View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5951_low_38 (Length: 201)
Name: NF5951_low_38
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 16266518 - 16266313
Alignment:
| Q |
1 |
aggatctagttcgacaacaataatatcgtttactcaaacacttttactaattgtagaatttgtgggataattagaaggagtaa----aaatcaatagtta |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| ||| |
|
|
| T |
16266518 |
aggatctagttcgacaacaataatatcgtttactcaaacacttttactaattgtagaattcgtgcaataattagaaggagtaattaaaaatcaataatta |
16266419 |
T |
|
| Q |
97 |
atagtatatatttgggggataatgtgttgatattctaaaataacaaatatttaagacactaataaagttcaaacgtgactcttttt---agatgagtaga |
193 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
16266418 |
atagtatatatttgggggataatgcgttgatattctaaaataacaaatatttaagatactaacaaagttcaaacgtgactctttttatgagacgagtaga |
16266319 |
T |
|
| Q |
194 |
gtattt |
199 |
Q |
| |
|
|||||| |
|
|
| T |
16266318 |
gtattt |
16266313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University