View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5951_low_12 (Length: 424)

Name: NF5951_low_12
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5951_low_12
NF5951_low_12
[»] chr8 (10 HSPs)
chr8 (182-382)||(42898910-42899110)
chr8 (10-108)||(42899145-42899245)
chr8 (285-338)||(40589105-40589158)
chr8 (121-212)||(478172-478264)
chr8 (285-352)||(478446-478513)
chr8 (147-245)||(13414964-13415068)
chr8 (112-179)||(7127236-7127303)
chr8 (112-212)||(8451230-8451331)
chr8 (147-245)||(23853873-23853977)
chr8 (147-212)||(40588872-40588938)
[»] chr1 (10 HSPs)
chr1 (116-245)||(44527194-44527329)
chr1 (112-245)||(36733637-36733776)
chr1 (285-338)||(4394903-4394956)
chr1 (285-338)||(5609083-5609136)
chr1 (285-376)||(36733399-36733490)
chr1 (285-338)||(44527009-44527062)
chr1 (121-245)||(48166178-48166308)
chr1 (285-343)||(51113054-51113112)
chr1 (112-212)||(5609318-5609419)
chr1 (112-180)||(44602764-44602832)
[»] chr6 (10 HSPs)
chr6 (285-376)||(19364335-19364426)
chr6 (134-245)||(15053304-15053421)
chr6 (112-245)||(15606101-15606240)
chr6 (285-340)||(29368426-29368481)
chr6 (286-343)||(11732041-11732098)
chr6 (157-211)||(11731818-11731873)
chr6 (122-212)||(28107118-28107209)
chr6 (116-178)||(14680176-14680238)
chr6 (116-178)||(29368167-29368229)
chr6 (147-212)||(30802133-30802199)
[»] chr3 (7 HSPs)
chr3 (116-245)||(53496973-53497108)
chr3 (285-376)||(53496750-53496841)
chr3 (112-181)||(11020287-11020356)
chr3 (147-238)||(27941136-27941233)
chr3 (123-245)||(55199452-55199580)
chr3 (117-179)||(2615506-2615568)
chr3 (290-376)||(55199226-55199312)
[»] chr4 (22 HSPs)
chr4 (155-245)||(41835461-41835557)
chr4 (112-214)||(49951290-49951393)
chr4 (112-211)||(2064833-2064933)
chr4 (117-212)||(51735083-51735179)
chr4 (116-245)||(21321468-21321603)
chr4 (285-338)||(21321271-21321324)
chr4 (112-245)||(18442252-18442391)
chr4 (285-376)||(18442534-18442625)
chr4 (112-179)||(37245959-37246026)
chr4 (285-352)||(51259920-51259987)
chr4 (112-245)||(55734950-55735089)
chr4 (285-352)||(56065359-56065426)
chr4 (120-245)||(56065570-56065701)
chr4 (112-212)||(29655773-29655874)
chr4 (285-376)||(28538175-28538266)
chr4 (285-352)||(55734739-55734806)
chr4 (117-179)||(28426196-28426258)
chr4 (117-179)||(49119512-49119574)
chr4 (285-338)||(29656055-29656108)
chr4 (151-245)||(43840453-43840553)
chr4 (285-343)||(49951052-49951110)
chr4 (112-168)||(47226437-47226493)
[»] chr5 (15 HSPs)
chr5 (116-245)||(4268040-4268175)
chr5 (112-245)||(15988856-15988995)
chr5 (112-211)||(25730788-25730888)
chr5 (285-338)||(15989139-15989192)
chr5 (285-376)||(27533297-27533388)
chr5 (116-245)||(11375624-11375759)
chr5 (285-343)||(20204694-20204752)
chr5 (117-245)||(22767369-22767503)
chr5 (285-338)||(25730585-25730638)
chr5 (285-376)||(8387792-8387883)
chr5 (112-178)||(41940843-41940909)
chr5 (285-338)||(4267855-4267908)
chr5 (117-212)||(27292413-27292509)
chr5 (112-245)||(12660257-12660396)
chr5 (122-180)||(8388098-8388156)
[»] chr2 (11 HSPs)
chr2 (285-376)||(88265-88356)
chr2 (116-208)||(12130749-12130842)
chr2 (117-245)||(34696016-34696148)
chr2 (285-352)||(34696292-34696359)
chr2 (117-245)||(34718428-34718560)
chr2 (285-352)||(34718704-34718771)
chr2 (151-245)||(44017464-44017564)
chr2 (116-179)||(88572-88635)
chr2 (285-376)||(18345864-18345955)
chr2 (116-181)||(18345598-18345662)
chr2 (122-180)||(9709941-9709999)
[»] chr7 (9 HSPs)
chr7 (154-239)||(29201104-29201197)
chr7 (285-338)||(17877161-17877214)
chr7 (285-338)||(22288985-22289038)
chr7 (285-352)||(1581345-1581412)
chr7 (285-352)||(16731663-16731730)
chr7 (285-352)||(17709797-17709864)
chr7 (117-178)||(9328714-9328775)
chr7 (112-212)||(16731912-16732013)
chr7 (112-212)||(17710046-17710147)
[»] scaffold0446 (1 HSPs)
scaffold0446 (120-212)||(165-258)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 182 - 382
Target Start/End: Complemental strand, 42899110 - 42898910
Alignment:
Q  182 gctgtcatcttgtttgagcccgtataaattggcgagtctctaatacaacacgcaaaagttgtaactgtcatggaacatccacattgcacttcaaccacat 281  Q
    |||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42899110 gctgtcattttgtttgagcccgtataaattgccgagtctctaacacaacatgcaaaagttgtaacggtcatggaacatccacattgcacttcaaccacat 42899011  T
Q  282 ccacattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaatgtatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||||||    
T  42899010 ccacattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcattcgaaatcgcataattacgtgtagtccaaatgtatt 42898911  T
Q  382 a 382  Q
    |    
T  42898910 a 42898910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 42899245 - 42899145
Alignment:
Q  10 ataattcttgaaacatgaacaataacaatttt--aaataatcatgatcttgagactatagagttgcattggagaatagatgagtcggactcgaatacaat 107  Q
    ||||| ||||||||| |||||| || ||||||  |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  42899245 ataatacttgaaacaggaacaacaagaattttttaaataatcatgaccttgagacgatagagttgcattggagagtagatgagtcggactcgaatacaat 42899146  T
Q  108 c 108  Q
    |    
T  42899145 c 42899145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 40589105 - 40589158
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  40589105 cattgttgccatgcatctagtgtcgtcctcccaatgcttgttgaagtatgatga 40589158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 478172 - 478264
Alignment:
Q  121 agcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg 212  Q
    |||||||||||  |||| ||||||  |||||| ||||||||||||||||||||||||||  || || ||| ||||||||||||| ||||||||    
T  478172 agcaaagtgaatggcatcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgttgccattttgtttgagcccggataaattg 478264  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 478446 - 478513
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaat 352  Q
    |||||||||||||||||||||| |||||| |||||||| ||||| ||||||||| |||| ||| ||||    
T  478446 cattgctgccatgcatctagtgccgtccttccaatgcttgttgaagtatgatgagcgtcattccaaat 478513  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 13415068 - 13414964
Alignment:
Q  147 ctactgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaattg---gcg--agtctctaatacaacacgcaaaagt 240  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||||||||   |||  ||||||||| | ||||| |||||||    
T  13415068 ctactgcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgcccgcgaaagtctctaaaaaaacacacaaaagt 13414969  T
Q  241 tgtaa 245  Q
    |||||    
T  13414968 tgtaa 13414964  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 7127303 - 7127236
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg 179  Q
    |||| ||||||||||||||| ||||| ||||||  |||||  |||||||||||||||| |||||||||    
T  7127303 gttcacatcagcaaagtgaatagcatcgagtaaggctactacctccccctccaaaactttcatatttg 7127236  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 8451230 - 8451331
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaat 210  Q
    |||| ||||||| |||||||  | || ||||||| |||||| |||||||||||| |||||||||||||  ||||  | | ||||||||||||| ||||||    
T  8451230 gttcacatcagcgaagtgaatggaatcgagtaaagctactgcctccccctccaacactgtcatatttgcccgcttcctttttgtttgagcccgaataaat 8451329  T
Q  211 tg 212  Q
    ||    
T  8451330 tg 8451331  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 23853977 - 23853873
Alignment:
Q  147 ctactgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaattg-----gcgagtctctaatacaacacgcaaaagt 240  Q
    |||||| ||| ||||||||||||||||||||| | ||||||||| | |||||| |||| ||||||||     | |||||||||| | ||||||||||||     
T  23853977 ctactgcctcaccctccaaaactgtcatatttttccgctgtcatttcgtttgaacccgaataaattgcccacgggagtctctaacataacacgcaaaaga 23853878  T
Q  241 tgtaa 245  Q
    |||||    
T  23853877 tgtaa 23853873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 40588872 - 40588938
Alignment:
Q  147 ctactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg 212  Q
    |||||| |||||||||||||||||| |||||||  ||||| ||| | ||||||||||| ||||||||    
T  40588872 ctactgcctccccctccaaaactgttatatttgcccgctgccatttcgtttgagcccgaataaattg 40588938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 44527329 - 44527194
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaattggc 214  Q
    ||||||||||||||||| || |  |||||  |||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||| |    
T  44527329 gcatcagcaaagtgaagggcctctagtaaggctactgcctccccctccaaaactgtcatatttgtccgctgccattttgtttgagcccgaataaattgcc 44527230  T
Q  215 -----gagtctctaatacaacacgcaaaagttgtaa 245  Q
         |||||||||| |||||||||||||| |||||    
T  44527229 cacaagagtctctaacacaacacgcaaaagatgtaa 44527194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 36733776 - 36733637
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatattt-gtcgctgtcatcttgtttgagcccgtataaat 210  Q
    |||| ||||||||||||||| | |||||||||| ||||||| ||||||||||||||||| |||||||   || |||||| ||||||||||||| ||||||    
T  36733776 gttcacatcagcaaagtgaataacattgagtaagactactgcctccccctccaaaactgccatatttacccgttgtcattttgtttgagcccgaataaat 36733677  T
Q  211 tg-----gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
    ||     | |||||||||| ||||||| |||||| |||||    
T  36733676 tgtccacgagagtctctaacacaacacacaaaaggtgtaa 36733637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 4394956 - 4394903
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  4394956 cattgttgtcatgcatctagtgccgtcctcccaatgctcgttgatgtatgatga 4394903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 5609136 - 5609083
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  5609136 cattgctaccatgcatctagtgtcgtcctcccaatgctcaatgatgtatgatga 5609083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 36733490 - 36733399
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    ||||||||||||||||||||||| ||||| || ||| | ||||| |||||||||||||| ||| ||||  ||| |||| ||| |||||||||    
T  36733490 cattgctgccatgcatctagtgttgtccttccgatgtttgttgaagtatgatgaacgtcattccaaatgacatcattacgtgcagcccaaat 36733399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 44527062 - 44527009
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||    
T  44527062 cattgttgccatgcatctagtgttgtcctcccaatgctcgttgaagtgtgatga 44527009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 48166308 - 48166178
Alignment:
Q  121 agcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg-----gc 214  Q
    |||||||||||   ||| ||||||  ||| |||||||| |||||||||||||||||||| |||||| ||| |  |||||||||| ||||||||     |     
T  48166308 agcaaagtgaatgacatcgagtaaggctattgtctcccactccaaaactgtcatatttgctcgctgccatttcatttgagcccgaataaattgaccacgg 48166209  T
Q  215 gagtctctaatacaacacgcaaaagttgtaa 245  Q
    |||||||||| ||||||| |||||| |||||    
T  48166208 gagtctctaacacaacacacaaaagatgtaa 48166178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 51113112 - 51113054
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtc 343  Q
    ||||||||||||||||||||||  |||||||| ||||| ||||| || |||||||||||    
T  51113112 cattgctgccatgcatctagtgctgtcctcccgatgcttgttgaagtgtgatgaacgtc 51113054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 5609419 - 5609318
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaat 210  Q
    ||||||| || ||||||||||  | | ||||||  |||||| |||||||| ||||||| |||||||||| |||||||||   ||||||||||| ||||||    
T  5609419 gttcgcaacatcaaagtgaaggacctcgagtaaggctactgcctcccccttcaaaactatcatatttgtccgctgtcatagagtttgagcccgaataaat 5609320  T
Q  211 tg 212  Q
    ||    
T  5609319 tg 5609318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 44602832 - 44602764
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgt 180  Q
    |||| |||||| ||||||||   ||| |||||| |||| ||||||||||||||||| ||||||||||||    
T  44602832 gttcacatcagtaaagtgaatgacatcgagtaagactaatgtctccccctccaaaattgtcatatttgt 44602764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 19364335 - 19364426
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||  ||| |||| ||| |||||||||    
T  19364335 cattgttgtcatgcatctagtgttgtcctcccaatgctcgttgaagtatgatgaacgtcgttcaaaatgacatcattacgtgcagcccaaat 19364426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 15053304 - 15053421
Alignment:
Q  134 gcattgagtaaaactactgtctccccctccaaaactgtcatatttgtc-gctgtcatcttgtttgagcccgtataaattggc-----gagtctctaatac 227  Q
    |||| ||||||  |||||| |||||||||||| ||| ||||||||  | |||||||||||||||||||||| |||||||| |      ||||||||| ||    
T  15053304 gcatcgagtaaggctactgcctccccctccaacactatcatatttacccgctgtcatcttgtttgagcccgaataaattgtccactgaagtctctaacac 15053403  T
Q  228 aacacgcaaaagttgtaa 245  Q
    |||||||||||| |||||    
T  15053404 aacacgcaaaagatgtaa 15053421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 15606101 - 15606240
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcat-atttgtcgctgtcatcttgtttgagcccgtataaat 210  Q
    |||| ||||| |||||||||  |||| ||||||  |||||| |||||||||||||||||||||  |||  ||||| ||| ||||||||||||| |||| |    
T  15606101 gttcccatcaacaaagtgaatggcatcgagtaaggctactgcctccccctccaaaactgtcatgttttcccgctgccattttgtttgagcccgaataagt 15606200  T
Q  211 tg-----gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
    ||     | |||||||||| |||||||| ||||| |||||    
T  15606201 tgcccatgggagtctctaacacaacacgaaaaagatgtaa 15606240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 29368426 - 29368481
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaac 340  Q
    |||||||| |||||||||||||| ||||||||||||||| || | |||||||||||    
T  29368426 cattgctgtcatgcatctagtgttgtcctcccaatgctcattcaggtatgatgaac 29368481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 11732041 - 11732098
Alignment:
Q  286 attgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtc 343  Q
    |||||| ||||||||||| ||| ||||||||||||||| |||| ||||| ||||||||    
T  11732041 attgctcccatgcatctattgttgtcctcccaatgctcattgaagtatgttgaacgtc 11732098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 11731818 - 11731873
Alignment:
Q  157 cccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaatt 211  Q
    |||||||||||||||||||||||  ||||| ||| ||||||||||||| |||||||    
T  11731818 cccctccaaaactgtcatatttgcccgctgccattttgtttgagcccggataaatt 11731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 28107209 - 28107118
Alignment:
Q  122 gcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaattg 212  Q
    ||||||||||  ||||  |||||  |||||| ||||||||||||||||||||||| ||| ||||| ||| | ||||||||| | ||||||||    
T  28107209 gcaaagtgaatggcatcaagtaaggctactgcctccccctccaaaactgtcatatctgtccgctgccatttcgtttgagcctgaataaattg 28107118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 14680238 - 14680176
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatattt 178  Q
    ||||||||| ||||||| || | ||||||  |||||| |||||||||||| ||||||||||||    
T  14680238 gcatcagcagagtgaagggcctcgagtaaggctactgcctccccctccaatactgtcatattt 14680176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 29368167 - 29368229
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatattt 178  Q
    ||||||||||||||||| || | ||||||   || || |||||||||||||||||||||||||    
T  29368167 gcatcagcaaagtgaagggcctcgagtaaggatattgcctccccctccaaaactgtcatattt 29368229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 30802133 - 30802199
Alignment:
Q  147 ctactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg 212  Q
    |||||| ||||||| ||||||||||||||||||  ||||| ||| |||||| |||||| ||||||||    
T  30802133 ctactgcctcccccaccaaaactgtcatatttgcccgctgccattttgtttaagcccgaataaattg 30802199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 53497108 - 53496973
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaattggc 214  Q
    ||||||||||||||||| || |  |||||  |||||| ||||||||| |||||||||| |||||| ||||||||| ||||||||||||| |||||||| |    
T  53497108 gcatcagcaaagtgaagggcctctagtaaggctactgcctccccctcaaaaactgtcacatttgtccgctgtcattttgtttgagcccgaataaattgcc 53497009  T
Q  215 -----gagtctctaatacaacacgcaaaagttgtaa 245  Q
         |||||||||| |||||||||||||| |||||    
T  53497008 cacaagagtctctaacacaacacgcaaaagatgtaa 53496973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 53496841 - 53496750
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || |||||| | || ||| ||||  ||| |||| ||| |||||||||    
T  53496841 cattgctgccatgcatctagtgttgtcctcccaatgctcgttgaagtgtgatgagcatcattccaaatgacatcattacgtgcagcccaaat 53496750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 11020287 - 11020356
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgtc 181  Q
    |||| |||||||||||| || ||||| ||||||| ||  ||||||||||||||||| |||||||||||||    
T  11020287 gttcccatcagcaaagtaaatagcatcgagtaaagctgatgtctccccctccaaaagtgtcatatttgtc 11020356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 27941136 - 27941233
Alignment:
Q  147 ctactgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaattg-----gcgagtctctaatacaacacgcaaaa 238  Q
    |||||| |||||||||||||||| |||||||||| ||||| ||| ||||||||| ||| ||||||||     | || |||||||||||||||||||||    
T  27941136 ctactgcctccccctccaaaactatcatatttgtccgctgccattttgtttgagtccgaataaattgtcctcgagaatctctaatacaacacgcaaaa 27941233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 55199580 - 55199452
Alignment:
Q  123 caaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgtc-gctgtcatcttgtttgagcccgtataaattg-----gcga 216  Q
    |||||||||  |||| ||||||  | |||| ||||||||||||||||||||||||| || |||||||| | ||||||||||| || |||||     | ||    
T  55199580 caaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttatcagctgtcatttcgtttgagcccgaatgaattgcccacggga 55199481  T
Q  217 gtctctaatacaacacgcaaaagttgtaa 245  Q
    |||||||| ||||||||| |||| |||||    
T  55199480 gtctctaacacaacacgcgaaagatgtaa 55199452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 2615568 - 2615506
Alignment:
Q  117 catcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg 179  Q
    |||||||||||||||   ||| ||||||  |||||| |||||||||||||||| |||||||||    
T  2615568 catcagcaaagtgaacgacatcgagtaaggctactgcctccccctccaaaactatcatatttg 2615506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 55199312 - 55199226
Alignment:
Q  290 ctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    |||||||||||||||||| |||||||| ||||| ||||| || ||||||  ||| ||| ||||  ||| |||| ||| |||||||||    
T  55199312 ctgccatgcatctagtgttgtcctcccgatgcttgttgaagtgtgatgagtgtcattccaaatgacatcattacgtgcagcccaaat 55199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 41835461 - 41835557
Alignment:
Q  155 tccccctccaaaactgtcatatttgtc-gctgtcatcttgtttgagcccgtataaattg-----gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||     | |||||||||| ||||||||||||||||||||    
T  41835461 tccccctccaaaactgtcatatttgccagctgtcattttgtttgagcccgaataaattgtctgcgagagtctctaacacaacacgcaaaagttgtaa 41835557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 49951393 - 49951290
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaat 210  Q
    ||||||||||||||||||||| || | ||||||  |||||| |||||||||||| |||||||||||||  ||||| ||| | ||||||||||| ||||||    
T  49951393 gttcgcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctccaatactgtcatatttgcccgctgccatttcgtttgagcccgaataaat 49951294  T
Q  211 tggc 214  Q
    ||||    
T  49951293 tggc 49951290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 2064933 - 2064833
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaat 210  Q
    |||| |||||||||||||||| || | ||||||  |||||| |||||||| ||| |||||||||||||  ||||||||| ||||||||||||| ||||||    
T  2064933 gttctcatcagcaaagtgaagggcgtcgagtaaggctactgcctcccccttcaatactgtcatatttgcccgctgtcattttgtttgagcccgaataaat 2064834  T
Q  211 t 211  Q
    |    
T  2064833 t 2064833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 51735083 - 51735179
Alignment:
Q  117 catcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg 212  Q
    |||||||||||||||  |||| ||||||  |||||| ||||||||||||||||||||||||||  ||||||||| | |||| |||||| ||||||||    
T  51735083 catcagcaaagtgaatggcatcgagtaaggctactgcctccccctccaaaactgtcatatttgcacgctgtcatttcgtttaagcccgaataaattg 51735179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 21321603 - 21321468
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaatt--- 211  Q
    ||||||| ||||||||| || | ||||||  ||| |||||||||||||||||||||||||||||  || || ||| | ||||||||||| |||||||       
T  21321603 gcatcagaaaagtgaagggcctcgagtaaggctattgtctccccctccaaaactgtcatatttgcccgttgccatttcgtttgagcccgaataaatttcc 21321504  T
Q  212 --ggcgagtctctaatacaacacgcaaaagttgtaa 245  Q
       | ||||||||||||||||| |||||||||||||    
T  21321503 cgcgagagtctctaatacaacatgcaaaagttgtaa 21321468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 21321324 - 21321271
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  21321324 cattgctgccaagcatctagtgctgtcctcccaatgctcgttgatgtatgatga 21321271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 18442252 - 18442391
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcata-tttgtcgctgtcatcttgtttgagcccgtataaat 210  Q
    ||||||| |||||||||| || || | ||||||  |||||| |||||||||||| ||||||||| |||  ||||  ||| | ||||||||||| ||||||    
T  18442252 gttcgcaacagcaaagtgtagggcctcgagtaaggctactgcctccccctccaatactgtcatattttcccgcttccatttcgtttgagcccgaataaat 18442351  T
Q  211 tg-----gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
    ||     | |||||||||| ||||||||||||||||||||    
T  18442352 tgcccatgggagtctctaacacaacacgcaaaagttgtaa 18442391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 18442534 - 18442625
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    ||||| |||||||||| |||||| ||||||||||||||| || | ||||||||| |||| ||| ||||  ||| |||| |||||||||||||    
T  18442534 cattgttgccatgcatatagtgttgtcctcccaatgctcattaaagtatgatgagcgtcattccaaatgacatcattacgtgtagcccaaat 18442625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 37245959 - 37246026
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg 179  Q
    |||| ||| ||||||||||| ||||| ||||||  |||||| ||||||||||||||||||||||||||    
T  37245959 gttcacataagcaaagtgaatagcatcgagtaaggctactgcctccccctccaaaactgtcatatttg 37246026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 51259920 - 51259987
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaat 352  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| || |||||| |||| ||| ||||    
T  51259920 cattgctgccatgcatctagtgttgtcctcccaatgcttgttgaagtgtgatgagcgtcattccaaat 51259987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 55735089 - 55734950
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaat 210  Q
    ||||||| || |||||||||| || | ||||||  |||||| |||||||||||| ||||||||||||| |||||  ||| | ||||||||||| | ||||    
T  55735089 gttcgcaacaacaaagtgaagggcctcgagtaaggctactgcctccccctccaatactgtcatatttgctcgcttccatttcgtttgagcccgaacaaat 55734990  T
Q  211 tg-----gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
    ||     | |||||||||| |||||||||||||| |||||    
T  55734989 tgctcatgggagtctctaacacaacacgcaaaagatgtaa 55734950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 56065426 - 56065359
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaat 352  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| || |||||| |||| ||| ||||    
T  56065426 cattgctgccatgcatctagtgttgtcctcccaatgcttgttgaagtgtgatgagcgtcattccaaat 56065359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 56065701 - 56065570
Alignment:
Q  120 cagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg-----g 213  Q
    ||||||||||||  |||| ||||||  | |||| |||||||||||||||||||||||||| ||| |||||| | ||||||||||| || |||||     |    
T  56065701 cagcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacg 56065602  T
Q  214 cgagtctctaatacaacacgcaaaagttgtaa 245  Q
     |||||||||| ||||||||| |||| |||||    
T  56065601 ggagtctctaaaacaacacgcgaaagatgtaa 56065570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 29655773 - 29655874
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaat 210  Q
    |||| |||||||||||||||   ||| ||||||  |||||| ||| ||||||||||| ||||||||||  ||||| ||| ||||||||||||| ||||||    
T  29655773 gttcacatcagcaaagtgaatgacatcgagtaaggctactgcctctccctccaaaacagtcatatttgcccgctgccattttgtttgagcccgaataaat 29655872  T
Q  211 tg 212  Q
    ||    
T  29655873 tg 29655874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 28538175 - 28538266
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    ||||| || |||||||||||||| ||||| || ||||||||||| ||||||||| |||| ||| ||||  ||| |||| ||| |||||||||    
T  28538175 cattgttgacatgcatctagtgttgtccttcccatgctcgttgaagtatgatgagcgtcattccaaatgacatcattacgtgcagcccaaat 28538266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 55734806 - 55734739
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaat 352  Q
    ||||| |||||| |||||||||| ||||||||||||||| |||| ||||||||| |||| ||| ||||    
T  55734806 cattgttgccatacatctagtgttgtcctcccaatgctcattgaagtatgatgagcgtcattctaaat 55734739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 28426258 - 28426196
Alignment:
Q  117 catcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg 179  Q
    ||||||||||||||| ||||  ||||||  |||||| ||||||||||||||| ||||||||||    
T  28426258 catcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaaaacagtcatatttg 28426196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 49119512 - 49119574
Alignment:
Q  117 catcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg 179  Q
    ||||||||||||||| ||||  ||||||  |||||| ||||||||||||||| ||||||||||    
T  49119512 catcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaaaacagtcatatttg 49119574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 29656055 - 29656108
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||||||||||||||||||||| ||||| ||||||||  |||| |||||||||    
T  29656055 cattgctgccatgcatctagtgttgtccttccaatgctttttgaagtatgatga 29656108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 43840453 - 43840553
Alignment:
Q  151 tgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaattg-----gcgagtctctaatacaacacgcaaaagttgta 244  Q
    ||||||||||||||| |||||||||||||| ||||| ||| | |||||| |||| ||||||||     | |||||||||| |||| ||||||||| ||||    
T  43840453 tgtctccccctccaacactgtcatatttgtccgctgccatttcgtttgaccccgaataaattgtccacgggagtctctaacacaaaacgcaaaagatgta 43840552  T
Q  245 a 245  Q
    |    
T  43840553 a 43840553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 49951110 - 49951052
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtc 343  Q
    ||||| |||||||| |||||||| |||||  ||||||||||||| ||||||||| ||||    
T  49951110 cattgttgccatgcttctagtgttgtcctttcaatgctcgttgaagtatgatgagcgtc 49951052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 47226437 - 47226493
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaac 168  Q
    |||||||||||||||||||| ||| | |||||| |||| |  |||||||||||||||    
T  47226437 gttcgcatcagcaaagtgaaaagcctcgagtaagactattacctccccctccaaaac 47226493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 4268175 - 4268040
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg-- 212  Q
    ||||||||||||||||| || |  |||||  |||||| ||||||||||||||||||||||||||  ||||| ||| ||||||||||| | ||||||||      
T  4268175 gcatcagcaaagtgaagggcctctagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccattttgtttgagcctgaataaattgcc 4268076  T
Q  213 ---gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
       | |||||||||| |||||||||||||| |||||    
T  4268075 cacgagagtctctaacacaacacgcaaaagatgtaa 4268040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 15988856 - 15988995
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaat 210  Q
    ||||||||||||||||| ||| || | ||||||   ||||| ||||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||||||    
T  15988856 gttcgcatcagcaaagtaaagggcctcgagtaaggttactgcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaat 15988955  T
Q  211 tg---gcg--agtctctaatacaacacgcaaaagttgtaa 245  Q
    ||   |||  ||||||| | | ||||||||||||||||||    
T  15988956 tgctcgcgaaagtctctgacataacacgcaaaagttgtaa 15988995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 25730888 - 25730788
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaat 210  Q
    ||||||||||||||||||||| || | ||||||  |||||| ||||||||||||||||||||||||||  ||||| ||| | |||||||| || ||||||    
T  25730888 gttcgcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccatttcgtttgagctcgaataaat 25730789  T
Q  211 t 211  Q
    |    
T  25730788 t 25730788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 15989139 - 15989192
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  15989139 cattgttgccatgcatctaatgccgtcctcccaatgctcgttgatgtatgatga 15989192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 27533297 - 27533388
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    ||||| ||||||||||||||||| ||| | |||||||| ||||| |||||||||||||| ||| ||||  ||||||||  || |||||||||    
T  27533297 cattgttgccatgcatctagtgttgtctttccaatgcttgttgaagtatgatgaacgtcattccaaataacataattacatgcagcccaaat 27533388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 245
Target Start/End: Original strand, 11375624 - 11375759
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatattt-gtcgctgtcatcttgtttgagcccgtataaat---- 210  Q
    ||||| ||||| ||||| || | ||||||  ||||||||||||||||||||||||||||||||  |||||| ||| | ||||||| ||| ||||||        
T  11375624 gcatccgcaaaatgaagggcctcgagtaaggctactgtctccccctccaaaactgtcatatttactcgctgccatttcgtttgagtccgaataaatcacc 11375723  T
Q  211 tg-gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
    || | |||||||||| |||||| |||||||||||||    
T  11375724 tgcgagagtctctaacacaacatgcaaaagttgtaa 11375759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 20204752 - 20204694
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtc 343  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| ||||||||| ||||    
T  20204752 cattgttgccatgcatctagtgctgtcctcccaatgctcgttgaagtatgatgagcgtc 20204694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 22767369 - 22767503
Alignment:
Q  117 catcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg--- 212  Q
    ||||||||||||||| ||||  ||||||  |||||| ||||||||||||||| ||||||||||  || || ||| | ||||||||||| ||||||||       
T  22767369 catcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattgccc 22767468  T
Q  213 --gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
      | || ||||||| |||||||||||||| |||||    
T  22767469 ccgggaatctctaacacaacacgcaaaagatgtaa 22767503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 25730638 - 25730585
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    |||||||||||||||| || || |||| ||||||||||||||||||||||||||    
T  25730638 cattgctgccatgcatataatgccgtcttcccaatgctcgttgatgtatgatga 25730585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 8387883 - 8387792
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    |||||||||||||||||||||||  ||||||||||||| ||||| || || ||| |||| ||| ||||  ||| |||| ||| |||||||||    
T  8387883 cattgctgccatgcatctagtgttttcctcccaatgcttgttgaagtgtggtgagcgtcattccaaatgacatcattacgtgcagcccaaat 8387792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 41940843 - 41940909
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatattt 178  Q
    |||| ||| |||||||||||   ||||||||||  ||| ||||||||||||||||||||||||||||    
T  41940843 gttcacatgagcaaagtgaatgacattgagtaaggctattgtctccccctccaaaactgtcatattt 41940909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 4267908 - 4267855
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||||||||||||||||||||  |||||||||||| ||||||| || ||||||    
T  4267908 cattgctgccatgcatctagtgctgtcctcccaatgttcgttgaagtgtgatga 4267855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 27292509 - 27292413
Alignment:
Q  117 catcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaattg 212  Q
    |||||||||||||||| ||||  |||||  ||| || |||||||| ||||||  | |||||||| ||||| ||| ||||||||||||| ||||||||    
T  27292509 catcagcaaagtgaagggcatctagtaaggctattgcctcccccttcaaaacaataatatttgtccgctgccattttgtttgagcccgaataaattg 27292413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 12660396 - 12660257
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaat 210  Q
    |||| ||| |||||||||||   ||| |||||| ||||||| ||||| ||| || |||||||||||||  ||||| ||| | ||||||||||| ||||||    
T  12660396 gttcacattagcaaagtgaatgacatcgagtaagactactgcctcccgctctaacactgtcatatttgcccgctgccatttcgtttgagcccgaataaat 12660297  T
Q  211 tg-----gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
    ||     |  ||||||||| |||||||||||||| |||||    
T  12660296 tgtccatgaaagtctctaacacaacacgcaaaagatgtaa 12660257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 8388156 - 8388098
Alignment:
Q  122 gcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgt 180  Q
    ||||||||||  |||| ||||||  | |||| |||||||||||||||||||||||||||    
T  8388156 gcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttgt 8388098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 88356 - 88265
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    ||||| || |||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||| | || |||| ||| |||||||||    
T  88356 cattgttgtcatgcatctagtgtcgtcctcccaatgctcgttgatctatgatgagcgtcattccaaatggtatcattacgtgcagcccaaat 88265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 12130749 - 12130842
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataa 208  Q
    |||||||||||||||||||| |  |||||  |||||| |||||||||||| ||| ||||||||| |||||||||| | ||||||||||| ||||    
T  12130749 gcatcagcaaagtgaagagcctcaagtaaggctactgcctccccctccaacactatcatatttgctcgctgtcatttcgtttgagcccgaataa 12130842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 34696016 - 34696148
Alignment:
Q  117 catcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg--- 212  Q
    |||||||||||||||  || ||||||||  |||||| ||||||||||||||||||||||||||  ||||| ||||  | ||||||||| ||||||||       
T  34696016 catcagcaaagtgaatggccttgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccatc--gattgagcccgaataaattgccc 34696113  T
Q  213 --gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
      | ||||||||||  ||||||||||||| |||||    
T  34696114 acgggagtctctaacgcaacacgcaaaagatgtaa 34696148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 34696292 - 34696359
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaat 352  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||| ||||    
T  34696292 cattgttgccatgcatctagtgttgtccttccaatgcttgttgaagtatgatgaacgtcattccaaat 34696359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 34718428 - 34718560
Alignment:
Q  117 catcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg--- 212  Q
    |||||||||||||||  || ||||||||  |||||| ||||||||||||||||||||||||||  ||||| ||||  | ||||||||| ||||||||       
T  34718428 catcagcaaagtgaatggccttgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccatc--gattgagcccgaataaattgccc 34718525  T
Q  213 --gcgagtctctaatacaacacgcaaaagttgtaa 245  Q
      | ||||||||||  ||||||||||||| |||||    
T  34718526 acgggagtctctaacgcaacacgcaaaagatgtaa 34718560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 34718704 - 34718771
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaat 352  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||| ||||    
T  34718704 cattgttgccatgcatctagtgttgtccttccaatgcttgttgaagtatgatgaacgtcattccaaat 34718771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 44017464 - 44017564
Alignment:
Q  151 tgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg-----gcgagtctctaatacaacacgcaaaagttgta 244  Q
    |||||||||||||||||||||||||||||  || |||||| || |||||||||| ||||||||     | |||||||||| ||||||||| |||| ||||    
T  44017464 tgtctccccctccaaaactgtcatatttgcacggtgtcattttatttgagcccgaataaattgcccacgggagtctctaacacaacacgcgaaagatgta 44017563  T
Q  245 a 245  Q
    |    
T  44017564 a 44017564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 88635 - 88572
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg 179  Q
    |||||| |||||||||| || | ||||||  |||||| ||||||||||||||||||||||||||    
T  88635 gcatcaacaaagtgaagggcctcgagtaaggctactgcctccccctccaaaactgtcatatttg 88572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 18345864 - 18345955
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaattgcataattatgtgtagcccaaat 376  Q
    |||| ||||||||||| |||||| |||||| ||||||||||||| || |||||||| || ||| ||||  ||| |||| ||| |||||||||    
T  18345864 cattactgccatgcatttagtgttgtcctcgcaatgctcgttgaagtgtgatgaacatcattccaaatgacatcattacgtgcagcccaaat 18345955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 18345598 - 18345662
Alignment:
Q  116 gcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgtc 181  Q
    ||||||||||||||||| || | ||||||  |||||| |||||||| |||||||||||||||||||    
T  18345598 gcatcagcaaagtgaagggcctcgagtaaggctactgcctccccct-caaaactgtcatatttgtc 18345662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 9709999 - 9709941
Alignment:
Q  122 gcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttgt 180  Q
    ||||||||||  |||| ||||||  | |||| |||||||||||||||||||||||||||    
T  9709999 gcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttgt 9709941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 29201104 - 29201197
Alignment:
Q  154 ctccccctccaaaactgtcatatttgt-cgctgtcatcttgtttgagcccgtataaattggc-------gagtctctaatacaacacgcaaaag 239  Q
    ||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| ||||       ||||||||||||||||| |||||||    
T  29201104 ctccccctccaaaactgtcatatttgtccgctgtcatttcgtttgagcccgaataaactggccacacatgagtctctaatacaacatgcaaaag 29201197  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 17877214 - 17877161
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| |||||||||    
T  17877214 cattgttgccatgcatctagtgctgtcctcccaatgctcgttgaagtatgatga 17877161  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 22289038 - 22288985
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatga 338  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| || ||||||    
T  22289038 cattgctgccatgcatctagtgttgtcctcccaatgcttgttgaagtgtgatga 22288985  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 1581412 - 1581345
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaat 352  Q
    ||||| ||||| |||||||||||||| ||| ||||||||||||| ||||||||| |||| ||| ||||    
T  1581412 cattgttgccaagcatctagtgtcgttctcgcaatgctcgttgaagtatgatgagcgtcattccaaat 1581345  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 16731730 - 16731663
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaat 352  Q
    ||||| |||||||| |||||||| |||||||||||||||||||| ||| ||||| |||| ||| ||||    
T  16731730 cattgttgccatgcttctagtgttgtcctcccaatgctcgttgaagtacgatgagcgtcattccaaat 16731663  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 17709864 - 17709797
Alignment:
Q  285 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcgttcgaaat 352  Q
    ||||| |||||||| |||||||| |||||||||||||||||||| ||| ||||| |||| ||| ||||    
T  17709864 cattgttgccatgcttctagtgttgtcctcccaatgctcgttgaagtacgatgagcgtcattccaaat 17709797  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 9328714 - 9328775
Alignment:
Q  117 catcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatattt 178  Q
    ||||||||||||||| ||||  ||||||  |||||| ||||||||||||||| |||||||||    
T  9328714 catcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaaaacagtcatattt 9328775  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 16732013 - 16731912
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaat 210  Q
    ||||||||||||| ||||||  || | ||||||  |||||| |||||||||||| |||||||||||||  | ||| ||| | ||||||||||| ||||||    
T  16732013 gttcgcatcagcagagtgaatggcctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaat 16731914  T
Q  211 tg 212  Q
    ||    
T  16731913 tg 16731912  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 17710147 - 17710046
Alignment:
Q  112 gttcgcatcagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaat 210  Q
    ||||||||||||| ||||||  || | ||||||  |||||| |||||||||||| |||||||||||||  | ||| ||| | ||||||||||| ||||||    
T  17710147 gttcgcatcagcagagtgaatggcctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaat 17710048  T
Q  211 tg 212  Q
    ||    
T  17710047 tg 17710046  T

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Target: scaffold0446 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 258 - 165
Alignment:
Q  120 cagcaaagtgaagagcattgagtaaaactactgtctccccctccaaaactgtcatatttg-tcgctgtcatcttgtttgagcccgtataaattg 212  Q
    ||||||||||||  |||| ||||||  | |||| |||||||||| ||||||||||||||| ||| |||||| | ||||||||||| || |||||    
T  258 cagcaaagtgaatggcatcgagtaaggcaactgcctccccctcccaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattg 165  T

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