View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_high_28 (Length: 245)
Name: NF5951_high_28
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 42899307 - 42899433
Alignment:
| Q |
1 |
ttgttcacactttagctagaaaaccagagatccatccatccacgaaaacaaaatagaaacactgatcacaactgggcggaaaacgcagacggacttgctc |
100 |
Q |
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| T |
42899307 |
ttgttcacactttagctagaaaaccagagatccatccatccacgaaaacaacatagaaacactgatcacaactgggcggaaaacgcagacggacttgctc |
42899406 |
T |
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| Q |
101 |
atcgggcgcggttaacagtgagttcaa |
127 |
Q |
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| T |
42899407 |
atcgggcgcggttaacagtgagttcaa |
42899433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 42899474 - 42899551
Alignment:
| Q |
168 |
tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatctcac |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42899474 |
tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatttcac |
42899551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 19386543 - 19386499
Alignment:
| Q |
60 |
cactgatcacaactgggcggaaaacgcagacggacttgctcatcg |
104 |
Q |
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| T |
19386543 |
cactgatctcaactgcccggaaaacgcagacgaacttgctcatcg |
19386499 |
T |
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