View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_11 (Length: 427)
Name: NF5951_low_11
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 25 - 427
Target Start/End: Complemental strand, 50909751 - 50909359
Alignment:
| Q |
25 |
gtttagcctattttcaagttaaataaatctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgcccccaaaattgatttataaat |
124 |
Q |
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| T |
50909751 |
gtttagcctattttcaagttaaat----ctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgtcccccaaattgatttataaat |
50909656 |
T |
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| Q |
125 |
caatcttaattcttacacatcttgattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgcaaattcataatttttaaca |
224 |
Q |
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| T |
50909655 |
caatcttaattcttacacatcttgattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgcaaattcataatttttaaca |
50909556 |
T |
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| Q |
225 |
tattcaaatttcaaaatctttgtgtaaaatacattttttaagacttttacacatccggactttgaaattcgaatgcgtgaaattcagttttctcgttgaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50909555 |
tattcaaatttcaaaatctttgtgtaaaatacattttttaagacttttacacatccggactttgaaattcgaatgcgtgaaattcacttttctcgttgaa |
50909456 |
T |
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| Q |
325 |
atatgctgccatagtgtatgcgtctctatgctgaatctcaagttcaaacaagtggagaccacattttctatgtgtgtaagcaagcagttgaatagttttt |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||||| |
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| T |
50909455 |
atatgctgccatagtgtatgcgtctctatgctgaatctcaagttcaaacaagttgagaccacattttctgtgt------gcaagcagttgactagttttt |
50909362 |
T |
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