View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_27 (Length: 275)
Name: NF5951_low_27
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 15230722 - 15230844
Alignment:
| Q |
143 |
gaaataaattgcagaagaatagcatccaacacacaggctgcaccaatatgctatgttctggtttcgtgcaaactagccaaaaaatttatgttggtgcacc |
242 |
Q |
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| T |
15230722 |
gaaataaattgcagaagaatagcatccaacatacaggctgcaccaatatgctatgttctggtttcgtgcaaactagccaaaaaatttatgttggtgcacc |
15230821 |
T |
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| Q |
243 |
cgtggcgaatgtatcttcctatg |
265 |
Q |
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| T |
15230822 |
cgtggctaatgtatcttcctatg |
15230844 |
T |
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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 15249001 - 15249069
Alignment:
| Q |
175 |
acaggctgcaccaatatgctatgttctggtttcgtgcaaactagccaaaaaatttatgttggtgcaccc |
243 |
Q |
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| T |
15249001 |
acaggctgcaccaattcgctatgtcctggttttgtgcaaactagcacaaaaatttatattggttcaccc |
15249069 |
T |
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