View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_13 (Length: 399)
Name: NF5951_low_13
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 39227421 - 39227809
Alignment:
| Q |
11 |
agaacctgtgaagttgttttgccaaagctttaacacttccaaatttggtaactcagnnnnnnnngatggaatttcaccatagagtttgttgatgaacaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39227421 |
agaacctgtgaagttgttttgccaaagctttaacacttccaaatttggtaactcagaaaaaaaagatggaatttcaccatagagtttgttgatgaacaag |
39227520 |
T |
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| Q |
111 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227521 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
39227620 |
T |
|
| Q |
211 |
ctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227621 |
ctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaa |
39227720 |
T |
|
| Q |
311 |
accacagtttgcaagatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataaccta |
399 |
Q |
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| T |
39227721 |
accacagtttgcaagatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataaccta |
39227809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 25546622 - 25547008
Alignment:
| Q |
11 |
agaacctgtgaagttgttttgccaaagctttaacacttccaaatttggtaactcagnnnnnnnngatggaatttcaccatagagtttgttgatgaacaag |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
25546622 |
agaacctgtgaagttgttatgccaaagctttaacacttccaaatttggtaactcagaaaaaaaagatggaatttcacca--gagtttgttgatgaacaag |
25546719 |
T |
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| Q |
111 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546720 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
25546819 |
T |
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| Q |
211 |
ctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25546820 |
ctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcgtagctcatgtggaattgaacctttcaa |
25546919 |
T |
|
| Q |
311 |
accacagtttgcaagatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataaccta |
399 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546920 |
accacagtttgcaagatcaagatgaagtaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataaccta |
25547008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 16733618 - 16733490
Alignment:
| Q |
182 |
atcaagagatttcaaactactaagattccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagtttt |
281 |
Q |
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|||||||| ||||| ||||| | ||| ||||||| ||||||||| ||||| | |||||||| |||||||||||||||| ||||| |||| ||||| |
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| T |
16733618 |
atcaagagcattcaatctactcaaattacctaattcaggtggaataaaaccagtgagttgatttttttgcaagaaaagtgtatctagcttgttaagttga |
16733519 |
T |
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| Q |
282 |
cctagctcatgtggaattgaacctttcaa |
310 |
Q |
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|||| |||| ||||||||||||||||||| |
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| T |
16733518 |
cctaactcaagtggaattgaacctttcaa |
16733490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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