View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_7 (Length: 488)
Name: NF5951_low_7
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 37 - 473
Target Start/End: Original strand, 49539491 - 49539927
Alignment:
| Q |
37 |
tgtacaagcaatgattacttaattatttttaattaataatattatataacatttcgtgaaagttcaaagttatttatccaatctgatgaacaccctactc |
136 |
Q |
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| T |
49539491 |
tgtacaagcaatgattacttaattatttttaattaataatattatataacatttcgtgaaagctcaaagttatttatccaatctgatgaacaccctactc |
49539590 |
T |
|
| Q |
137 |
ctgcatgatcaacacacacttacaaacacaaagattagtcgtttaggttagttaattagtaatactatttgattattattatcatggtaaaatttcggcc |
236 |
Q |
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| T |
49539591 |
ctgcttgatcaacacacacttacaaacacaaagattagtcgtttaggttagttaattagtaatactatttgattattattatcatggtaaaatttcggcc |
49539690 |
T |
|
| Q |
237 |
agcattaaccatgccataattgttatcttctcactttaccgccatgcctaagattaagacaaatggatcttagtggaatcaacttcctaaagtaaatatc |
336 |
Q |
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| T |
49539691 |
agcattaaccatgccataattgttatcttctcactttaccgccatgcctaagattaagacaaatggatcttagtggaatcaacttcctaaagtaaatatc |
49539790 |
T |
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| Q |
337 |
atccgaaaatgatattataattggaagtaaacttagaacttagcgaacttttaattgattcaacaagtagatacatagtaagatggtatacacatgtgtg |
436 |
Q |
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| T |
49539791 |
atccgaaaatgatattataattggaagtaaacttagaacttagcaaacttttaattgattcaacaagtagatacatagtaagatggtatacacatgtgtg |
49539890 |
T |
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| Q |
437 |
atcactccgaataagtgtggtatccactctcattttt |
473 |
Q |
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| T |
49539891 |
atcactccgaataagtgtggtatccactctcattttt |
49539927 |
T |
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