View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_25 (Length: 292)
Name: NF5951_low_25
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 3568979 - 3568702
Alignment:
| Q |
15 |
acctgtgttactataatgaactatatcatctgccaaaaaatcaggttgaaccgcaagcatgctactatcttcagacatgacggtacctgaattaccaaca |
114 |
Q |
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| T |
3568979 |
acctgtgttactattatgaactatatcatctgccaaaaaaccaggttgaaccgcaagcatgctactatcttcagacatgacggtacctgaattaccaaca |
3568880 |
T |
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| Q |
115 |
agttccatgtcatgttggatgttaggatgtatatccttgttagaaccaatctcatgaatgttactgttgcttaaagatttgccatagagatatctgaatg |
214 |
Q |
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| T |
3568879 |
agttccatgtcatgttggatgttaggatatatatccttgttagaaccaatctcatgaatgttactgttgcttaaagatttgccatagagatatctgaatg |
3568780 |
T |
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| Q |
215 |
ggcagcatcctcacgtgcaaccagctgttgctcctcactgtgcacgccctcataatctaaatgtgctatgttggccga |
292 |
Q |
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| T |
3568779 |
ggcagcatcctcacgtgcaaccagctgttgctcctcactgtgcacgccctcataatccaaatgtgctatgttggccga |
3568702 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 18485357 - 18485273
Alignment:
| Q |
11 |
cagaacctgtgttactataatgaactatatcatctgccaaaaaatcaggttgaaccgcaagcatgctactatcttcagacatgac |
95 |
Q |
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|||||||| |||||| || | |||||| ||||||||||||||| | |||||||| ||||||||||| ||||||||||||| |
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| T |
18485357 |
cagaacctatgttaccattaagaactaccgcatctgccaaaaaattaaactgaaccgcgagcatgctactgccttcagacatgac |
18485273 |
T |
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