View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_10 (Length: 432)
Name: NF5951_low_10
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 44588705 - 44589108
Alignment:
| Q |
20 |
ccagtcatagtcttattttattacccttaagatcttgaacttcattgtatagtttacgattttcttcaagaactctatgatatccagaagcagcgtgagc |
119 |
Q |
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| T |
44588705 |
ccagtcatagtcttattttattacccttaagatcttgaacttcattgtatagtttacgattttcttcaagaactctatgatatccagaagcagcgtgagc |
44588804 |
T |
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| Q |
120 |
taagccacgaatgtgcgttcctgcnnnnnnnncaaagttatgtaagattcagcatctcattcttcnnnnnnnnn-gattcagcatctcatccatctgtca |
218 |
Q |
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| T |
44588805 |
taagccacgaatgtgcgttcctgcaaaaaaaacaaagttatgtaagattcagcatctcattcttcaaaaaaaaaagattcagcatctcatccatctgtca |
44588904 |
T |
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| Q |
219 |
gaagagaccaagcgaaggaggggaacaaaagcaagaaaggtagaatgattttatcacaaatccttaccaagattggtaaactcatcacgaaatttcattt |
318 |
Q |
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| T |
44588905 |
gaaaacaccaagcgaaggaggggaacaaaagcaagaaaggtagaatgattttatcacaaatccttaccaagattggtaaactcgtcacgaaatttcattt |
44589004 |
T |
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| Q |
319 |
gcatgaactgcattccagcttttgtggtgtgaagagtaagctttagctcctacaaattatgaaaagcgaaaattttaactcacgggaaaatctgcatagt |
418 |
Q |
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| T |
44589005 |
gcatgaactgcattccagcttttgtggtgtgaagagtaagctttagctcctacaaaatatgaaaagcaaaaattttaactcacgggaaaatctgcatagt |
44589104 |
T |
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| Q |
419 |
ataa |
422 |
Q |
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| T |
44589105 |
ataa |
44589108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 46216075 - 46216003
Alignment:
| Q |
40 |
ttacccttaagatcttgaacttcattgtatagtttacgattttcttcaagaactctatgatatccagaagcag |
112 |
Q |
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| T |
46216075 |
ttacctttcagatcctgcacttgattgtataacttgcggttttcttcaagaactttatgatatccagaagcag |
46216003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 39341068 - 39340972
Alignment:
| Q |
39 |
attacccttaagatcttgaacttcattgtatagtttacgattttcttcaagaactctatgatatccagaagcagcgtgagctaagccacgaatgtgc |
135 |
Q |
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| T |
39341068 |
attacccttaagatcctggacttcattgtatagtttgcgattttcttcgagaactctatgatatccagaagcagcatgagctaagccgtgaatgtgc |
39340972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 39340835 - 39340768
Alignment:
| Q |
307 |
gaaatttcatttgcatgaactgcattccagcttttgtggtgtgaagagtaagctttagctcctacaaa |
374 |
Q |
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||||||||||||||||||||||||| |||||||| || || |||| ||| |||||| ||||||||| |
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| T |
39340835 |
gaaatttcatttgcatgaactgcataccagctttggtagtttgaactgtatgctttaattcctacaaa |
39340768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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