View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5951_low_24 (Length: 295)

Name: NF5951_low_24
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5951_low_24
NF5951_low_24
[»] chr3 (13 HSPs)
chr3 (1-278)||(38028859-38029136)
chr3 (1-278)||(38040174-38040451)
chr3 (1-278)||(38033872-38034150)
chr3 (1-272)||(38036892-38037164)
chr3 (1-278)||(50909729-50910007)
chr3 (6-278)||(38024968-38025240)
chr3 (8-270)||(55084562-55084825)
chr3 (29-278)||(38031420-38031668)
chr3 (129-270)||(38043798-38043942)
chr3 (103-278)||(50911962-50912137)
chr3 (129-269)||(50904894-50905037)
chr3 (164-272)||(48840810-48840917)
chr3 (215-256)||(50913480-50913521)
[»] chr8 (2 HSPs)
chr8 (1-278)||(21604847-21605127)
chr8 (8-278)||(21607389-21607658)
[»] chr4 (11 HSPs)
chr4 (139-278)||(17970204-17970346)
chr4 (210-270)||(27444895-27444955)
chr4 (212-246)||(27563471-27563505)
chr4 (215-264)||(27523510-27523559)
chr4 (212-264)||(27505809-27505861)
chr4 (212-272)||(27566050-27566110)
chr4 (215-270)||(27469444-27469499)
chr4 (215-270)||(27486967-27487022)
chr4 (215-270)||(27500439-27500494)
chr4 (197-264)||(27554275-27554342)
chr4 (197-272)||(27415590-27415662)
[»] chr2 (1 HSPs)
chr2 (139-278)||(3073474-3073616)
[»] chr5 (1 HSPs)
chr5 (210-270)||(1756858-1756918)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 38029136 - 38028859
Alignment:
Q  1 caaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38029136 caaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacacttatctt 38029037  T
Q  101 atatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaa 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38029036 atatctgagaaattcatcttgttcttcaaaacatttgaaatgggtttccgtttacctgcagctattagacgggcttcattcagcagtagccaaacatcaa 38028937  T
Q  201 aagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028936 aagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 38028859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 38040451 - 38040174
Alignment:
Q  1 caaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatctt 100  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  38040451 caaagggatttcaagaaactcttgtaaactataaatatagtgtcctccttcacaacaatcacaaatcactcaaacaatcaaacttatatacatttatctt 38040352  T
Q  101 atatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaa 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38040351 acatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaa 38040252  T
Q  201 aagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38040251 aagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 38040174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 38034150 - 38033872
Alignment:
Q  1 caaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatctt 100  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  38034150 caaagggatttcaacaaactcttggaaactataaatatagggtcctccttcacaacaatcacaaatcactcaagcaatcaaacttatatacacttatctt 38034051  T
Q  101 atatctgagaaattcatcttgttcatcaaaacat-ttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca 199  Q
    | ||||||||||||| |||||||| |||||| |  ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  38034050 acatctgagaaattcgtcttgttcttcaaaaaaaattgaaatgggtttccgtttacctgcagctattagacgggcttcattcagcagtagtcaaacatca 38033951  T
Q  200 aaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  38033950 aaagcattgaatgtgccaaagggctatcttgcagtgtacattggagagcaaatgaagcggtttgttatccccacgtcat 38033872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 38037164 - 38036892
Alignment:
Q  1 caaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatctt 100  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  38037164 caaagggatttcaaaaaactcttggaaactataaatataatgtcctccttcacaacaatcacaaatcactcaagcaaacaaacttatatacatttatctt 38037065  T
Q  101 atatctgagaaattcatcttgttcatcaaaacatt-tgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca 199  Q
    | || ||||||||||||||||||| |||||| |   |||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||     
T  38037064 acatttgagaaattcatcttgttcttcaaaaaaaactgaaatgggtttccgtttacctgcagctattagacgggcttcctttagcagtagccaaacatcc 38036965  T
Q  200 aaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatcccca 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  38036964 aaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtcccca 38036892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 50909729 - 50910007
Alignment:
Q  1 caaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatctt 100  Q
    |||||||||||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| |||  |||| ||||||||    
T  50909729 caaagggatttcaagaaactcttagaaactataaatattgtgtcctcattcacaacactcacaaatcactcaagcaatcaaacttggatacttttatctt 50909828  T
Q  101 atatctgagaaattcatcttgtt-catcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca 199  Q
    | |||||||||||||||||| || | |||||||||||||||||||||| |||||| | |||||||||||||| |||||||| ||||||||||||||||||    
T  50909829 acatctgagaaattcatcttatttcttcaaaacatttgaaatgggtttccgtttaccagcagctattagacgagcttcatttagcagtagccaaacatca 50909928  T
Q  200 aaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||| ||||||||||||| |||||    
T  50909929 aaagtattgaatgtgccaaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcat 50910007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 38025240 - 38024968
Alignment:
Q  6 ggatttcaaa-aaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatat 104  Q
    |||||||||| ||||||||| || ||||||||||| | |||||| || ||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||    
T  38025240 ggatttcaaagaaactcttgaaatctataaatacattatcctccatcgcaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaat 38025142  T
Q  105 ctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aa 201  Q
    ||||||||||||  || ||| |||||||||||||||||||||| |||||| ||||   |||||||||  ||||||| |  ||||||||| |||||   ||    
T  38025141 ctgagaaattcagttttttcttcaaaacatttgaaatgggtttccgtttacctgc---tattagacgaacttcatttacaagtagccaagcatcatcaaa 38025045  T
Q  202 agtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    ||   ||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| |||||    
T  38025044 agctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcat 38024968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 55084562 - 55084825
Alignment:
Q  8 atttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctg 107  Q
    ||||||| ||||||||| |||||||||||||| ||||||| ||||||||  |||||||| ||||| |||| |||  ||  |||| ||| ||||| |||||    
T  55084562 atttcaataaactcttgaaaactataaatacattgtcctctttcacaac-ttcacaaattactcaggcaaacaaatttagatacctttttcttaaatctg 55084660  T
Q  108 agaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca--aaagta 205  Q
    | ||||||| ||||||  |||||||||||||||| ||||| |||||| |||||||||||||| || ||||||| |   ||||||||||||||  ||| |     
T  55084661 ataaattcagcttgttattcaaaacatttgaaat-ggtttccgtttacctgcagctattagaaggacttcatttacgggtagccaaacatcatcaaaatc 55084759  T
Q  206 t-tgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccc 270  Q
    | ||||||||||||| || | |||||||||||| ||||||||| |||||||||| ||||| |||||    
T  55084760 tgtgaatgtgccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccc 55084825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 278
Target Start/End: Complemental strand, 38031668 - 38031420
Alignment:
Q  29 ctataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatca 128  Q
    ||||||||||| |||||| |||||||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||| ||||||||||  || |||||||    
T  38031668 ctataaatacactgtccttcttcacaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatcagagaaattcagttttttcatca 38031570  T
Q  129 aaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggcta 225  Q
    ||||||||||||||||||| | |||| ||||   |||||||||  ||||||| |  ||||||||| |||||   ||||   ||||||| |||||||||||    
T  38031569 aaacatttgaaatgggtttccatttacctgc---tattagacgaacttcatttacaagtagccaagcatcatcaaaagctgtgaatgtaccaaagggcta 38031473  T
Q  226 tcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||| |||||    
T  38031472 tcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcat 38031420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 270
Target Start/End: Original strand, 38043798 - 38043942
Alignment:
Q  129 aaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggcta 225  Q
    |||||||| ||||||| || | |||| ||||||||||   | |||||||||| || || ||||||||||||   |||||    |||||||||||| ||||    
T  38043798 aaacatttaaaatgggcttccatttacctgcagctatagtaagggcttcatttagaagcagccaaacatcattgaaagtcacaaatgtgccaaagagcta 38043897  T
Q  226 tcttgcagtgtacgttggagagcaaatgaagcgatttgttatccc 270  Q
    ||||||||||||| |||||||| |||||||||| ||||| |||||    
T  38043898 tcttgcagtgtactttggagaggaaatgaagcggtttgtgatccc 38043942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 278
Target Start/End: Complemental strand, 50912137 - 50911962
Alignment:
Q  103 atctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca--- 199  Q
    ||||||||||||||  || ||| |||||| ||||||||||||||| |||||| ||||    ||||||||  ||||||| |   |||||||| |||||       
T  50912137 atctgagaaattcagttttttcttcaaaatatttgaaatgggtttccgtttacctgcc---attagacgaacttcatttacaggtagccaagcatcatca 50912041  T
Q  200 aaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    |||||  ||||||||||||||||||||||||| || || ||||||||  | ||||| || ||||| ||||||| |||||    
T  50912040 aaagttgtgaatgtgccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcat 50911962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 50905037 - 50904894
Alignment:
Q  129 aaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattga---atgtgccaaagggcta 225  Q
    |||||||| ||||||| ||  ||||| | |||||||| ||| ||||||| || || ||||||||| |||||| |  |  ||   ||||||||||||| ||    
T  50905037 aaacatttaaaatgggcttctgtttaccagcagctataagaagggcttcctttagtagtagccaagcatcaacaaaagcgacaaatgtgccaaagggata 50904938  T
Q  226 tcttgcagtgtacgttggagagcaaatgaagcgatttgttatcc 269  Q
    |||||||||||||||||||||  |||||||||| ||||| ||||    
T  50904937 tcttgcagtgtacgttggagaagaaatgaagcggtttgtgatcc 50904894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 48840917 - 48840810
Alignment:
Q  164 attagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttg 263  Q
    |||||||||| |||||| |||||||  ||  |||||||||||    ||||||||||||| ||||||||| ||||||| |||||| | |||||||||||||    
T  48840917 attagacgggtttcatttagcagtaaacat-catcaaaagtagcagatgtgccaaagggatatcttgcattgtacgtcggagaggagatgaagcgatttg 48840819  T
Q  264 ttatcccca 272  Q
    | |||||||    
T  48840818 taatcccca 48840810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 50913480 - 50913521
Alignment:
Q  215 ccaaagggctatcttgcagtgtacgttggagagcaaatgaag 256  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||    
T  50913480 ccaaaaggctatcttgcagtgtatgttggagagaaaatgaag 50913521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 21605127 - 21604847
Alignment:
Q  1 caaagggatttcaaaaaactcttggaaactataaatacagtgtcctcct---tcacaacaatcacaaatcactcaagcaatcaatcttttatacatttat 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||    
T  21605127 caaagggatttcaaaaaactcttggaaactataaatacagtgtcctcctccttcacaacaatcacaaatcactcaagcaatcgatcttttatacatttat 21605028  T
Q  98 cttatatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacat 197  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21605027 cttatatctgagaaattcatcttgttcttcaaaacatttgaaatgggtttccgtttacctgcagctattagacgggcttcattcagcagtagccaaacat 21604928  T
Q  198 caaaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  21604927 caaaagtattgaatgtgccaaagggctatcttgcagtgtaagtaggagagcaaatgaagcgatttgttatccccacgtcat 21604847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 21607658 - 21607389
Alignment:
Q  8 atttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctg 107  Q
    ||||||||| |  |||| || ||||||||||| ||||||||||||||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||| |    
T  21607658 atttcaaaagatacttgaaatctataaatacactgtcctccttcacaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatcag 21607560  T
Q  108 agaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagt 204  Q
    |||||||||  || ||| |||||||||||||||||||||| |||||| ||||   |||||||||  ||||||| |  ||||||||| |||||   |||||    
T  21607559 agaaattcagttttttcttcaaaacatttgaaatgggtttccgtttacctgc---tattagacgaacttcatttacaagtagccaagcatcatcaaaagt 21607463  T
Q  205 attgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
      ||||||| |||||||| |||||||| || || |||||||||||||||||||| ||||||||||||| |||||    
T  21607462 tgtgaatgtaccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcat 21607389  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 17970204 - 17970346
Alignment:
Q  139 aatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggctatcttgcagtg 235  Q
    |||||| || |||||| |||||||||| ||| |||   |||| ||||| |||||||| |||   ||||||   |||||||||||||| |||||||| |||    
T  17970204 aatgggcttccgtttacctgcagctataagaagggtgacatttagcagcagccaaacgtcattgaaagtagcaaatgtgccaaagggatatcttgcggtg 17970303  T
Q  236 tacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    |||||||||||| |||||||||| ||||| ||||| |||||||    
T  17970304 tacgttggagaggaaatgaagcggtttgtgatccctacgtcat 17970346  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 27444955 - 27444895
Alignment:
Q  210 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccc 270  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||| | ||||| |||||    
T  27444955 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatccc 27444895  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 246
Target Start/End: Complemental strand, 27563505 - 27563471
Alignment:
Q  212 gtgccaaagggctatcttgcagtgtacgttggaga 246  Q
    |||||||||||||||||||||||||||||||||||    
T  27563505 gtgccaaagggctatcttgcagtgtacgttggaga 27563471  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 27523559 - 27523510
Alignment:
Q  215 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 264  Q
    |||||||||||||| ||||||||||| |||||| |||||||||| |||||    
T  27523559 ccaaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgt 27523510  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 27505861 - 27505809
Alignment:
Q  212 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 264  Q
    ||||||||||| ||||| ||||||||||| |||||| |||||||||| |||||    
T  27505861 gtgccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgt 27505809  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 27566110 - 27566050
Alignment:
Q  212 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatcccca 272  Q
    ||||||||||| |||||||||||||| ||||||||| ||   ||||||||||| |||||||    
T  27566110 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatcccca 27566050  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 27469444 - 27469499
Alignment:
Q  215 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccc 270  Q
    |||||||| ||||| ||||||||||| |||||| |||||||||| ||||| |||||    
T  27469444 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccc 27469499  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 27486967 - 27487022
Alignment:
Q  215 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccc 270  Q
    |||||||| ||||| ||||||||||| |||||| |||||||||| ||||| |||||    
T  27486967 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccc 27487022  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 27500494 - 27500439
Alignment:
Q  215 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccc 270  Q
    ||||| || ||||| ||||||||||| |||||| |||||||||||||||| |||||    
T  27500494 ccaaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccc 27500439  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 27554275 - 27554342
Alignment:
Q  197 tcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 264  Q
    ||||||| | || ||||||||||||| || |||||||| || ||||||||| |||||||||| |||||    
T  27554275 tcaaaaggagtggatgtgccaaagggataccttgcagtatatgttggagaggaaatgaagcggtttgt 27554342  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 27415590 - 27415662
Alignment:
Q  197 tcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatcccca 272  Q
    ||||||||  || ||||||||||||| |||||||||||||| |||||| | |||   ||||||||||| |||||||    
T  27415590 tcaaaagttgtggatgtgccaaagggatatcttgcagtgtatgttggaaaacaa---aagcgatttgtgatcccca 27415662  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 3073474 - 3073616
Alignment:
Q  139 aatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggctatcttgcagtg 235  Q
    |||||| || |||||| |||||||||| ||| |||   |||| ||||| |||||||| |||   ||||||   |||||||||||||| |||||||| |||    
T  3073474 aatgggcttccgtttacctgcagctataagaagggtgacatttagcagcagccaaacgtcattgaaagtagcaaatgtgccaaagggatatcttgcggtg 3073573  T
Q  236 tacgttggagagcaaatgaagcgatttgttatccccacgtcat 278  Q
    |||||||||||| |||||||||| ||||| ||||| |||||||    
T  3073574 tacgttggagaggaaatgaagcggtttgtgatccctacgtcat 3073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 1756918 - 1756858
Alignment:
Q  210 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccc 270  Q
    |||| ||||||||||||||||||||| | ||||||||| ||  |||||| ||||| |||||    
T  1756918 atgtaccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatccc 1756858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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