View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_2 (Length: 782)
Name: NF5951_low_2
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 7 - 772
Target Start/End: Original strand, 3705781 - 3706546
Alignment:
| Q |
7 |
aaacatgtgcgcaagtgcaatggggaatgatcgacgatatannnnnnnnaaagcaataaggaaaaaagttgtacctgcacatcttgagcattaacatcaa |
106 |
Q |
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| T |
3705781 |
aaacatgtgcgcaagtgcaatggggaatgatcgacgatatattttttttaaagcaataaggaaaaaagttgtacctgcacatcttgagcattaacatcaa |
3705880 |
T |
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| Q |
107 |
gatgatcagcaataaggaaacggaagcgagaggaatccaaattagtgcctgaaccaatgacgcggttggaggggaaaccagaaagtttccaagcaatgta |
206 |
Q |
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| T |
3705881 |
gatgatcagcaataaggaaacggaagcgagaggaatccaaattagtgcctgaaccaatgacgcggttggaggggaaaccagaaagtttccaagcaatgta |
3705980 |
T |
|
| Q |
207 |
agtgagcacatcaacaggattggaaacaattagaagaacacaatggggagagtaacgaaccaaaggcggtataannnnnnnaaacaaagctacattcctt |
306 |
Q |
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| T |
3705981 |
agtgagcacatcaacaggattggaaacaattagaagaacacaatgaggagagtaacgaaccaaaggcggtataatttttttaaacaaagctacattcctt |
3706080 |
T |
|
| Q |
307 |
tgtagcaaattcaatctggactcgccattaatctggcgagccccagcagtgacgatgcagaggtcagaccccatcgtcactgaatagtcagtggaggcct |
406 |
Q |
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| T |
3706081 |
tgtagcaaattcaatctggactcgccattaatctgacgagccccagcagtgacgatgcagaggtcggaacccatcgtcactgaatagtcagtggaggcct |
3706180 |
T |
|
| Q |
407 |
ggatcttagtacgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgac |
506 |
Q |
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| T |
3706181 |
ggatcttagtgcgggggaggaaggccgcagcatgttgtagatccagcatctcacctcgtagtttgtcaggaatggcgtcaacaagaacaagctcgtcgac |
3706280 |
T |
|
| Q |
507 |
taggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgtttggttggagaaggaggtgag |
606 |
Q |
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| T |
3706281 |
taggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgtttggttggagaaggaggtgag |
3706380 |
T |
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| Q |
607 |
gcatgttggatggacttgaagaaggattgagttaggtccaaaccacctggtcccaatgatgaacctgatatgcttttgtgcatttggatttgcttgtgct |
706 |
Q |
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| T |
3706381 |
gcatgttggatggacttgaagaaggattgagttaggtccaaaccatctggtcccaatgatgaacctgatatgcttttgtgcattttgatttgcttgtgct |
3706480 |
T |
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| Q |
707 |
gatttgagtaaaggtaaatgcgaagtgtgtgatgggaaaatttgatttgtttgtttatgtgatgat |
772 |
Q |
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| T |
3706481 |
gatttgagtaaaggtaaatgtgaagtgtgtgatgggaaaatttgatttgtttttttatgtgatgat |
3706546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 418 - 581
Target Start/End: Complemental strand, 41765310 - 41765147
Alignment:
| Q |
418 |
cgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgactaggtcttgtg |
517 |
Q |
| |
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||||||||||| || ||||| ||||| ||||| ||||| || || || |||||||| || || |||| || | || |||||||| |||||||| | |
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| T |
41765310 |
cgggggaggaaagcagcagcgtgttgaagatcaagcatttcgccgcggagtttgtcgggtttgttgtcgacgatgacgagctcgtctgtgaggtcttgag |
41765211 |
T |
|
| Q |
518 |
ttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtg |
581 |
Q |
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| T |
41765210 |
ttaggatggtctgagcaatggccatgccgacgttgccggcgccgatgacggagatcttgttgtg |
41765147 |
T |
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