View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_20 (Length: 318)
Name: NF5951_low_20
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_20 |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 48096477 - 48096286
Alignment:
| Q |
114 |
ctccagctggatggatactccattactattgctaatgctaaatgagtagtggtcaaaacccccattgaagtaacagttaacaactcataatcaattaaca |
213 |
Q |
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| T |
48096477 |
ctccagctggatggatactccattactattgctaa------atgagtagtggtcaaaacccc-attgaagtaacagttaacaactcataatcaattaaca |
48096385 |
T |
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| Q |
214 |
atgtaattattaattgattatggtaaatgagtagatgaaattatatatattcgggtcccgaagagacctgtggttgataatctctttagccacattctca |
313 |
Q |
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| T |
48096384 |
atgtactcaatacaaacctatccaaca------gatgaaattatatatattcgggtcccgaagagacctgtggttgataatctctttagccacattctca |
48096291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 92
Target Start/End: Complemental strand, 48096513 - 48096483
Alignment:
| Q |
62 |
gctgaaccgaccagcattacagatcctctct |
92 |
Q |
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| T |
48096513 |
gctgaaccgaccagcattacagatcctctct |
48096483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 39883164 - 39883223
Alignment:
| Q |
259 |
tatattcgggtcccgaagagacctgtggttgataatctctttagccacattctcatcaat |
318 |
Q |
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| T |
39883164 |
tatatttgggtgccgaagagacctgtggttgataatctctctagccacattctcatcaat |
39883223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 39882940 - 39882982
Alignment:
| Q |
49 |
taacctcatctttgctgaaccgaccagcattacagatcctctc |
91 |
Q |
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| T |
39882940 |
taacctcatcttcgctgaaccgaccagcattacagatcctctc |
39882982 |
T |
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