View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_4 (Length: 575)
Name: NF5951_low_4
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 316 - 564
Target Start/End: Complemental strand, 33887260 - 33887006
Alignment:
| Q |
316 |
ttcagggaagaggagattgatgaattctttgcaaattttgagagggaagagcggaagagatttgctgagaagtaagaatataataaaactaccacctgct |
415 |
Q |
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| T |
33887260 |
ttcagggaggcggagattgatgaattctttgcaaattttgagagggaagagcggaagagatttgctgagaagtaagtatataataaaactaccacctgct |
33887161 |
T |
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| Q |
416 |
ataaattattttaacttttattttgaaatgagtgacacaagatacggaatgtgagcagtgatctattccctgtcc------ctgtgcagtggcagaatca |
509 |
Q |
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| T |
33887160 |
ataaattattttaacttttattttgaaatgagtgacacaagataaggaatgtgagcagtgatctattccctgtccctgtccctgtgcagtggcagaatca |
33887061 |
T |
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| Q |
510 |
aaccctaactaactaacaactttgctgcgttgtttgtaggtacaactttgatatt |
564 |
Q |
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| T |
33887060 |
aaccctaactaaccaacaactttactgcgttgtttgtaggtacaactttgatatt |
33887006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 33887442 - 33887347
Alignment:
| Q |
115 |
ctaatatttgtgaattactgtgatgatcttgcagctgaaaactaagtgttttgaaacggtagacaaaaccaaccacaatttaaaatcgttcaggta |
210 |
Q |
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| T |
33887442 |
ctaatatttgtgaattactgtgatgatcttgcagctgaaaactaagtgttttgaaacggtagacaaaacgaaccacaatttaaaatcgttcaggta |
33887347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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