View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5951_low_5 (Length: 560)

Name: NF5951_low_5
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5951_low_5
NF5951_low_5
[»] chr7 (17 HSPs)
chr7 (1-542)||(6431032-6431592)
chr7 (1-542)||(4509244-4509807)
chr7 (1-542)||(4511086-4511649)
chr7 (444-542)||(4512936-4513034)
chr7 (500-542)||(30814344-30814386)
chr7 (340-416)||(44011265-44011341)
chr7 (60-154)||(6048210-6048307)
chr7 (393-443)||(4513054-4513104)
chr7 (345-393)||(26214625-26214673)
chr7 (337-393)||(38395931-38395986)
chr7 (488-526)||(2761647-2761685)
chr7 (488-526)||(14070178-14070216)
chr7 (488-526)||(14380206-14380244)
chr7 (54-178)||(20298846-20298972)
chr7 (339-393)||(48491124-48491178)
chr7 (109-178)||(20298999-20299068)
chr7 (510-542)||(34311264-34311296)
[»] chr1 (23 HSPs)
chr1 (1-452)||(19753570-19754023)
chr1 (54-458)||(13547793-13548200)
chr1 (1-397)||(31928443-31928841)
chr1 (54-365)||(41141256-41141572)
chr1 (437-542)||(19752202-19752307)
chr1 (325-413)||(50167718-50167806)
chr1 (331-418)||(776784-776871)
chr1 (54-178)||(13126178-13126303)
chr1 (444-498)||(19754034-19754088)
chr1 (485-539)||(31928351-31928405)
chr1 (394-443)||(19752140-19752189)
chr1 (54-154)||(13126107-13126208)
chr1 (54-141)||(28842021-28842110)
chr1 (94-154)||(10742247-10742307)
chr1 (483-526)||(28220571-28220614)
chr1 (508-542)||(19754078-19754112)
chr1 (488-526)||(30476793-30476831)
chr1 (335-401)||(41360468-41360533)
chr1 (504-542)||(42298522-42298560)
chr1 (58-154)||(155220-155317)
chr1 (54-141)||(47179026-47179115)
chr1 (485-526)||(49918131-49918172)
chr1 (338-402)||(47102277-47102341)
[»] chr8 (15 HSPs)
chr8 (1-416)||(40220186-40220604)
chr8 (1-393)||(42435799-42436194)
chr8 (94-398)||(20686787-20687094)
chr8 (425-542)||(44353295-44353416)
chr8 (54-153)||(29796976-29797075)
chr8 (331-417)||(10014676-10014762)
chr8 (54-153)||(17849319-17849419)
chr8 (345-401)||(15949126-15949182)
chr8 (58-154)||(31574360-31574460)
chr8 (335-401)||(19492248-19492313)
chr8 (335-401)||(26268777-26268843)
chr8 (488-526)||(43036208-43036246)
chr8 (54-141)||(15072291-15072380)
chr8 (340-397)||(26402624-26402681)
chr8 (333-393)||(34254899-34254959)
[»] chr3 (19 HSPs)
chr3 (1-393)||(43402599-43402993)
chr3 (54-399)||(1686189-1686541)
chr3 (483-542)||(30235686-30235745)
chr3 (338-398)||(4386445-4386505)
chr3 (392-431)||(34490591-34490630)
chr3 (79-132)||(15824297-15824350)
chr3 (80-159)||(2075684-2075763)
chr3 (54-178)||(28100682-28100808)
chr3 (488-526)||(29810653-29810691)
chr3 (331-393)||(44331085-44331147)
chr3 (54-141)||(457549-457638)
chr3 (54-141)||(3316043-3316132)
chr3 (485-526)||(30709464-30709505)
chr3 (333-393)||(5258716-5258776)
chr3 (333-389)||(7763970-7764026)
chr3 (333-393)||(9634891-9634951)
chr3 (60-154)||(27422331-27422429)
chr3 (332-408)||(37407974-37408050)
chr3 (485-521)||(55302627-55302663)
[»] scaffold0014 (1 HSPs)
scaffold0014 (63-399)||(81083-81421)
[»] chr6 (9 HSPs)
chr6 (1-399)||(17758936-17759321)
chr6 (58-154)||(11137791-11137891)
chr6 (335-391)||(28038258-28038314)
chr6 (333-393)||(5406749-5406809)
chr6 (333-393)||(5411074-5411134)
chr6 (77-180)||(22615406-22615509)
chr6 (87-153)||(30445042-30445108)
chr6 (340-398)||(30517571-30517629)
chr6 (54-114)||(11137930-11137991)
[»] scaffold0176 (1 HSPs)
scaffold0176 (391-542)||(18547-18697)
[»] chr4 (20 HSPs)
chr4 (54-399)||(35371079-35371432)
chr4 (1-115)||(54882184-54882299)
chr4 (331-387)||(54882355-54882411)
chr4 (54-178)||(3577620-3577748)
chr4 (340-416)||(36770955-36771031)
chr4 (340-415)||(29055908-29055983)
chr4 (504-542)||(8653182-8653220)
chr4 (504-542)||(8664989-8665027)
chr4 (181-227)||(54882279-54882325)
chr4 (54-152)||(3577451-3577553)
chr4 (483-542)||(10071446-10071505)
chr4 (116-199)||(20268441-20268524)
chr4 (54-178)||(14788204-14788330)
chr4 (54-178)||(16454838-16454963)
chr4 (488-526)||(34570759-34570797)
chr4 (54-114)||(3577785-3577846)
chr4 (340-401)||(3792432-3792493)
chr4 (54-141)||(9174997-9175086)
chr4 (109-178)||(36920209-36920278)
chr4 (493-526)||(37740416-37740449)
[»] chr2 (15 HSPs)
chr2 (107-295)||(6396189-6396379)
chr2 (393-452)||(7450754-7450813)
chr2 (432-527)||(7450812-7450911)
chr2 (483-542)||(1632279-1632338)
chr2 (94-192)||(30262388-30262488)
chr2 (72-153)||(42018319-42018400)
chr2 (54-138)||(41303773-41303857)
chr2 (54-132)||(13828971-13829050)
chr2 (54-171)||(21519039-21519158)
chr2 (323-398)||(37048021-37048096)
chr2 (338-395)||(13828836-13828893)
chr2 (79-141)||(16677158-16677221)
chr2 (176-401)||(35892740-35892969)
chr2 (335-401)||(31056685-31056751)
chr2 (54-161)||(22405142-22405251)
[»] scaffold0288 (1 HSPs)
scaffold0288 (54-358)||(16865-17184)
[»] chr5 (19 HSPs)
chr5 (485-542)||(213031-213089)
chr5 (102-294)||(34700843-34701040)
chr5 (100-399)||(8037773-8038075)
chr5 (54-178)||(659498-659624)
chr5 (211-290)||(520631-520710)
chr5 (488-526)||(533554-533592)
chr5 (339-393)||(13487743-13487797)
chr5 (116-178)||(18509994-18510056)
chr5 (488-526)||(28751001-28751039)
chr5 (143-185)||(29139705-29139747)
chr5 (54-161)||(20504654-20504763)
chr5 (54-141)||(31544397-31544486)
chr5 (54-141)||(41586815-41586904)
chr5 (340-392)||(22828727-22828779)
chr5 (342-402)||(25785280-25785340)
chr5 (483-519)||(43592635-43592671)
chr5 (483-519)||(43599080-43599116)
chr5 (483-519)||(43604572-43604608)
chr5 (483-519)||(43610064-43610100)
[»] scaffold0005 (1 HSPs)
scaffold0005 (54-178)||(51400-51526)
[»] scaffold0491 (1 HSPs)
scaffold0491 (483-520)||(11608-11645)


Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 6431032 - 6431592
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcactctgggggccaagaggttatggtgtaggcttgcggaactacctaaaatcttagtgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6431032 taattggaggcaagtgaatcttcgggaggctgagtttgatcactctgggggccaagaggttatggtgtaggcttgcggaactacctaaaatcctagtgca 6431131  T
Q  101 gttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaagga 200  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6431132 gttggatgcaagaaacttcaagagggcggaaggcattccgaagtttgaagaggtaaaggtgaaaacttgtggaactacaaagtgttgttggatgcaagga 6431231  T
Q  201 ataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattggtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6431232 ataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattggtt 6431331  T
Q  301 ttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6431332 ttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgag 6431431  T
Q  401 atgtggctcaaaaatgaaaattgagaaagtgttgga-------------------atcgtgacacgattttcaaggccgtgaatgggtgtgctctggaat 481  Q
    ||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||     
T  6431432 atgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgattttgggatcgtgacacgattttcaaggccgtgaatgggtgtgctctggaag 6431531  T
Q  482 tcaaatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6431532 ccaaatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgtttt 6431592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 4509807 - 4509244
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcact-ctgggggcc-aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagt 97  Q
    |||||||||||||||||||||||||||||  | ||||||||||| | ||||||| |||||||||||||||||||||| ||||||| |||||| || ||||    
T  4509807 taattggaggcaagtgaatcttcgggaggacgggtttgatcactacggggggccgaagaggttatggtgtaggcttgtggaactatctaaaaatcctagt 4509708  T
Q  98 gcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaa 197  Q
    | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  4509707 gtagttggatgcaaggaacttcaagaaggcggaaggcattccgaagtttgaagaggtaaaggtgaaaacttgtggaactacaaagtgtagttggatgcaa 4509608  T
Q  198 ggaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattg 297  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||    
T  4509607 ggaataggacttgaaagcttgtggaattaccgagggtggttggatgcaagtggaggtcagattgtggatcaaggttcaagcggggctttggacttgattg 4509508  T
Q  298 gttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgtt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  4509507 gttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattaacatcatcatcattttagagtcaaggtggagaattgtt 4509408  T
Q  398 gaaatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacga-------------------ttttcaaggccgtgaatgggtgtgctctgg 478  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||| |    
T  4509407 gagatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgattttgggatcgtgacacgattttcaaggccgtgaatgggtgtgctctag 4509308  T
Q  479 aattcaaatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    ||  |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  4509307 aagccaaatcgtgacacgatgtgggaaaacatgacacgaatttgacagatctgaaacacgtttt 4509244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 4511649 - 4511086
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcact-ctgggggcc-aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagt 97  Q
    |||||||||||||||||||||||||||||  | ||||||||||| | ||||||| |||||||||||||||||||||| ||||||| |||||| || ||||    
T  4511649 taattggaggcaagtgaatcttcgggaggacgggtttgatcactacggggggccgaagaggttatggtgtaggcttgtggaactatctaaaaatcctagt 4511550  T
Q  98 gcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaa 197  Q
    | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  4511549 gtagttggatgcaaggaacttcaagaaggcggaaggcattccgaagtttgaagaggtaaaggtgaaaacttgtggaactacaaagtgtagttggatgcaa 4511450  T
Q  198 ggaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattg 297  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||    
T  4511449 ggaataggacttgaaagcttgtggaattaccgagggtggttggatgcaagtggaggtcagattgtggatcaaggttcaagcggggctttggacttgattg 4511350  T
Q  298 gttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgtt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  4511349 gttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattaacatcatcatcattttagagtcaaggtggagaattgtt 4511250  T
Q  398 gaaatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacga-------------------ttttcaaggccgtgaatgggtgtgctctgg 478  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||| |    
T  4511249 gagatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgattttgggatcgtgacacgattttcaaggccgtgaatgggtgtgctctag 4511150  T
Q  479 aattcaaatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    ||  |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  4511149 aagccaaatcgtgacacgatgtgggaaaacatgacacgaatttgacagatctgaaacacgtttt 4511086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 444 - 542
Target Start/End: Complemental strand, 4513034 - 4512936
Alignment:
Q  444 cacgattttcaaggccgtgaatgggtgtgctctggaattcaaatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  4513034 cacgattttcaaggccgtgaatgggtgtgctctagaagccaaatcgtgacacgatttggaaaaacgtgacacgattttgacagatctgaaacacgtttt 4512936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 500 - 542
Target Start/End: Original strand, 30814344 - 30814386
Alignment:
Q  500 tgggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30814344 tgggaaaacgtgacacgattttgacagatctgaaacacgtttt 30814386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 44011341 - 44011265
Alignment:
Q  340 ggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaatgtggctcaaaaatg 416  Q
    |||| ||||||||||||||   |||||||  |||||||||||||||||||||||| |||||| ||| ||||||||||    
T  44011341 ggtgattgatggttaaattgacatcatcactattttagagtcaaggtggagaattattgaaaagtgactcaaaaatg 44011265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 6048210 - 6048307
Alignment:
Q  60 ttatggtgtaggcttgcggaactacctaaaatcttagtgcagttggatgcaagga---acttcaagagggcggaaggtattccgaagtttgaagaggt 154  Q
    ||||||||||| ||||  ||||||||||||||| ||||| |||||||||||||||    |||||||| ||||||||| ||||||| | || |||||||    
T  6048210 ttatggtgtagacttgtagaactacctaaaatcctagtgtagttggatgcaaggatggtcttcaagaaggcggaaggcattccgatggttaaagaggt 6048307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 4513104 - 4513054
Alignment:
Q  393 ttgttgaaatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtga 443  Q
    ||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  4513104 ttgttgagatgtgactcaaaaatgaatattgagaaagtgttggaatcgtga 4513054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 26214625 - 26214673
Alignment:
Q  345 ttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    |||||||||||||| | ||||| |||| |||||||||||||||||||||    
T  26214625 ttgatggttaaattggcatcattatcaatttagagtcaaggtggagaat 26214673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 38395931 - 38395986
Alignment:
Q  337 aatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    |||||||||||||| ||||||||| |||||||  | |||||||||||||||||||||    
T  38395931 aatggtggttgatg-ttaaattagcatcatcactaatttagagtcaaggtggagaat 38395986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 2761685 - 2761647
Alignment:
Q  488 cgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  2761685 cgtgtcacgatttgggaaaacgtgacacgattttgacag 2761647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 14070216 - 14070178
Alignment:
Q  488 cgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  14070216 cgtgtcacgatttgggaaaacgtgacacgattttgacag 14070178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 14380244 - 14380206
Alignment:
Q  488 cgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  14380244 cgtgtcacgatttgggaaaacgtgacacgattttgacag 14380206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 20298846 - 20298972
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccgaagtttgaaga 151  Q
    ||||||||| |||| | ||||| |||||||||||||| || ||||| ||||||| |||||||| |||| ||| ||||||||  ||||||| |  |||||     
T  20298846 aagaggttaaggtgaatgcttgtggaactacctaaaattcctagtgtagttggactgcaaggaccttcgagaaggcggaagacattccgagggctgaagg 20298945  T
Q  152 ggtaaaggtgaaaagttgtggaactac 178  Q
    ||| ||||||   | ||||||||||||    
T  20298946 ggttaaggtgtgcacttgtggaactac 20298972  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 48491124 - 48491178
Alignment:
Q  339 tggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    |||||||||||||||||| | | |||||||||| |||  ||||||||||||||||    
T  48491124 tggtggttgatggttaaagtggcatcatcatcaatttgaagtcaaggtggagaat 48491178  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 20298999 - 20299068
Alignment:
Q  109 caaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactac 178  Q
    |||||| |||||| ||||||||||| ||||||| | |||||||||| | |||| ||| ||||||| ||||    
T  20298999 caaggatcttcaaaagggcggaaggcattccgatggttgaagaggtcagggtgtaaacttgtggagctac 20299068  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 542
Target Start/End: Complemental strand, 34311296 - 34311264
Alignment:
Q  510 tgacacgattttgacagatctgaaacacgtttt 542  Q
    |||||||||||| ||||||||||||||||||||    
T  34311296 tgacacgattttcacagatctgaaacacgtttt 34311264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 19753570 - 19754023
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcactctgggggcc-aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtg 98  Q
    |||||||||||||||||||||||||||||  | |||||||||||| ||||||| |||||||||||||||||||||| | |||||||||||| || |||||    
T  19753570 taattggaggcaagtgaatcttcgggaggacgggtttgatcactccgggggccgaagaggttatggtgtaggcttgtgtaactacctaaaaatcctagtg 19753669  T
Q  99 cagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaag 198  Q
     ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  19753670 tagttggatgcaagtaacttcaagagggcggaaggcattccgaagtttgaagaggtaaaggtgaaaaattgtggaactacaaagtgtagttggatgcaag 19753769  T
Q  199 gaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattgg 298  Q
    |||||||||||||||||||||||||| |  ||||||| || ||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  19753770 gaataagacttggaagcttgtggaacaattgagggtgatttgatgcaaatggaggtcggagtgtggatcaaggttcaaacggggctttggacttgattgg 19753869  T
Q  299 ttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttg 398  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||    
T  19753870 ttttgtcttgagggattgtttaaggcaaggataaggagaatggtggttgatggttaaattaggatcatcatcattttatagtcaaggtgaagaattgttg 19753969  T
Q  399 aaatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgatttt 452  Q
    | |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  19753970 agatgtggctaaaaaacgaaaattgagaaagtgttggaatcgtgacacgatttt 19754023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 54 - 458
Target Start/End: Complemental strand, 13548200 - 13547793
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagag 152  Q
    |||||||||||||||||||||| |||||||||||||| || ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  13548200 aagaggttatggtgtaggcttgtggaactacctaaaaatcctagtttagttggatgcaaggaacttcaagagggcggaaggcattccgaagtttgaaaag 13548101  T
Q  153 gtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaaggaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggag 252  Q
    ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13548100 gtaaaggtgaaaacttgtggaactacaaagtgtagtcggatgcaaggaataagacttggaagcttgtggaactaccgagggtgtttggatgcaagtggag 13548001  T
Q  253 gtcggagtatggatcaaggttcaagcggagctttggacttgattggttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggt 352  Q
    || || || ||||||||||||||||||| |||||||||| |||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||    
T  13548000 gttggtgtgtggatcaaggttcaagcggtgctttggactagattggctttgtcttgaggtactgttcaaggcaaggttaaggagaatggtggttgatggt 13547901  T
Q  353 taaattagtatcatcatcattttagagtcaaggtggagaattgttga-aatgtggctcaaaaatga-aaattgagaaagtgttggaatcgtgacacgatt 450  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |    ||  |||| ||||||||||||| |||||||    
T  13547900 taaattagcatcatcatcattttagagtcaatgtggagaattgttgagaatgtgactcaaaaattagtgttttggaaaatgttggaatcgtggcacgatt 13547801  T
Q  451 ttcaaggc 458  Q
    ||||||||    
T  13547800 ttcaaggc 13547793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 31928841 - 31928443
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcactctgggggcc-aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtg 98  Q
    |||||||||||||||||||||||||||||  | |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| || |||||    
T  31928841 taattggaggcaagtgaatcttcgggaggacgggtttgatcactccgggggccgaagaggttatggtgtaggcttgtggaactacctaaaaatcctagtg 31928742  T
Q  99 cagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaag 198  Q
     |||||||||||||||||||||||||  ||||||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  31928741 tagttggatgcaaggaacttcaagagatcggaaggcatttcgaggtttgaagaggtaaaggtgaaaacttgtggaactacaaagtgcagttggatgcaag 31928642  T
Q  199 gaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattgg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| | |||||||||||||||||    
T  31928641 gaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggtgtgtggatcaaagttcaagcagggctttggacttgattgg 31928542  T
Q  299 ttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgtt 397  Q
    |||||||||| || || ||||||||||||| ||||||| | ||||||||||||||||||| | |||| ||| | |||||||||||||||||||||||||    
T  31928541 ttttgtcttggggaatagttcaaggcaaggttaaggagcaaggtggttgatggttaaattggcatcaccataaatttagagtcaaggtggagaattgtt 31928443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 54 - 365
Target Start/End: Original strand, 41141256 - 41141572
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaat-cttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagag 152  Q
    ||||||||||| ||| | || ||||||||||||||||| | | ||| ||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||    
T  41141256 aagaggttatgttgtggactagcggaactacctaaaattcctggtgtagttggatgcaaggatcttcaagagggcagaaggcattccgaggtttgaagag 41141355  T
Q  153 gtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaagg-----aataagacttggaagcttgtggaactaccgagggtggttggatgcaag 247  Q
    |||| | || ||  ||||| ||||||||||||| |||||||||||||     ||| ||||||| ||  ||||||||||||||||||||||||||||||||    
T  41141356 gtaaggatggaagcttgtgtaactacaaagtgtagttggatgcaaggtgaggaatcagacttgaaaatttgtggaactaccgagggtggttggatgcaag 41141455  T
Q  248 tggaggtcggagtatggatcaaggttcaagcggagctttggacttgattggttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttg 347  Q
    |||||||||| |||| ||||| ||||||||||  | ||| |||||||| ||||||||||||| ||| || ||||||||||| ||||||  |  |||||||    
T  41141456 tggaggtcggtgtatagatcagggttcaagcgaggatttagacttgatcggttttgtcttga-ggaatggtcaaggcaaggttaaggaccaacgtggttg 41141554  T
Q  348 atggttaaattagtatca 365  Q
    || |||||||||| ||||    
T  41141555 atagttaaattagcatca 41141572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 437 - 542
Target Start/End: Original strand, 19752202 - 19752307
Alignment:
Q  437 atcgtgacacgattttcaaggccgtgaatgggtgtgctctggaattcaaatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaaca 536  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19752202 atcgtggcacgattttcaaggtcgtgaatgggtgtgctctggaagccaaatcgtgacacgatatgggaaaacgtgacacgattttgacggatctgaaaca 19752301  T
Q  537 cgtttt 542  Q
    ||||||    
T  19752302 cgtttt 19752307  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 50167806 - 50167718
Alignment:
Q  325 aaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaatgtggctcaaaa 413  Q
    ||||| |||||||||||||||||||||||||| |   |||| ||||| |||||||||||||||||||| |||||||||||| |||||||    
T  50167806 aaggaaaaggagaatggtggttgatggttaaagtttcatcaccatcaatttagagtcaaggtggagaaatgttgaaatgtgtctcaaaa 50167718  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 418
Target Start/End: Original strand, 776784 - 776871
Alignment:
Q  331 aaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaatgtggctcaaaaatgaa 418  Q
    |||||||||||||||||||||||||| |   |||| ||||| |||||||||||||||||||| |||||||||||| ||||||| ||||    
T  776784 aaggagaatggtggttgatggttaaagttccatcaccatcaatttagagtcaaggtggagaaatgttgaaatgtgtctcaaaattgaa 776871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 13126303 - 13126178
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagag 152  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||| |||| | | ||||||||  |||| || |  |||||||    
T  13126303 aagaggttatggtgtagacttgtggaactacctaaaattcttagtgtagttggatgcaaggatcttcgacaaggcggaagacattctgatggctgaagag 13126204  T
Q  153 gtaaaggtgaaaagttgtggaactac 178  Q
    || |||||| | | ||| ||||||||    
T  13126203 gttaaggtgtagacttgcggaactac 13126178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 444 - 498
Target Start/End: Original strand, 19754034 - 19754088
Alignment:
Q  444 cacgattttcaaggccgtgaatgggtgtgctctggaattcaaatcgtgacacgat 498  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  19754034 cacgattttcaaggctgtgaatgggtgtgctctggaagccaaatcgtgacacgat 19754088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 485 - 539
Target Start/End: Complemental strand, 31928405 - 31928351
Alignment:
Q  485 aatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgt 539  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  31928405 aatcgtgacacgattttggaaaacgtgatacgattttgacagatctgaaacacgt 31928351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 19752140 - 19752189
Alignment:
Q  394 tgttgaaatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtga 443  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  19752140 tgttgagatgtggctcaaaaatgaaaattgagaaattgttggaatcgtga 19752189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 13126208 - 13126107
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagag 152  Q
    ||||||||| ||||||| ||||||||||||||||||| || ||| | ||||| ||||||||| |||||||| || |||||| | || || | ||||||||    
T  13126208 aagaggttaaggtgtagacttgcggaactacctaaaattcctagcgtagttgcatgcaaggatcttcaagaaggtggaaggaaatctgatggttgaagag 13126109  T
Q  153 gt 154  Q
    ||    
T  13126108 gt 13126107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 28842021 - 28842110
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccga 141  Q
    |||| ||||||||||| ||||| |||||||||||||| || ||||| ||||||| |||||||| |||| ||| ||||||||  |||||||    
T  28842021 aagatgttatggtgtacgcttgtggaactacctaaaattcctagtgtagttggactgcaaggaccttcgagaaggcggaagacattccga 28842110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 10742247 - 10742307
Alignment:
Q  94 tagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggt 154  Q
    ||||| ||||||||||||||| |||||||| |||| |||| ||||||| | ||||||||||    
T  10742247 tagtgtagttggatgcaaggatcttcaagaaggcgaaaggcattccgatggttgaagaggt 10742307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 526
Target Start/End: Complemental strand, 28220614 - 28220571
Alignment:
Q  483 caaatcgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||| |||| |||||| |||||||||||||||||||||||||||    
T  28220614 caaaacgtgtcacgatttgggaaaacgtgacacgattttgacag 28220571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 542
Target Start/End: Original strand, 19754078 - 19754112
Alignment:
Q  508 cgtgacacgattttgacagatctgaaacacgtttt 542  Q
    ||||||||||||||||||||||| |||||||||||    
T  19754078 cgtgacacgattttgacagatctaaaacacgtttt 19754112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 30476831 - 30476793
Alignment:
Q  488 cgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  30476831 cgtgtcacgatttgggaaaacgtgacacgattttgacag 30476793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 401
Target Start/End: Original strand, 41360468 - 41360533
Alignment:
Q  335 agaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaa 401  Q
    ||||||||||||||||||||| | |  |||| |||||  ||||||||||||||||||| ||||||||    
T  41360468 agaatggtggttgatggttaattgac-atcaccatcaaattagagtcaaggtggagaaatgttgaaa 41360533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 542
Target Start/End: Complemental strand, 42298560 - 42298522
Alignment:
Q  504 aaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  42298560 aaaatgtgacacgattttgacagatctgaaacatgtttt 42298522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 155220 - 155317
Alignment:
Q  58 ggttatggtgtaggcttgcggaactacctaaaat-cttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggt 154  Q
    ||||| ||||||  |||| ||||||||||||||| | ||||| ||||||||||||  | || ||||| ||| ||||| ||||||| | ||||||||||    
T  155220 ggttaaggtgtacacttgtggaactacctaaaattcctagtgtagttggatgcaataatctccaagaaggcagaaggcattccgatggttgaagaggt 155317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 47179026 - 47179115
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccga 141  Q
    |||| ||||||||| | ||||| || ||||||||||| || ||||| ||||||| |||||||| |||| ||| |||||||| ||||||||    
T  47179026 aagatgttatggtgaaagcttgtgggactacctaaaactcctagtgtagttggactgcaaggaccttcgagaaggcggaagatattccga 47179115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 49918131 - 49918172
Alignment:
Q  485 aatcgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    ||||||| |||||| |||||||| ||||||||||||||||||    
T  49918131 aatcgtgtcacgatttgggaaaatgtgacacgattttgacag 49918172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 47102277 - 47102341
Alignment:
Q  338 atggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaat 402  Q
    |||||||||||||||||||||   ||||||| || ||   ||||||||||||||| |||||||||    
T  47102277 atggtggttgatggttaaattgacatcatcaccaattagaagtcaaggtggagaaatgttgaaat 47102341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 240; Significance: 1e-132; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 40220604 - 40220186
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcactctgggggcc-aagaggttatggtgtaggcttgcggaactacctaaaatcttagtgc 99  Q
    |||||||||||||||||||||||| ||||  |  ||||||||||| ||||| | |||||||||||||| || |||| |||||||||||||||| |||||     
T  40220604 taattggaggcaagtgaatcttcgtgaggacggatttgatcactccgggggtcgaagaggttatggtggagacttgtggaactacctaaaatcctagtgt 40220505  T
Q  100 agttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaa--ggtgaaaagttgtggaactacaaagtgttgttggatgcaa 197  Q
     |||||||||||| | |||||| || |||||||| ||||||| | ||||||||||| |  |||| ||  ||||||| ||||   |||| | |||||||||    
T  40220504 ggttggatgcaagaatcttcaaaagagcggaaggcattccgagggttgaagaggtacaagggtggaagcttgtggagctacttggtgtagctggatgcaa 40220405  T
Q  198 ggaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattg 297  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||    
T  40220404 ggaataagacttggaagcttgtggaactaccgaggatggttggatgcaagtggaggccggtgtttggatcaaggttcaagcggggctttggacttgattg 40220305  T
Q  298 gttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgtt 397  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40220304 gttttgccttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagcatcatcatcattttagagtcaaggtggagaattgtt 40220205  T
Q  398 gaaatgtggctcaaaaatg 416  Q
    || || || ||||||||||    
T  40220204 gagatatgactcaaaaatg 40220186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 42436194 - 42435799
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcactctgggggcc-aagaggttatggtgtaggcttgcggaactacctaaaatcttagtgc 99  Q
    ||||||||||||||||||| ||||||||||   |||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||| |||||     
T  42436194 taattggaggcaagtgaatattcgggaggcccggtttgatcactctgggggccgaagaggttatggtggagacttgtggaactacctaaaatcctagtgt 42436095  T
Q  100 agttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaa--ggtgaaaagttgtggaactacaaagtgttgttggatgcaa 197  Q
     |||||||||||||| ||||||||| |||| ||| ||||||| | ||||||||||| |  |||| ||  ||||||| ||||   |||| |||||| ||||    
T  42436094 ggttggatgcaaggatcttcaagagagcgggaggcattccgagggttgaagaggtacaagggtggaagcttgtggagctacttggtgtagttggacgcaa 42435995  T
Q  198 ggaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||    
T  42435994 ggaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggtgtgtggatcaaggttcaagcggggctttggacttgattg 42435895  T
Q  298 gttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    ||||||||||| || ||  |||||||||||| |||||||| ||||| |||||||||||| | || ||||||||| |||  || |||||||||||||    
T  42435894 gttttgtcttggggaataattcaaggcaaggttaaggagattggtgattgatggttaaagtggtctcatcatcaatttgaaggcaaggtggagaat 42435799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 94 - 398
Target Start/End: Complemental strand, 20687094 - 20686787
Alignment:
Q  94 tagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggat 193  Q
    ||||| |||||| |||||||| |||||||||||| ||||| |||| || ||||||||||||||| ||||||| || ||| ||| |||| ||| |||  ||    
T  20687094 tagtgtagttgggtgcaaggatcttcaagagggctgaaggcattctgaggtttgaagaggtaaaagtgaaaacttatgggacttcaaattgtagttatat 20686995  T
Q  194 gcaagg----aataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttgga 289  Q
    ||||||    |||   | |||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||| ||    ||||||    
T  20686994 gcaaggggaaaattgaatttggaagcttgtgggactaccgagggtggttggatgcaagtggaggtcggtgtgtagatcaaggttcaaacgagaatttgga 20686895  T
Q  290 cttgattggttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtgga 389  Q
     ||||||||||||||||||| |||    ||||||||||| ||||||  | ||||||||||||||||||| | |||| ||  | ||| ||||||||| |||    
T  20686894 gttgattggttttgtcttga-ggagaagtcaaggcaaggttaaggattaaggtggttgatggttaaattggcatcaccacaaatttggagtcaaggcgga 20686796  T
Q  390 gaattgttg 398  Q
     ||||||||    
T  20686795 aaattgttg 20686787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 44353295 - 44353416
Alignment:
Q  425 gaaagtgttggaatcgtgacacgattttcaaggccgtg----aatgggtgtgctctggaattcaaatcgtgacacgatatgggaaaacgtgacacgattt 520  Q
    |||| |||||||| |||||||||| |||||||||||||    ||||||||||||||||||  ||||| |||||| ||| ||||||||| |||||||||||    
T  44353295 gaaaatgttggaaccgtgacacgaatttcaaggccgtgcgtgaatgggtgtgctctggaagccaaattgtgacatgatttgggaaaacatgacacgattt 44353394  T
Q  521 tgacagatctgaaacacgtttt 542  Q
    |||||| |||||||||||||||    
T  44353395 tgacagctctgaaacacgtttt 44353416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 29797075 - 29796976
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaatcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagagg 153  Q
    |||||| |||||||||| ||||||||||||| ||||||| ||||| ||||||||| ||||| ||||||| |||||||| | ||||||| | |||||||||    
T  29797075 aagagggtatggtgtagacttgcggaactacataaaatcctagtgtagttggatgtaaggatcttcaagggggcggaaagcattccgagggttgaagagg 29796976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 331 - 417
Target Start/End: Original strand, 10014676 - 10014762
Alignment:
Q  331 aaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaatgtggctcaaaaatga 417  Q
    |||||||||||||||| || |||||| | | ||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||    
T  10014676 aaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatga 10014762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 17849319 - 17849419
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaat-cttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagag 152  Q
    |||||| | |||||||| |||| ||||||||||||||| | ||||| ||||||||||||||| |||||||| ||||||||| ||||||| | ||||||||    
T  17849319 aagagggtttggtgtagacttgtggaactacctaaaattcctagtgtagttggatgcaaggatcttcaagaaggcggaaggcattccgatggttgaagag 17849418  T
Q  153 g 153  Q
    |    
T  17849419 g 17849419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 15949126 - 15949182
Alignment:
Q  345 ttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaa 401  Q
    |||||||||||||| ||||||||  || |||||||||||||||||||| ||||||||    
T  15949126 ttgatggttaaattggtatcatcgccaatttagagtcaaggtggagaaatgttgaaa 15949182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 31574460 - 31574360
Alignment:
Q  58 ggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaag---gaacttcaagagggcggaaggtattccgaagtttgaagagg 153  Q
    ||||||||||||  ||||||||||||||||||| || ||||| ||||||||| |||   || |||||||| ||||||||  ||| ||||| |||||||||    
T  31574460 ggttatggtgtatacttgcggaactacctaaaattcctagtgtagttggatgtaaggatgatcttcaagaaggcggaagacatttcgaaggttgaagagg 31574361  T
Q  154 t 154  Q
    |    
T  31574360 t 31574360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 401
Target Start/End: Complemental strand, 19492313 - 19492248
Alignment:
Q  335 agaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaa 401  Q
    ||||||||||||||||||||| | |  |||| |||||  ||||||||||||||||||| ||||||||    
T  19492313 agaatggtggttgatggttaattgac-atcaccatcaaattagagtcaaggtggagaaatgttgaaa 19492248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 401
Target Start/End: Complemental strand, 26268843 - 26268777
Alignment:
Q  335 agaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaa 401  Q
    |||| |||| ||||| |||||||| | |||||||  | |||||||||||||||||||| ||||||||    
T  26268843 agaaaggtgattgatagttaaattggcatcatcactaatttagagtcaaggtggagaaatgttgaaa 26268777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 43036208 - 43036246
Alignment:
Q  488 cgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  43036208 cgtgtcacgatttgggaaaacgtgacacgattttgacag 43036246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 15072291 - 15072380
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccga 141  Q
    ||||||||| |||| | ||||| |||||||||||||| || ||||| ||||||| |||||||| |||| ||| | |||||| ||||||||    
T  15072291 aagaggttaaggtgaatgcttgtggaactacctaaaattcctagtgtagttggactgcaaggaccttcgagaagacggaagatattccga 15072380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 26402624 - 26402681
Alignment:
Q  340 ggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgtt 397  Q
    |||||||||||||||||||   |||| || || |||||||||||||||||||| ||||    
T  26402624 ggtggttgatggttaaatttacatcaccaccaatttagagtcaaggtggagaaatgtt 26402681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 34254959 - 34254899
Alignment:
Q  333 ggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    ||||| |||||||||||||||||| |   |||||||||| |||  ||||||||||||||||    
T  34254959 ggagattggtggttgatggttaaagtgacatcatcatcaatttgaagtcaaggtggagaat 34254899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 43402993 - 43402599
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcactctgggggcc-aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtg 98  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||||    
T  43402993 taattggaggcaagtgaatcttcgggaggacgggtttgatcactctgggggccgaagaggttatggtgtaggcttgtggaactacctaaaaatcctagtg 43402894  T
Q  99 cagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaag 198  Q
     ||||||||||||||||||||||||| |||||||| |||  || |||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  43402893 tagttggatgcaaggaacttcaagagagcggaaggcattatgaggtttcaagaggtaaaggtgtaaacttgtggaactacaaagtgtagttggatgcaag 43402794  T
Q  199 gaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattgg 298  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| || ||||||||||||||||| | ||||||||||| ||| |    
T  43402793 gaataagacttggaagcttgtggaactaccgaggattgttggatgcaagtggaggtcggtgtgtggatcaaggttcaagcagggctttggacttaatttg 43402694  T
Q  299 ttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    |||||||||| || || ||||||||||||| |||||||| |||||||||||||||||| | | |||||| ||| |||  || |||||||||||||    
T  43402693 ttttgtcttggggaatagttcaaggcaaggttaaggagattggtggttgatggttaaagtggcatcatcttcaatttgaaggcaaggtggagaat 43402599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 54 - 399
Target Start/End: Original strand, 1686189 - 1686541
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagag 152  Q
    ||||||||||||| ||| |||| |||||||||||||| || ||||| ||  |  || |  || |||||| || | | |||||||||||| ||||| ||||    
T  1686189 aagaggttatggtttagacttgtggaactacctaaaaatcctagtgtagcagagtgaagagatcttcaaaagtgtgaaaggtattccgaggtttgtagag 1686288  T
Q  153 gtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaaggaa------taagacttggaagcttgtggaactaccgagggtggttggatgcaa 246  Q
    ||||||||||||  |||||| |||||||||||| ||||||||||||||       ||| |||||||||||||||| |||||||| |||||||  || |||    
T  1686289 gtaaaggtgaaagcttgtgggactacaaagtgtagttggatgcaaggagaaaaagtaaaacttggaagcttgtgggactaccgatggtggttacatacaa 1686388  T
Q  247 gtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattggttttgtcttgagggattgttcaaggcaaggataaggagaatggtggtt 346  Q
    ||||||||||| || | ||||||||| |||| |  | |||||||||||||||||||||||||||| || ||||||||||||| ||||||| | |||| ||    
T  1686389 gtggaggtcggtgtgtagatcaaggtccaagtgaggatttggacttgattggttttgtcttgaggaatagttcaaggcaaggttaaggagcaaggtgatt 1686488  T
Q  347 gatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttga 399  Q
    |||||||||| | | |||| |   | ||||||||||||| |||||||| ||||    
T  1686489 gatggttaaaatggcatcaccgcaaatttagagtcaaggaggagaatttttga 1686541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 542
Target Start/End: Original strand, 30235686 - 30235745
Alignment:
Q  483 caaatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  30235686 caaaacgtgacacgattttggaaaacgtgacacgattttgacagatctgaaacacatttt 30235745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 398
Target Start/End: Original strand, 4386445 - 4386505
Alignment:
Q  338 atggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttg 398  Q
    |||||||||||||||||||||   ||||||| || |||||||||||||||||||| |||||    
T  4386445 atggtggttgatggttaaattgacatcatcaccaatttagagtcaaggtggagaaatgttg 4386505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 431
Target Start/End: Original strand, 34490591 - 34490630
Alignment:
Q  392 attgttgaaatgtggctcaaaaatgaaaattgagaaagtg 431  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  34490591 attgttgagatgtggctcaaaaatgaaaattgagaaagtg 34490630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 15824350 - 15824297
Alignment:
Q  79 aactacctaaaatcttagtgcagttggatgcaaggaacttcaagagggcggaag 132  Q
    |||||||||||||| ||||| ||||||||||||||| ||| |||| ||||||||    
T  15824350 aactacctaaaatcctagtgtagttggatgcaaggatctttaagatggcggaag 15824297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 2075763 - 2075684
Alignment:
Q  80 actacctaaaatcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaagg 159  Q
    |||||| |||||| ||||  ||||||||||||||| ||| |||||| ||||||  |||| |||| ||||||||| |||||    
T  2075763 actaccaaaaatcatagtatagttggatgcaaggatctttaagaggacggaagacattctgaaggttgaagaggcaaagg 2075684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 28100808 - 28100682
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccgaagtttgaaga 151  Q
    ||||||||| |||| | ||||| |||||||||||||| || ||||| || |||| |||||||| |||| ||| ||||||||  ||||||| |  |||||     
T  28100808 aagaggttaaggtgaatgcttgtggaactacctaaaattcatagtgtagatggactgcaaggaccttcgagaaggcggaagacattccgatggctgaagg 28100709  T
Q  152 ggtaaaggtgaaaagttgtggaactac 178  Q
    ||| |||||| ||| ||||||| ||||    
T  28100708 ggttaaggtgtaaacttgtggagctac 28100682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 29810653 - 29810691
Alignment:
Q  488 cgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  29810653 cgtgtcacgatttgggaaaacgtgacacgattttgacag 29810691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 44331085 - 44331147
Alignment:
Q  331 aaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    ||||||| |||||||||||||||||| |   |||||||||| |||  ||||||||||||||||    
T  44331085 aaggagattggtggttgatggttaaagtgacatcatcatcaatttgaagtcaaggtggagaat 44331147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 457549 - 457638
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccga 141  Q
    |||| ||||||||| | ||||| || ||||||||||| || ||||| ||||||| |||||||| |||| ||| |||||||| ||||||||    
T  457549 aagatgttatggtgaaagcttgtgggactacctaaaactcctagtgtagttggactgcaaggaccttcgagaaggcggaagatattccga 457638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 3316043 - 3316132
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccga 141  Q
    |||| ||||||||| | ||||| |||||||||||||| |||||| | ||||||| |||||||| |||| ||| ||||||||  |||||||    
T  3316043 aagatgttatggtgaatgcttgtggaactacctaaaattcttagcgtagttggactgcaaggaccttcgagaaggcggaagacattccga 3316132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 30709464 - 30709505
Alignment:
Q  485 aatcgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    ||||||| |||||| ||| |||||||||||||||||||||||    
T  30709464 aatcgtgtcacgatttggaaaaacgtgacacgattttgacag 30709505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 5258776 - 5258716
Alignment:
Q  333 ggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    ||||| |||||||||||||||||| |   |||||||||| |||  ||||||||||||||||    
T  5258776 ggagattggtggttgatggttaaagtgacatcatcatcaatttgaagtcaaggtggagaat 5258716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 7763970 - 7764026
Alignment:
Q  333 ggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtgga 389  Q
    ||||| |||||||||||||||||| | | |||||||||| |||  ||||||||||||    
T  7763970 ggagattggtggttgatggttaaagtggcatcatcatcaatttgaagtcaaggtgga 7764026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 9634951 - 9634891
Alignment:
Q  333 ggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    ||||| |||||||||||||||||| |   |||||||||| |||  ||||||||||||||||    
T  9634951 ggagattggtggttgatggttaaagtgacatcatcatcagtttgaagtcaaggtggagaat 9634891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 27422331 - 27422429
Alignment:
Q  60 ttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaagga---acttcaagagggcggaaggtattccgaagtttgaagaggt 154  Q
    ||||||||||  |||| |||||||||||||| ||  |||| |||||||||||||||    |||||||| ||||||||| ||||| | | ||||||||||    
T  27422331 ttatggtgtaaacttgtggaactacctaaaattccaagtgtagttggatgcaaggatggtcttcaagaaggcggaaggcattccaatggttgaagaggt 27422429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 37407974 - 37408050
Alignment:
Q  332 aggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaatgtggct 408  Q
    |||||| || ||| ||||||||||| | | |||||||||| |||  ||||||||||||||| |||||| || |||||    
T  37407974 aggagattgatggctgatggttaaagtggcatcatcatcaatttgaagtcaaggtggagaaatgttgagatttggct 37408050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 55302663 - 55302627
Alignment:
Q  485 aatcgtgacacgatatgggaaaacgtgacacgatttt 521  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  55302663 aatcgtgacacgatttgggaaaacgtgatacgatttt 55302627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 63 - 399
Target Start/End: Complemental strand, 81421 - 81083
Alignment:
Q  63 tggtgtaggcttgcggaactacctaaa-atcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtg 161  Q
    ||||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |     
T  81421 tggtgtaggcttgtggaactacctaaatatcctagtgtagttggatgcaaggaacttcaagagggcggaaggcattccgtggtttgaagaggtaaagtta 81322  T
Q  162 aaaagttgtggaactacaaagtgttgttggatgcaaggaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagta 261  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||     
T  81321 aaaacttgtggaactacaaagtgtagttggatgcaaggaataagacttggaagcttgtggaactaccgagggtggctggatgcaagtggaggtcggtgtt 81222  T
Q  262 tggatcaaggttcaagcggagctttggacttgattggttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagt 361  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||| ||||||| | ||||||||||||||| ||| |     
T  81221 tggatcaaggttcaagcggggctttggacttgattgg-tttgtcttggggaattgttcaaggcaaggttaaggagcaaggtggttgatggttagattggc 81123  T
Q  362 atcatcatcattttagagtcaag--gtggagaattgttga 399  Q
    |||| ||  | ||||||||||||  |||||||||||||||    
T  81122 atcaccacaaatttagagtcaaggtgtggagaattgttga 81083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 6e-97; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 17758936 - 17759321
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcactctgggggcc-aagaggttatggtgtaggcttgcggaactacctaaaatcttagtgc 99  Q
    |||||||||||||||||||||||||||||    |||||||||||| || | || ||||||||         ||||| |||||||||||||||| |||||     
T  17758936 taattggaggcaagtgaatcttcgggaggacaggtttgatcactccggcgaccgaagaggtt---------gcttgtggaactacctaaaatcctagtgt 17759026  T
Q  100 agttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaagg 199  Q
    ||     ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||    
T  17759027 ag-----tgcaaggaacttcaagagggcggaaggcattccgaggtttgaaaaggtaaaggtgaaaacttgtggaactacaaagtgtagttgaatgcaagg 17759121  T
Q  200 aataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattggt 299  Q
    |||||||  |||||||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||| | ||||| |||||||||| |    
T  17759122 aataagatatggaagcttgtggaactaccaagggaggttggatgcaagtggaggtcggtgtgtggatcaaggttcaagcagggctttagacttgattgat 17759221  T
Q  300 tttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttga 399  Q
    ||||||||  || || ||||||||||| | ||||||| | ||||||||||||||||||| | |||| ||  | |||||||||||||||||||||||||||    
T  17759222 tttgtcttagggaatagttcaaggcaatgttaaggagcaaggtggttgatggttaaattggcatcaacacaaatttagagtcaaggtggagaattgttga 17759321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 11137791 - 11137891
Alignment:
Q  58 ggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaagga---acttcaagagggcggaaggtattccgaagtttgaagagg 153  Q
    ||||||||||||| |||| |||||||||||||| || ||||| |||||||||||||||    ||||| || ||||||||| ||||||| | |||||||||    
T  11137791 ggttatggtgtagacttgtggaactacctaaaattcctagtgtagttggatgcaaggatggtcttcatgaaggcggaaggcattccgatggttgaagagg 11137890  T
Q  154 t 154  Q
    |    
T  11137891 t 11137891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 28038314 - 28038258
Alignment:
Q  335 agaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggaga 391  Q
    |||||||||||||||||||||||| |||||||||  | |||| ||||||||||||||    
T  28038314 agaatggtggttgatggttaaattggtatcatcactaatttaaagtcaaggtggaga 28038258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 5406809 - 5406749
Alignment:
Q  333 ggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    ||||| |||||||||||||||||| | | |||||||||| |||  ||||||||||||||||    
T  5406809 ggagattggtggttgatggttaaagtggcatcatcatcaatttcaagtcaaggtggagaat 5406749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 5411134 - 5411074
Alignment:
Q  333 ggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    ||||| |||||||||||||||||| | | |||||||||| |||  ||||||||||||||||    
T  5411134 ggagattggtggttgatggttaaagtggcatcatcatcaatttcaagtcaaggtggagaat 5411074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 22615406 - 22615509
Alignment:
Q  77 ggaactacctaaaatcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaact 176  Q
    |||||||| |||| | |||||| |||| |||||||| | ||||||||| || ||||| |||| |||  ||||| ||||||  ||||||  ||||||||||    
T  22615406 ggaactacataaattattagtgtagtttgatgcaagaatcttcaagagagcagaaggcattctgaaagttgaaaaggtaagagtgaaagcttgtggaact 22615505  T
Q  177 acaa 180  Q
    ||||    
T  22615506 acaa 22615509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 30445042 - 30445108
Alignment:
Q  87 aaaatcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagagg 153  Q
    |||||| ||||| ||||  || ||||||||||||||| ||||||||| ||||||| | |||||||||    
T  30445042 aaaatcctagtgtagttacatacaaggaacttcaagaaggcggaaggcattccgatggttgaagagg 30445108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 30517571 - 30517629
Alignment:
Q  340 ggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttg 398  Q
    ||||||| ||||||||||| | |||| ||||| |||||||||||  |||||||||||||    
T  30517571 ggtggttaatggttaaattggcatcagcatcaatttagagtcaatatggagaattgttg 30517629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 11137930 - 11137991
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaagga 114  Q
    |||||||| |||||||| |||  |||||||||||||| || ||||| |||||||||||||||    
T  11137930 aagaggttgtggtgtagacttctggaactacctaaaattcctagtgtagttggatgcaagga 11137991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 391 - 542
Target Start/End: Complemental strand, 18697 - 18547
Alignment:
Q  391 aattgttgaaatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgattttcaaggccgtgaatgggtgtgctctggaattcaaatcgt 490  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||  ||||||||    
T  18697 aattgttgagatgtggctaaaaaatgaaa-ttgagaaagtgttggaatcgtggcacgattttcaaggttgtgaatgggtgtgttctggaagccaaatcgt 18599  T
Q  491 gacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  18598 gacacgatttgggaaaatgtgacacgattttgacagatttgaaacacgtttt 18547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 54 - 399
Target Start/End: Complemental strand, 35371432 - 35371079
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagag 152  Q
    |||| |||||||||||  |||| |||||||||||||| || ||||  |||||| ||||| || |||||||||| || |||  ||||  | ||||||||||    
T  35371432 aagatgttatggtgtaaacttgtggaactacctaaaagtcctagtatagttgggtgcaaagatcttcaagaggacgtaagacattctaaggtttgaagag 35371333  T
Q  153 gtaaaggtga--aaagttgtggaactacaaagtgttgttggatgcaagg-----aataagacttggaagcttgtggaactaccgagggtggttggatgca 245  Q
    ||||||||||  ||| ||  | ||||||||||| | |||||||||||||     ||||| | ||||||||| |||   ||||||||||||||||||||||    
T  35371332 gtaaaggtgagaaaacttacgaaactacaaagtttagttggatgcaaggtgaaaaataaaaattggaagctcgtgtgtctaccgagggtggttggatgca 35371233  T
Q  246 agtggaggtcggagtatggatcaaggttcaagcggagctttggacttgattggttttgtcttgagggattgttcaaggcaaggataaggagaatggtggt 345  Q
    |||| | |||   || ||||||||||||||||||    |||||| || ||||||||| |||||| | || |||||||| |||| ||||  | | | ||||    
T  35371232 agtgaaagtcaatgtgtggatcaaggttcaagcgagaatttggaatttattggttttatcttgatgaatagttcaaggtaaggttaagatgcaagttggt 35371133  T
Q  346 tgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttga 399  Q
    |||||||||||||   |||| ||| | |||||| |||||||||| |||||||||    
T  35371132 tgatggttaaattgacatcaccataaatttagattcaaggtggataattgttga 35371079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 54882184 - 54882299
Alignment:
Q  1 taattggaggcaagtgaatcttcgggaggctgagtttgatcactctgggggcc-aagaggttatggtgtaggcttgcggaactacctaaaatcttagtgc 99  Q
    |||||||||| ||||||||||||||||||  | |||||||||||| ||||||| |||| |||||||||||| |||| |||||||||||||||| |||||     
T  54882184 taattggaggaaagtgaatcttcgggaggacgggtttgatcactccgggggccgaagaagttatggtgtagtcttgtggaactacctaaaatcctagtgt 54882283  T
Q  100 agttggatgcaaggaa 115  Q
    |||||||| |||||||    
T  54882284 agttggattcaaggaa 54882299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 54882355 - 54882411
Alignment:
Q  331 aaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtg 387  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54882355 aaggagaatggtggttgatggttaaattagcatcatcatcattttagagtcaaggtg 54882411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 3577748 - 3577620
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaag---gaacttcaagagggcggaaggtattccgaagtttgaa 149  Q
    ||||||||||||||||| |||| |||||||||||||| || ||||| |||||||||||||   || |||||||| | ||||||| ||||||| | |||||    
T  3577748 aagaggttatggtgtagacttgtggaactacctaaaattcctagtgtagttggatgcaaggatgatcttcaagaagtcggaaggcattccgatggttgaa 3577649  T
Q  150 gaggtaaaggtgaaaagttgtggaactac 178  Q
    ||||| | |||| | | ||||||||||||    
T  3577648 gaggttatggtgtagacttgtggaactac 3577620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 36770955 - 36771031
Alignment:
Q  340 ggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaatgtggctcaaaaatg 416  Q
    |||| |||||||||||||| | |||||||  ||||||||||||||||| ||||||||| ||| ||| ||||||||||    
T  36770955 ggtgattgatggttaaatttgcatcatcactattttagagtcaaggtgaagaattgttaaaaagtgactcaaaaatg 36771031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 29055908 - 29055983
Alignment:
Q  340 ggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaatgtggctcaaaaat 415  Q
    ||||||| || |||||||| | |||| |||||||||||||||||||||||||| ||||| ||| || |||||||||    
T  29055908 ggtggttaattgttaaattggcatcaccatcattttagagtcaaggtggagaaatgttgtaatttgactcaaaaat 29055983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 504 - 542
Target Start/End: Original strand, 8653182 - 8653220
Alignment:
Q  504 aaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8653182 aaaacgtgacacgattttgacagatctgaaacacgtttt 8653220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 504 - 542
Target Start/End: Original strand, 8664989 - 8665027
Alignment:
Q  504 aaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8664989 aaaacgtgacacgattttgacagatctgaaacacgtttt 8665027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 54882279 - 54882325
Alignment:
Q  181 agtgttgttggatgcaaggaataagacttggaagcttgtggaactac 227  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  54882279 agtgtagttggattcaaggaataagacttggaagcttgtggaactac 54882325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 3577553 - 3577451
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaagga---acttcaagagggcggaaggtattccgaagtttgaa 149  Q
    ||||||||||||||||| |||  |||||||||||||| || ||||| |||||||||||||||    |||||||| ||||||||  ||||||| | |||||    
T  3577553 aagaggttatggtgtagacttatggaactacctaaaattcctagtgtagttggatgcaaggattgtcttcaagaaggcggaagacattccgatggttgaa 3577454  T
Q  150 gag 152  Q
    |||    
T  3577453 gag 3577451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 542
Target Start/End: Original strand, 10071446 - 10071505
Alignment:
Q  483 caaatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    |||| ||| ||||||| | |||||| ||||||| ||||||||||||||||||||||||||    
T  10071446 caaaacgtaacacgattttggaaaatgtgacacaattttgacagatctgaaacacgtttt 10071505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 20268441 - 20268524
Alignment:
Q  116 cttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaagg 199  Q
    ||||||||||||  |||| ||| | ||| |||||||||||||||||||||  |||||  ||||| ||||||||| |||||||||    
T  20268441 cttcaagagggcataaggaatttcaaaggttgaagaggtaaaggtgaaaaaatgtgggtctacatagtgttgttagatgcaagg 20268524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 14788330 - 14788204
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccgaagtttgaaga 151  Q
    |||| ||||||||| | ||||| |||||||||||||| || ||||| || |||| |||||||| |||| ||| ||||||||  ||||||| || |||||     
T  14788330 aagatgttatggtgaatgcttgtggaactacctaaaattcctagtgtagatggactgcaaggaccttcgagaaggcggaagacattccgaggtctgaagg 14788231  T
Q  152 ggtaaaggtgaaaagttgtggaactac 178  Q
    ||| ||||||   | ||||||||||||    
T  14788230 ggttaaggtgtgcacttgtggaactac 14788204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 16454838 - 16454963
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccgaagtttgaaga 151  Q
    ||||||||| |||| | | ||| |||||||||||||| |||||||| ||||||| |||||||| |||| ||| ||| ||||  ||||||| |  |||||     
T  16454838 aagaggttaaggtgaatgtttgtggaactacctaaaattcttagtgtagttggactgcaaggaccttcgagaaggcagaagacattccgatgactgaag- 16454936  T
Q  152 ggtaaaggtgaaaagttgtggaactac 178  Q
    ||| |||||||||| ||||||| ||||    
T  16454937 ggttaaggtgaaaacttgtggagctac 16454963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 34570797 - 34570759
Alignment:
Q  488 cgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  34570797 cgtgtcacgatttgggaaaacgtgacacgattttgacag 34570759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 3577846 - 3577785
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaatct-tagtgcagttggatgcaagga 114  Q
    ||||||||||||||||| || | ||||||||||| ||| | ||||| |||||||||||||||    
T  3577846 aagaggttatggtgtagactcgtggaactacctacaatttctagtgtagttggatgcaagga 3577785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 3792432 - 3792493
Alignment:
Q  340 ggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaa 401  Q
    |||||||||||||||||||   |||| ||  | |||||||||||||||||||| ||||||||    
T  3792432 ggtggttgatggttaaattgacatcaccactaatttagagtcaaggtggagaaatgttgaaa 3792493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 9175086 - 9174997
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccga 141  Q
    |||| ||||||||| | ||||| || ||||||||||| || ||||| ||||||| |||||||| |||| ||| |||||||| ||||||||    
T  9175086 aagatgttatggtgaatgcttgtgggactacctaaaattcctagtgtagttggactgcaaggaccttcgagaaggcggaagatattccga 9174997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 36920278 - 36920209
Alignment:
Q  109 caaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactac 178  Q
    |||||| |||||| ||||||||||| ||||||| | |||||||||| | |||| ||| ||||||| ||||    
T  36920278 caaggatcttcaaaagggcggaaggcattccgatggttgaagaggttagggtgtaaacttgtggagctac 36920209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 526
Target Start/End: Original strand, 37740416 - 37740449
Alignment:
Q  493 cacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||||| |||||||||||||||||||||||||||    
T  37740416 cacgatttgggaaaacgtgacacgattttgacag 37740449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 107 - 295
Target Start/End: Complemental strand, 6396379 - 6396189
Alignment:
Q  107 tgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaagga-----a 201  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||  |||||  |||| ||||||| ||||||||||||||     |    
T  6396379 tgcaaggatcttcaagagggcggaagatattccgaggtttgaagagataaaggtgaaagcttgtgagactataaagtgtagttggatgcaaggagaagaa 6396280  T
Q  202 taagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttgat 295  Q
    | ||||||||| |||||||| |||||||||  ||||| ||||||||||||||| || || | |||||||||||||||   | ||||||||||||    
T  6396279 tcagacttggatgcttgtgggactaccgag--tggttagatgcaagtggaggt-ggtgtgtagatcaaggttcaagcaaggatttggacttgat 6396189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 393 - 452
Target Start/End: Original strand, 7450754 - 7450813
Alignment:
Q  393 ttgttgaaatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgatttt 452  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7450754 ttgttgagatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgatttt 7450813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 432 - 527
Target Start/End: Original strand, 7450812 - 7450911
Alignment:
Q  432 ttggaatcgtgacacgattttcaaggccgtgaatgggtgtgctctggaattcaaat----cgtgacacgatatgggaaaacgtgacacgattttgacaga 527  Q
    |||| |||||| ||||||||| ||||||||||||||||||||||||||   |||||    ||||||||||| ||||||||||||||||||||||||||||    
T  7450812 ttgggatcgtggcacgatttttaaggccgtgaatgggtgtgctctggatgccaaattaatcgtgacacgatttgggaaaacgtgacacgattttgacaga 7450911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 542
Target Start/End: Complemental strand, 1632338 - 1632279
Alignment:
Q  483 caaatcgtgacacgatatgggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||| |||||||||||    
T  1632338 caaaacgtgacacgattttggaaaacgtgacacgattttgacagatctaaaacacgtttt 1632279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 30262488 - 30262388
Alignment:
Q  94 tagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaa--ggtgaaaagttgtggaactacaaagtgttgttgg 191  Q
    ||||| ||||||||||||||| |||||||  |||||||||||||| || | ||||||||| |||  |||| || ||||||||||||||  |||| |||||    
T  30262488 tagtgtagttggatgcaaggatcttcaagtaggcggaaggtattctgatggttgaagaggaaaaagggtggaaggttgtggaactacatggtgtagttgg 30262389  T
Q  192 a 192  Q
    |    
T  30262388 a 30262388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 42018400 - 42018319
Alignment:
Q  72 cttgcggaactacctaaaatcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagagg 153  Q
    |||| |||| ||||||||||| ||||| ||||||||||||||| ||||||||||  |||||  ||||||| | |||||||||    
T  42018400 cttgtggaaatacctaaaatcctagtgtagttggatgcaaggatcttcaagaggatggaagacattccgagggttgaagagg 42018319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 41303857 - 41303773
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaatcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattc 138  Q
    |||||| | |||||||  |||| ||||||||||||  |||||||| ||||||||||||||| ||| ||||||||| |||| ||||    
T  41303857 aagagggtttggtgtattcttgtggaactacctaagttcttagtgtagttggatgcaaggatctttaagagggcgaaaggcattc 41303773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 13829050 - 13828971
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaatct-tagtgcagttggatgcaaggaacttcaagagggcggaag 132  Q
    ||||||||||||||||  |||| ||||||| ||||||| | ||||| ||||||||||||| | |||||||| ||||||||    
T  13829050 aagaggttatggtgtatacttgtggaactaactaaaatttctagtgtagttggatgcaagaatcttcaagaaggcggaag 13828971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 21519158 - 21519039
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccgaagtttgaaga 151  Q
    ||||||||| |||| | ||||| |||||||||||||| || ||||| ||||||| |||||||| |||| ||| |||||||| |||||||| |  |||||     
T  21519158 aagaggttaaggtgaatgcttgtggaactacctaaaattcctagtgtagttggactgcaaggaccttcgagaaggcggaagatattccgatggctgaagg 21519059  T
Q  152 ggtaaaggtgaaaagttgtg 171  Q
    ||| |||||| ||| |||||    
T  21519058 ggttaaggtgtaaaattgtg 21519039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 37048096 - 37048021
Alignment:
Q  323 gcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttg 398  Q
    |||||| ||||||| | ||||||||||||||||| | | |||| |||   ||||||||||||||||||||||||||    
T  37048096 gcaagggtaaggagcaaggtggttgatggttaaagtggaatcaccattgatttagagtcaaggtggagaattgttg 37048021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 13828893 - 13828836
Alignment:
Q  338 atggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattg 395  Q
    |||||||||||||||||||||   |||||||  | |||||||||||||||||||||||    
T  13828893 atggtggttgatggttaaattgacatcatcacaaatttagagtcaaggtggagaattg 13828836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 16677158 - 16677221
Alignment:
Q  79 aactacct-aaaatcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccga 141  Q
    |||||||| ||||||| |||| ||||||||||||||| |||||||||| ||||||  |||||||    
T  16677158 aactacctcaaaatctgagtgtagttggatgcaaggatcttcaagaggacggaagacattccga 16677221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 401
Target Start/End: Complemental strand, 35892969 - 35892740
Alignment:
Q  176 tacaaagtgttgttggatgcaagga-----ataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaag 270  Q
    |||| ||||| ||||||||||||||     || ||||||||||||||| || ||| || ||| |||||| ||| || |||||||||| || | ||| ||     
T  35892969 tacatagtgtagttggatgcaaggataaggatcagacttggaagcttgagggactcccaaggatggttgaatgtaa-tggaggtcggtgtctcgatgaat 35892871  T
Q  271 gttcaagcggagctttggacttgattggttttgtcttgagggattgttcaaggc-aaggataaggagaatggtggttgatggttaaattagtatcatcat 369  Q
    ||| |||||| |||    ||||||| ||||||||||||| |  | ||| ||| | |||| ||| ||||| ||||||||||||||||| |   ||||||||    
T  35892870 gtttaagcggggctcaa-acttgatcggttttgtcttgaagagtagtttaagacaaaggttaacgagaaaggtggttgatggttaaagtgacatcatcat 35892772  T
Q  370 cattttagagtcaaggtggagaattgttgaaa 401  Q
    |  |||  || |||||||||||||||||||||    
T  35892771 cggtttgaaggcaaggtggagaattgttgaaa 35892740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 401
Target Start/End: Complemental strand, 31056751 - 31056685
Alignment:
Q  335 agaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaa 401  Q
    |||| ||||||||||| |||||||   |||| || || |||||||||||||||||||| ||||||||    
T  31056751 agaaaggtggttgatgattaaattgacatcaccaccaatttagagtcaaggtggagaaatgttgaaa 31056685  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 22405251 - 22405142
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccgaagtttgaaga 151  Q
    |||| ||||||||| | ||||| |||||||||||||| || ||||| ||||||| | |||||| |||| ||| ||||||||  ||||||| |  ||||||    
T  22405251 aagatgttatggtgaatgcttgtggaactacctaaaattcctagtgtagttggacttcaaggatcttcgagaaggcggaagccattccgatggctgaaga 22405152  T
Q  152 ggtaaaggtg 161  Q
    ||| ||||||    
T  22405151 ggttaaggtg 22405142  T

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Target: scaffold0288 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 54 - 358
Target Start/End: Original strand, 16865 - 17184
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagag 152  Q
    ||||||||||||||||| ||||   || ||||||||| |||||||| |||| ||| |||||| ||||||||| ||  |||| ||||  | ||||||| ||    
T  16865 aagaggttatggtgtagacttgtacaattacctaaaaatcttagtgtagtttgatacaaggatcttcaagagcgccaaaggcattcttaggtttgaaaag 16964  T
Q  153 gtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaagga-----ataagacttggaagcttgtggaactaccgagggtggttggatgcaag 247  Q
    |||| |||||||  |||| | |||||||||| | ||||||||||||||     || ||||||||||||||||||||||||  ||| | ||||||||||||    
T  16965 gtaagggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaag 17064  T
Q  248 tg----------gaggtcggagtatggatcaaggttcaagcggagctttggacttgattggttttgtcttgagggattgttcaaggcaaggataaggaga 337  Q
    ||          |||||||| |  | |||||||||||| | | |  ||| |||||||||| |||||||||||  || |  ||||||||||| || ||||     
T  17065 tgctacccagtggaggtcggtgagtagatcaaggttcacgtgaatatttagacttgattgattttgtcttga-agagtagtcaaggcaaggttatggagc 17163  T
Q  338 atggtggttgatggttaaatt 358  Q
    | |||||||||||||||||||    
T  17164 aaggtggttgatggttaaatt 17184  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 485 - 542
Target Start/End: Original strand, 213031 - 213089
Alignment:
Q  485 aatcgtgacacgatat-gggaaaacgtgacacgattttgacagatctgaaacacgtttt 542  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  213031 aatcgtgacacgattttgggaaaacgtgacacgattttgacagatctgaaacacgtttt 213089  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 294
Target Start/End: Original strand, 34700843 - 34701040
Alignment:
Q  102 ttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgcaagga- 200  Q
    ||||||||||| | |||  ||||||  ||||| ||||  ||| || |||||||||| ||||||  ||||  ||||||||| ||| |||| |||||||||     
T  34700843 ttggatgcaagaatcttttagagggttgaaggcattcttaaggttaaagaggtaaatgtgaaagcttgtctaactacaaattgtagttgcatgcaaggag 34700942  T
Q  201 ----ataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttga 294  Q
        || |||||||||||||| ||  |||| ||| | ||||||||||| |||||||| |||  | | ||||||||||||||||| |||||| ||||||    
T  34700943 aaggatcagacttggaagcttctgagactatcgatgttggttggatgctagtggaggccggtctcttgatcaaggttcaagcggggctttgaacttga 34701040  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 399
Target Start/End: Original strand, 8037773 - 8038075
Alignment:
Q  100 agttggatgcaaggaacttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgttgttggatgca--- 196  Q
    |||||||||||||||  ||||||||| | ||||| ||||  | | |||| |||||||||||||||  |||||| |||||||||||  ||||||||||       
T  8037773 agttggatgcaaggatattcaagaggacagaaggcattctaagggttga-gaggtaaaggtgaaagcttgtgggactacaaagtgcagttggatgcaaag 8037871  T
Q  197 --aggaataagacttggaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggacttga 294  Q
      | |||| |||| | |||| |||||  ||||   |  |||||||||||||||| || ||||  || | ||||||| ||||||||  | |||| ||||||    
T  8037872 agaagaatcagacgtcgaagtttgtgagactattcaatgtggttggatgcaagtagaagtcgatgtgttgatcaagattcaagcgaggatttgaacttga 8037971  T
Q  295 ttggttttgtcttgagggattgttcaaggcaaggataaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaatt 394  Q
    ||| ||||||||| |||  | ||||||| ||||| |||| || |  ||| ||||||||||||||   ||| |||  | |||| ||||||||| |||||||    
T  8037972 ttgattttgtcttaaggagtagttcaagtcaaggttaagaaggaatgtgtttgatggttaaattgacatcgtcactaattta-agtcaaggtagagaatt 8038070  T
Q  395 gttga 399  Q
    |||||    
T  8038071 gttga 8038075  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 659498 - 659624
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccgaagtttgaaga 151  Q
    ||||||||| |||| | ||||| |||||||||||||| || ||||| ||||||| |||||||| |||| ||| ||||||||  ||||||| | ||||||     
T  659498 aagaggttaaggtgaatgcttgtggaactacctaaaattcctagtgtagttggactgcaaggaccttcgagaaggcggaagacattccgatggttgaagg 659597  T
Q  152 ggtaaaggtgaaaagttgtggaactac 178  Q
    ||| |||||| ||| ||||||| ||||    
T  659598 ggttaaggtgtaaacttgtggagctac 659624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 520631 - 520710
Alignment:
Q  211 gaagcttgtggaactaccgagggtggttggatgcaagtggaggtcggagtatggatcaaggttcaagcggagctttggac 290  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||   || |  |||||||||| ||||| |||||||||    
T  520631 gaagcttgtggaactagcgagggtgattggatgcaagtgaaggtcaacgtctaaatcaaggttcgagcggggctttggac 520710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 533554 - 533592
Alignment:
Q  488 cgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  533554 cgtgtcacgatttgggaaaacgtgacacgattttgacag 533592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 13487743 - 13487797
Alignment:
Q  339 tggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaat 393  Q
    |||||||||||||||||| | | |||||||||| |||  ||||||||||||||||    
T  13487743 tggtggttgatggttaaagtggcatcatcatcaatttgaagtcaaggtggagaat 13487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 18510056 - 18509994
Alignment:
Q  116 cttcaagagggcggaaggtattccgaagtttgaagaggtaaaggtgaaaagttgtggaactac 178  Q
    |||||| ||||||||||| ||||||| | |||||||||| |||||| ||| ||||||| ||||    
T  18510056 cttcaaaagggcggaaggcattccgatggttgaagaggttaaggtgtaaacttgtggagctac 18509994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 28751039 - 28751001
Alignment:
Q  488 cgtgacacgatatgggaaaacgtgacacgattttgacag 526  Q
    |||||||| || |||||||||||||||||||||||||||    
T  28751039 cgtgacacaatttgggaaaacgtgacacgattttgacag 28751001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 29139705 - 29139747
Alignment:
Q  143 gtttgaagaggtaaaggtgaaaagttgtggaactacaaagtgt 185  Q
    ||||||||||||||| ||||||  |||||||||||||||||||    
T  29139705 gtttgaagaggtaaatgtgaaatcttgtggaactacaaagtgt 29139747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 20504763 - 20504654
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccgaagtttgaaga 151  Q
    |||||||||||||| | ||||| |||||||||||||| || ||||| ||||||| |||||||| |||| ||| || |||||  |||| || |  ||||||    
T  20504763 aagaggttatggtgaatgcttgtggaactacctaaaattcctagtgtagttggactgcaaggaccttcgagaaggaggaagacattctgatggctgaaga 20504664  T
Q  152 ggtaaaggtg 161  Q
    ||| ||||||    
T  20504663 ggttaaggtg 20504654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 31544397 - 31544486
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccga 141  Q
    |||| ||||||||| | ||||| || ||||||||||| || ||||| ||||||| |||||||| |||| ||| |||||||| ||||||||    
T  31544397 aagatgttatggtgaaagcttgtgggactacctaaaactcctagtgtagttggactgcaaggaccttcgagaaggcggaagatattccga 31544486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 41586904 - 41586815
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccga 141  Q
    |||| ||||||||| | ||||| |||||||||||||| || ||||| ||||||| |||||||| |||| ||| ||||||||  |||||||    
T  41586904 aagatgttatggtgaatgcttgtggaactacctaaaattcctagtgtagttggactgcaaggaccttcgagaaggcggaagacattccga 41586815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 22828727 - 22828779
Alignment:
Q  340 ggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaa 392  Q
    ||||||||||||||||||||  || |||  || ||||||||||||||||||||    
T  22828727 ggtggttgatggttaaattaacattatcgccaatttagagtcaaggtggagaa 22828779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 402
Target Start/End: Complemental strand, 25785340 - 25785280
Alignment:
Q  342 tggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgaaat 402  Q
    ||||||||||||||||| | |||| ||  | |||||||||||||||||||| |||| ||||    
T  25785340 tggttgatggttaaatttgcatcaccactaatttagagtcaaggtggagaaatgttaaaat 25785280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 519
Target Start/End: Complemental strand, 43592671 - 43592635
Alignment:
Q  483 caaatcgtgacacgatatgggaaaacgtgacacgatt 519  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  43592671 caaatcgtgacacgatttgggaaatcgtgacacgatt 43592635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 519
Target Start/End: Complemental strand, 43599116 - 43599080
Alignment:
Q  483 caaatcgtgacacgatatgggaaaacgtgacacgatt 519  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  43599116 caaatcgtgacacgatttgggaaatcgtgacacgatt 43599080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 519
Target Start/End: Complemental strand, 43604608 - 43604572
Alignment:
Q  483 caaatcgtgacacgatatgggaaaacgtgacacgatt 519  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  43604608 caaatcgtgacacgatttgggaaatcgtgacacgatt 43604572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 519
Target Start/End: Complemental strand, 43610100 - 43610064
Alignment:
Q  483 caaatcgtgacacgatatgggaaaacgtgacacgatt 519  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  43610100 caaatcgtgacacgatttgggaaatcgtgacacgatt 43610064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 51400 - 51526
Alignment:
Q  54 aagaggttatggtgtaggcttgcggaactacctaaaa-tcttagtgcagttgga-tgcaaggaacttcaagagggcggaaggtattccgaagtttgaaga 151  Q
    |||| ||||||||| | ||||| |||||||||||||| || ||||| || |||| |||||||| |||| ||| ||||||||  ||||||| || |||||     
T  51400 aagatgttatggtgaatgcttgtggaactacctaaaattcctagtgtagatggactgcaaggaccttcgagaaggcggaagacattccgaggtctgaagg 51499  T
Q  152 ggtaaaggtgaaaagttgtggaactac 178  Q
    ||| ||||||   | ||||||||||||    
T  51500 ggttaaggtgtgcacttgtggaactac 51526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 520
Target Start/End: Complemental strand, 11645 - 11608
Alignment:
Q  483 caaatcgtgacacgatatgggaaaacgtgacacgattt 520  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  11645 caaatcgtgacacgatttgggaaatcgtgacacgattt 11608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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