View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_high_33 (Length: 227)
Name: NF5951_high_33
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_high_33 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48096289 - 48096063
Alignment:
| Q |
1 |
caatctggaaatcaagtagcagaaaaagtaacnnnnnnntaataacttttcaaaatcagggtgagtttcatgtgtgaaagctatagctataatttttaat |
100 |
Q |
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| T |
48096289 |
caatctggaaatgaagtagcagaaaaagtaagaaaaaaataataacttttcaaaatcagggggagtttcatttgtgaaagctatagctataatttttaat |
48096190 |
T |
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| Q |
101 |
tgaatttttctatcccctgttcaatttctttaatttgcacaaatgcatgtcttaacacctattttccacttttcaccgatcaaagttccaactttataag |
200 |
Q |
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| T |
48096189 |
tgaatttttctatcccctgttcaatttctttaatttgcacaaatgcatgtcttaacacctattttccacttttcaccaatcaaagttccaactttataag |
48096090 |
T |
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| Q |
201 |
tattacctcaaatacaaaacacgatac |
227 |
Q |
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| T |
48096089 |
tattacctcaaatacaaaacacgatac |
48096063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 39883320 - 39883501
Alignment:
| Q |
40 |
taataacttttcaaaatcagggtgagtttcatgtgtgaaagctatagctataatttttaattgaatttttctatcccctgttcaatttctttaatttgca |
139 |
Q |
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||||||||| |||||||||||| ||| ||||||||||||||||||| || ||| ||||||||||||||||||||| |||||||| |||||||||| |
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| T |
39883320 |
taataacttctcaaaatcagggggagcttcatgtgtgaaagctataact------tttgattgaatttttctatcccctgctcaatttcattaatttgca |
39883413 |
T |
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| Q |
140 |
caaatgcatgtcttaacacctattttccacttttcaccgatcaaagttccaactttataagtattacctcaaatacaaaacacgatac |
227 |
Q |
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| T |
39883414 |
caaatgcatatcttaacacctattttccacttttcaccaatcaaaattccaactttataagtatttccccaaatacaaaacatgatac |
39883501 |
T |
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