View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_high_27 (Length: 247)
Name: NF5951_high_27
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 41086706 - 41086937
Alignment:
| Q |
1 |
atgtgcatatggttaataattatgtgagtttcaatgagagtttgtgatgttgatgtgaatttttcatgttatagtatgctatttcataggcgggtggagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086706 |
atgtgcatatggttaataattatgtgagtttcaatgagagtttgtgatgttgatgtgaatttttcatgttatagtatgctatttcataggcgggtggagc |
41086805 |
T |
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| Q |
101 |
gtgtctctttcactcacgtgtcatttcttcattggttaggttatgcttctcaaaggtgatttaagtttataagtcaaacacttgcttgccctatattgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086806 |
gtgtctctttcactcacgtgtcatttcttcattggttaggttatgcttctcgaaggtgatttaagtttataagtcaaacacttgcttgccctatattgtt |
41086905 |
T |
|
| Q |
201 |
attgcttttatgactccctaaagaagctatgt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41086906 |
attgcttttatgactccctaaagaagctatgt |
41086937 |
T |
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