View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_32 (Length: 244)
Name: NF5951_low_32
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 2507515 - 2507366
Alignment:
| Q |
93 |
acctcaacattgttgatagtactataaatcttaagcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacat |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2507515 |
acctcaacattgttgatagtactataaatcttaagcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacat |
2507416 |
T |
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| Q |
193 |
gaggactcttatgagtgacccaaaatcttctatcaatccacgtgcctatg |
242 |
Q |
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| T |
2507415 |
gaggactcttatgagtgacccaaaagcttctatcaatccacgtgcctatg |
2507366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 2514605 - 2514458
Alignment:
| Q |
93 |
acctcaacattgttgatagtactataaatcttaagcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacat |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2514605 |
acctcaacattgttgatagtactataaatcttaagcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttaaat |
2514506 |
T |
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| Q |
193 |
gaggactcttatgagtgacccaaaatcttctatcaatccacgtgccta |
240 |
Q |
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| T |
2514505 |
gaggactcttatgagtgacccaaaagcttctatcaatccacgtgccta |
2514458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 2434453 - 2434555
Alignment:
| Q |
93 |
acctcaacattgttgatagtactataaatcttaagcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacat |
192 |
Q |
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| T |
2434453 |
acctcaacattgttgacagtaccataacactcaagcttccacaaggttccaatgatgtggttttgctcaaaaatctgtacttgtcttgtgatccttacat |
2434552 |
T |
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| Q |
193 |
gag |
195 |
Q |
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||| |
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| T |
2434553 |
gag |
2434555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 2430881 - 2430975
Alignment:
| Q |
101 |
attgttgatagtactataaatcttaagcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacatgag |
195 |
Q |
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||||| || |||||||||| ||| ||||||||| ||||||| |||||| ||| || | |||||||| |||||||||||||||||||||||||| |
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| T |
2430881 |
attgtagacagtactataactctcaagcttccacaaggttcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgag |
2430975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 2519305 - 2519204
Alignment:
| Q |
105 |
ttgatagtactataaatcttaagcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacatgaggactcttat |
204 |
Q |
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|||| ||||| |||| ||| ||||||||| ||| |||||||||| | | || | |||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
2519305 |
ttgacagtaccataactctcaagcttccacaagcttccaatgatgttcttctgctcaaaaatctctacttgtcttgtgatccttacatgaggaatcttat |
2519206 |
T |
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| Q |
205 |
ga |
206 |
Q |
| |
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|| |
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| T |
2519205 |
ga |
2519204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 1457921 - 1458014
Alignment:
| Q |
102 |
ttgttgatagtactataaatcttaagcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacatgag |
195 |
Q |
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||||||||||||| || | ||| || |||||| |||||||||||||| ||| || | |||||||| ||||| || |||||||||||| |||| |
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| T |
1457921 |
ttgttgatagtacaattattctcaaccttccacaaggttccaatgatgttgttctgctaaaaaatctctacttatcctgtgatccttacctgag |
1458014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 2427628 - 2427721
Alignment:
| Q |
102 |
ttgttgatagtactataaatcttaagcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacatgag |
195 |
Q |
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||||||||||||| || | ||| || |||||| |||||||||||||| ||| || | |||||||| ||||| || |||||||||||| |||| |
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| T |
2427628 |
ttgttgatagtacaattattctcaaccttccacaaggttccaatgatgttgttctgctcaaaaatctctacttatcctgtgatccttacctgag |
2427721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 11846008 - 11846044
Alignment:
| Q |
164 |
aatctttacttgtcttgtgatccttacatgaggactc |
200 |
Q |
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| T |
11846008 |
aatctttacttgtcttgtgaaccttacacgaggactc |
11846044 |
T |
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