||||| |||| | ||||||| |||||||||| ||| || ||||||||||||||| |||||||||    
T  14634697 ggtacgactatggagggccttgggtgttatgctctagttgtgagcatgagaattcttcaagaggacggaaggcattccagggtttgaagaat 14634606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 28521727 - 28521650
Alignment:
Q  65 tgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtgtagtgtttctctagtgaaactaggaggagacaa 142  Q
    ||||||||||| ||||||||||||| |||| ||| |||||||||| ||| ||   ||||||  |||||||||||||||    
T  28521727 tgtacgcgtttagaagttgaggtggtgaaaactcggcttgaggtggagtattctactagtgggactaggaggagacaa 28521650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 7858594 - 7858546
Alignment:
Q  65 tgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtgtagt 113  Q
    ||||||| ||||||||||||| |||||||| || |||||||||||||||    
T  7858594 tgtacgcatttggaagttgagatggagaaaacttagcttgaggtgtagt 7858546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 42018572 - 42018494
Alignment:
Q  186 tatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgtttggcatgactt 264  Q
    |||||| |||| | ||||| | |||||||||| ||| |  |||||||||||||| |||||||||||| || ||||||||    
T  42018572 tatgctctagttgtgagcaggggaattcttcaagaggatggaaggcattccaggagttgaagaatgtatgacatgactt 42018494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1908 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold1908
Description:

Target: scaffold1908; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 723 - 812
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttgaggtg 109  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||| |||||| |||| ||| |||||    
T  723 gtgatcaacatttgaggtggagtggcaaggtgaaagcatagtgtgtgtacgcatatggaagttgaggtagagaaagctcaacttaaggtg 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1908; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 833 - 926
Alignment:
Q  160 ggtacaactatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    |||||||||||||||| ||||| |||||||||| ||||   |||||||||||||||||||||| || ||||||  ||| ||| |||||||||||    
T  833 ggtacaactatggaggtcttgggtgtttatgctctagttttgagcatgtgaattcttcatgaggacggaaggcgctccggggtttgaagaatgt 926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 23163 - 23088
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtg-aaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaa 94  Q
    ||||||||||||| |||||||||||||||||| ||| |||| ||  ||||||| ||||||||||||||||||||||    
T  23163 gtgatcaacctttaaggtggagttgcaaggtgaaagacataatggatgtacgcatttggaagttgaggtggagaaa 23088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 9608 - 9521
Alignment:
Q  166 actatggaggccttgg-tgtttatgctttagtagcgagcatgtgaattcttcatgagcacagaaggcattccaggggttgaagaatgt 252  Q
    ||||||||||| |||| |||||||||| |||| | |||||||||||||||||||||| || ||||| ||| | ||| |||||||||||    
T  9608 actatggaggctttgggtgtttatgctctagttgtgagcatgtgaattcttcatgaggacggaaggtatttcggggtttgaagaatgt 9521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 9724 - 9639
Alignment:
Q  20 gtgatcaacctttgaggtggagttgcaaggtgaaggcatagtgtgtgtacgcgtttggaagttgaggtggagaaatctcagcttga 105  Q
    ||||||||||||||||||||||| |||||||| | ||||||||   |||| | |||| |||||||||| |||||| |||| |||||    
T  9724 gtgatcaacctttgaggtggagtggcaaggtggaagcatagtggaagtactcatttgaaagttgaggtagagaaagctcaacttga 9639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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