View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_1 (Length: 791)
Name: NF5951_low_1
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 758; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 18 - 779
Target Start/End: Complemental strand, 45596040 - 45595279
Alignment:
| Q |
18 |
cttatatcacattacacttgcgctatgagaaggatatgcttgcattcagcggctgcacgcatgatttatcaacttctgaggccaaggaactacggattat |
117 |
Q |
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| T |
45596040 |
cttatatcacattacacttgcgctatgagaaggatatgcttgcattcagcggctgcacgcatgatttatcaacttctgaggccaaggaactacggattat |
45595941 |
T |
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| Q |
118 |
caggtaatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaacttacagagagaatacta |
217 |
Q |
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| T |
45595940 |
caggtaatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaacttacagagagaatacta |
45595841 |
T |
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| Q |
218 |
cttattggaaaagaaagcacatcaatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttgg |
317 |
Q |
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| T |
45595840 |
cttattggaaaagaaagcacatcgatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttgg |
45595741 |
T |
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| Q |
318 |
ataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagc |
417 |
Q |
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| T |
45595740 |
ataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagc |
45595641 |
T |
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| Q |
418 |
aaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttatttaatctacatgtaactaat |
517 |
Q |
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| T |
45595640 |
aaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttatttaatctacatgtaactaat |
45595541 |
T |
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| Q |
518 |
atcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgt |
617 |
Q |
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| T |
45595540 |
atcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgt |
45595441 |
T |
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| Q |
618 |
atttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttctccagataggtgagcctct |
717 |
Q |
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| T |
45595440 |
atttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttctccagataggtgagcctct |
45595341 |
T |
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| Q |
718 |
ctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgct |
779 |
Q |
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| T |
45595340 |
ctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgct |
45595279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 249 - 422
Target Start/End: Complemental strand, 27151508 - 27151335
Alignment:
| Q |
249 |
agaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgct |
348 |
Q |
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| T |
27151508 |
agaacagaggtccaaagggttttgccccttaacaccaaaggaagttggaatttttcttactgctcttggatatccatcaaagacgccgatatatattgct |
27151409 |
T |
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| Q |
349 |
gcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
422 |
Q |
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| T |
27151408 |
gctggagagatttatgggggtgagtcccatatggctgaactgcgatcccgttatccattgttaatgagcaaggt |
27151335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 514 - 680
Target Start/End: Complemental strand, 27149117 - 27148951
Alignment:
| Q |
514 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
613 |
Q |
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| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
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| Q |
614 |
atgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgg |
680 |
Q |
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| T |
27149017 |
atgtatttataccctcttattctggaaacatggcaagggctgttgaaggtcatcgccgttttcttgg |
27148951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 27151723 - 27151677
Alignment:
| Q |
41 |
tatgagaaggatatgcttgcattcagcggctgcacgcatgatttatc |
87 |
Q |
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| T |
27151723 |
tatgagaaggatatgcttgcatttagtgggtgtacgcatgatttatc |
27151677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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