View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_15 (Length: 371)
Name: NF5951_low_15
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 39228126 - 39227786
Alignment:
| Q |
18 |
aaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228126 |
aaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgat |
39228027 |
T |
|
| Q |
118 |
gcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228026 |
gcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaa |
39227927 |
T |
|
| Q |
218 |
ttccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227926 |
ttccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaa |
39227827 |
T |
|
| Q |
318 |
tcttacacaccttttgttaggttattacaatgagtttgatg |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227826 |
tcttacacaccttttgttaggttattacaatgagtttgatg |
39227786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 25547325 - 25546985
Alignment:
| Q |
18 |
aaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547325 |
aaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgat |
25547226 |
T |
|
| Q |
118 |
gcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaa |
217 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547225 |
gcttacaacaatgagttcaattgttcactacctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaa |
25547126 |
T |
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| Q |
218 |
ttccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547125 |
ttccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaa |
25547026 |
T |
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| Q |
318 |
tcttacacaccttttgttaggttattacaatgagtttgatg |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547025 |
tcttacacaccttttgttaggttattacaatgagtttgatg |
25546985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 16733310 - 16733375
Alignment:
| Q |
244 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
309 |
Q |
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|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
16733310 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
16733375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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