View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5951_high_3 (Length: 678)

Name: NF5951_high_3
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5951_high_3
NF5951_high_3
[»] chr8 (8 HSPs)
chr8 (1-669)||(15230822-15231485)
chr8 (137-309)||(15249908-15250080)
chr8 (531-579)||(43485048-43485096)
chr8 (533-573)||(17642436-17642476)
chr8 (533-573)||(23286928-23286968)
chr8 (533-573)||(29454146-29454186)
chr8 (533-573)||(34332474-34332514)
chr8 (533-573)||(39171001-39171041)
[»] chr1 (9 HSPs)
chr1 (529-573)||(2247404-2247448)
chr1 (533-570)||(33910053-33910090)
chr1 (533-573)||(5956529-5956569)
chr1 (533-573)||(7122318-7122358)
chr1 (533-573)||(12105163-12105203)
chr1 (533-573)||(23061365-23061405)
chr1 (533-573)||(26010945-26010985)
chr1 (533-573)||(50239280-50239320)
chr1 (533-573)||(51977861-51977901)
[»] chr2 (9 HSPs)
chr2 (532-573)||(9122159-9122200)
chr2 (533-573)||(17451285-17451325)
chr2 (533-570)||(11813198-11813235)
chr2 (533-573)||(7673298-7673338)
chr2 (533-573)||(9589477-9589517)
chr2 (533-573)||(25331458-25331498)
chr2 (533-573)||(32602306-32602346)
chr2 (533-573)||(34665933-34665973)
chr2 (533-573)||(37909721-37909761)
[»] chr4 (8 HSPs)
chr4 (533-573)||(24979945-24979985)
chr4 (533-573)||(28038048-28038088)
chr4 (531-573)||(3763474-3763516)
chr4 (529-567)||(30891166-30891204)
chr4 (533-573)||(1857167-1857207)
chr4 (533-573)||(11109599-11109639)
chr4 (533-573)||(29364545-29364585)
chr4 (533-573)||(31908805-31908845)
[»] chr3 (8 HSPs)
chr3 (533-573)||(19547852-19547892)
chr3 (533-573)||(11140608-11140648)
chr3 (533-573)||(37520705-37520745)
chr3 (533-573)||(42067942-42067982)
chr3 (533-573)||(42479048-42479088)
chr3 (533-573)||(44653534-44653574)
chr3 (533-573)||(52082046-52082086)
chr3 (533-573)||(53289233-53289273)
[»] chr5 (4 HSPs)
chr5 (533-584)||(9604423-9604474)
chr5 (72-110)||(17821999-17822037)
chr5 (68-105)||(25537148-25537185)
chr5 (533-573)||(702313-702353)
[»] chr6 (4 HSPs)
chr6 (73-110)||(34672448-34672485)
chr6 (533-573)||(14779266-14779306)
chr6 (533-573)||(15383206-15383246)
chr6 (533-573)||(23416860-23416900)
[»] scaffold0625 (1 HSPs)
scaffold0625 (533-573)||(6269-6309)
[»] chr7 (7 HSPs)
chr7 (68-108)||(7809952-7809992)
chr7 (533-573)||(15716269-15716309)
chr7 (533-573)||(15954624-15954664)
chr7 (533-573)||(18990451-18990491)
chr7 (533-573)||(26605059-26605099)
chr7 (533-573)||(30936097-30936137)
chr7 (533-573)||(35291329-35291369)


Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Original strand, 15230822 - 15231485
Alignment:
Q  1 cgtggcgaatgtatcttcctatggtggaccacaatttactatgagtctcaaccttacacaggtaacctttatataaaatattgttcataatatacacgta 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15230822 cgtggctaatgtatcttcctatggtggaccacaatttactatgagtctcaaccttacacaggtaagctttatataaaatattgttcataatatacacgta 15230921  T
Q  101 ttagcgcaatnnnnnnnnnnnnncggacacgttttgttgtgtttcaggatccagctactaagaactggtggctaaaagcacaagacatggatgttggata 200  Q
    ||||||||||             |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15230922 ttagcgcaataaaaaaaaa----cggacacgttttgtcgtgtttcaggatccagctactaagaactggtggctaaaagcacaagacatggatgttggata 15231017  T
Q  201 ttttccagcatcattattttctaataaactagattttgcaatgaaagctggttggactggtcatacacagttttttcttgatggtccaagtcctccaatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15231018 ttttccagcatcattattttctaataaactagattttgcaatgaaagctggttggactggtcatacacagttttttcttgatggtccaagtcctccaatg 15231117  T
Q  301 ggttctggaattcttccagatggaaatcctcttcattcatgcttcatttcaaagatgtattttaaggatagatttagaaatgatcgtgcccctcttaaag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15231118 ggttctggaattcttccagatggaaatcctcttcattcatgctacatttcaaagatgtattttaaggatagatttagaaatgatcgtgcccctcttaaag 15231217  T
Q  401 atcagatgttagtgtatgctgataaccgtcgttgttatgatgcaaagtactatggttttgtggataataatttggaacgtgttatgatgtttgggggacc 500  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15231218 atcagatgctagtgtatgctgataaccgtcgttgttatgatgcaaagtactatggttttgtggataataatttggaacgtgttatgatgtttgggggacc 15231317  T
Q  501 aggtggaaattgtggtctttgaaaaagtttaaagtaccggtacaccttattttgtgggtgtactgtagaagttatcttaaaatagagagatccatgaatg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||| |||||||||  ||| ||||||||||||||| |||||    
T  15231318 aggtggaaattgtggtctttgaaaaagtttaaagtaccggtacacctcactttatgagtgtaccgtagaagtttcctttaaatagagagatcca-gaatg 15231416  T
Q  601 aataaaataaattgaaagtggtggtggatgatattgttcttaatcactatagcttaatgaaagtataat 669  Q
    ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  15231417 aataaaataaattgaaagttgtagtggatgatattgttctcaatcactatagcttaataaaagtataat 15231485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 137 - 309
Target Start/End: Original strand, 15249908 - 15250080
Alignment:
Q  137 ttgtgtttcaggatccagctactaagaactggtggctaaaagcacaagacatggatgttggatattttccagcatcattattttctaataaactagattt 236  Q
    |||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||      
T  15249908 ttgtgtttcaggatccaaacactaagaactggtggctaagagcacaagatatggatgttggatattttccagcaacattattttccaataaactagatca 15250007  T
Q  237 tgcaatgaaagctggttggactggtcatacacagttttttcttgatggtccaagtcctccaatgggttctgga 309  Q
    |||||  |||| ||||||||| ||||| |||||| |||||  |||||| || |||||||||||||||||||||    
T  15250008 tgcaagtaaaggtggttggacaggtcaaacacagatttttggtgatggccctagtcctccaatgggttctgga 15250080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 579
Target Start/End: Complemental strand, 43485096 - 43485048
Alignment:
Q  531 aaagtaccggtacaccttattttgtgggtgtactgtagaagttatctta 579  Q
    ||||||||||||||||||| |||| |||||||| ||||||||| |||||    
T  43485096 aaagtaccggtacaccttaatttgcgggtgtaccgtagaagttctctta 43485048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 17642436 - 17642476
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  17642436 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 17642476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 23286928 - 23286968
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  23286928 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 23286968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 29454186 - 29454146
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||||| |||||| |||||||||    
T  29454186 agtaccggtacaccttactttgtgagtgtaccgtagaagtt 29454146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 34332474 - 34332514
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  34332474 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 34332514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 39171041 - 39171001
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  39171041 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 39171001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 573
Target Start/End: Original strand, 2247404 - 2247448
Alignment:
Q  529 ttaaagtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||    
T  2247404 ttaaagtaccggtacaccttaatttgtgggtgtaccgtagaagtt 2247448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 33910053 - 33910090
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaa 570  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  33910053 agtaccggtacaccttaatttgtgggtgtaccgtagaa 33910090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 5956569 - 5956529
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    |||||||||||| |||| ||||||||||||| |||||||||    
T  5956569 agtaccggtacagcttaatttgtgggtgtaccgtagaagtt 5956529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 7122318 - 7122358
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  7122318 agtaccggtacactttaaattgtgggtgtactgtagaagtt 7122358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 12105203 - 12105163
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  12105203 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 12105163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 23061365 - 23061405
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  23061365 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 23061405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 26010985 - 26010945
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  26010985 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 26010945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 50239320 - 50239280
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  50239320 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 50239280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 51977901 - 51977861
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  51977901 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 51977861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 573
Target Start/End: Complemental strand, 9122200 - 9122159
Alignment:
Q  532 aagtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  9122200 aagtaccggtacaccttattttgtgagtgtaccgtagaagtt 9122159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 17451325 - 17451285
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  17451325 agtaccggtacaccttattttgtgagtgtaccgtagaagtt 17451285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Complemental strand, 11813235 - 11813198
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaa 570  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  11813235 agtaccggtacaccttaatttgtgggtgtaccgtagaa 11813198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 7673338 - 7673298
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  7673338 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 7673298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 9589477 - 9589517
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  9589477 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 9589517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 25331498 - 25331458
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  25331498 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 25331458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 32602346 - 32602306
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  32602346 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 32602306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 34665933 - 34665973
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  34665933 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 34665973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 37909721 - 37909761
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  37909721 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 37909761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 24979985 - 24979945
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  24979985 agtaccggtacaccttattttgtgagtgtaccgtagaagtt 24979945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 28038048 - 28038088
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  28038048 agtaccggtacaccttaatttgtgggtgtaccgtagaagtt 28038088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 3763474 - 3763516
Alignment:
Q  531 aaagtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||| |||||||||||||||| |||||| |||||||||    
T  3763474 aaagtaccgatacaccttattttgtgagtgtacggtagaagtt 3763516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 567
Target Start/End: Complemental strand, 30891204 - 30891166
Alignment:
Q  529 ttaaagtaccggtacaccttattttgtgggtgtactgta 567  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  30891204 ttaaagtaccggtacaccttaatttgtggatgtactgta 30891166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 1857167 - 1857207
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  1857167 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 1857207  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 11109639 - 11109599
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  11109639 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 11109599  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 29364545 - 29364585
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  29364545 agtaccggtacacctcattttgtgagtgtacagtagaagtt 29364585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 31908805 - 31908845
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  31908805 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 31908845  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 19547852 - 19547892
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  19547852 agtaccggtacaccttaatttgtgggtgtaccgtagaagtt 19547892  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 11140608 - 11140648
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  11140608 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 11140648  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 37520745 - 37520705
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  37520745 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 37520705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 42067942 - 42067982
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  42067942 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 42067982  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 42479048 - 42479088
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||||||||||  ||||| |||||||||    
T  42479048 agtaccggtacaccttattttgtgaatgtaccgtagaagtt 42479088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 44653534 - 44653574
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  44653534 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 44653574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 52082086 - 52082046
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  52082086 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 52082046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 53289273 - 53289233
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  53289273 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 53289233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 584
Target Start/End: Complemental strand, 9604474 - 9604423
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagttatcttaaaata 584  Q
    ||||||||||||||| |||||||| |||||| ||||||||| ||| ||||||    
T  9604474 agtaccggtacacctcattttgtgagtgtaccgtagaagttctctaaaaata 9604423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 17822037 - 17821999
Alignment:
Q  72 tataaaatattgttcataatatacacgtattagcgcaat 110  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  17822037 tataaaatattgttaataatctacacgtattagcgcaat 17821999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 25537148 - 25537185
Alignment:
Q  68 tttatataaaatattgttcataatatacacgtattagc 105  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  25537148 tttatataaaatattgttcataatttacacgtgttagc 25537185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 702313 - 702353
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  702313 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 702353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 34672485 - 34672448
Alignment:
Q  73 ataaaatattgttcataatatacacgtattagcgcaat 110  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  34672485 ataaaatattgttcataatttacacgcattagcgcaat 34672448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 14779266 - 14779306
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||| ||| |||||||| ||||||||||||||||    
T  14779266 agtaccggtacccctcattttgtgagtgtactgtagaagtt 14779306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 15383246 - 15383206
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  15383246 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 15383206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 23416860 - 23416900
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  23416860 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 23416900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 6309 - 6269
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  6309 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 6269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 7809992 - 7809952
Alignment:
Q  68 tttatataaaatattgttcataatatacacgtattagcgca 108  Q
    |||||||||||||| ||||||||| ||||||| ||||||||    
T  7809992 tttatataaaatatcgttcataatttacacgtgttagcgca 7809952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 15716269 - 15716309
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  15716269 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 15716309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 15954624 - 15954664
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  15954624 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 15954664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 18990451 - 18990491
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  18990451 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 18990491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 26605099 - 26605059
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  26605099 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 26605059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 30936137 - 30936097
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  30936137 agtaccggtacaccttaatttgcgggtgtaccgtagaagtt 30936097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 35291369 - 35291329
Alignment:
Q  533 agtaccggtacaccttattttgtgggtgtactgtagaagtt 573  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  35291369 agtaccggtacacctcattttgtgagtgtaccgtagaagtt 35291329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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