View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5951_low_8 (Length: 483)

Name: NF5951_low_8
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5951_low_8
NF5951_low_8
[»] chr7 (8 HSPs)
chr7 (17-466)||(33426221-33426670)
chr7 (248-466)||(47815443-47815661)
chr7 (248-466)||(32248876-32249094)
chr7 (271-438)||(37504304-37504471)
chr7 (143-183)||(35079583-35079624)
chr7 (143-183)||(35093712-35093753)
chr7 (143-183)||(35096960-35097001)
chr7 (143-183)||(35070924-35070965)
[»] chr1 (4 HSPs)
chr1 (248-438)||(28851115-28851305)
chr1 (248-457)||(2170131-2170339)
chr1 (249-466)||(39482652-39482868)
chr1 (294-402)||(6843977-6844085)
[»] chr6 (1 HSPs)
chr6 (249-466)||(10460836-10461053)
[»] chr8 (5 HSPs)
chr8 (255-431)||(11659330-11659506)
chr8 (249-431)||(11668493-11668675)
chr8 (255-466)||(31372093-31372303)
chr8 (149-177)||(6234800-6234828)
chr8 (146-182)||(9014921-9014957)
[»] chr2 (3 HSPs)
chr2 (265-402)||(4867909-4868046)
chr2 (285-391)||(18751532-18751638)
chr2 (146-182)||(33133649-33133685)
[»] chr4 (2 HSPs)
chr4 (248-307)||(53239122-53239181)
chr4 (410-457)||(53239177-53239224)
[»] scaffold0013 (1 HSPs)
scaffold0013 (146-182)||(97058-97094)
[»] chr5 (2 HSPs)
chr5 (146-183)||(9666204-9666242)
chr5 (149-177)||(42422655-42422683)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 33426221 - 33426670
Alignment:
Q  17 atcaaaacatgctattttctttaaacagtatagatatcgataaattaaaactatatatacattagtggcttgtaacaaagtcttccctaaataaaatgta 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33426221 atcaaaacatgctattttctttaaacagtatagatatagataaattaaaactatatatacattagtggcttgtaacaaagtcttccctaaaaaaaatgta 33426320  T
Q  117 aaaactcaacaaacaattannnnnnnaacgacaacaataatataacaaatgtaacaaaattcttatcnnnnnnnagtaaacaatataaacataacaatac 216  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||        ||||| ||||||||||||||||||||    
T  33426321 aaaactcaacaaacaattatttttttaacgacaacaataatataacaaatgtaccaaaattcttat--ttttttagtaa-caatataaacataacaatac 33426417  T
Q  217 tcacaaatctatatatata--ggctcattcta-tgtacagccatatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcat 313  Q
    |||||||||||||||||||  ||||| ||||| |||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  33426418 tcacaaatctatatatatataggctccttctactgtacacccatatatttgtatgtatcaatactccaaactaaaatggtcaatagttttttgacagcat 33426517  T
Q  314 ggaacaagtaagtttgactggattatagaattagcaccaccaaacttatgagttttacactttagggcttttattttatgatataattaattttactttg 413  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33426518 ggaacaagtaagtttgattggattatagaattagcaccaccaaacttgtgagttttacactttggggcttttattttatgatataattaattttactttg 33426617  T
Q  414 atttaacagaaaacaaatttaaatcagtacttcttcttcttcatggcagttct 466  Q
    |||||||| ||||||| |||||||   ||||||||||||||||||||||||||    
T  33426618 atttaacataaaacaagtttaaattgttacttcttcttcttcatggcagttct 33426670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 248 - 466
Target Start/End: Complemental strand, 47815661 - 47815443
Alignment:
Q  248 gtacagccatatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattag 347  Q
    ||||| ||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  47815661 gtacacccatatatttgtatgtaacaatactccaaactaaaatggccaatagttttttgacaacatggaacaaataagtttgactgaattatagaattag 47815562  T
Q  348 caccaccaaacttatgagttttacactttagggcttttattttatgatataattaattttactttgatttaacagaaaacaaatttaaatcagtacttct 447  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  47815561 caccaccaaacctatgagttttacactttggagcttttattttatgatataattaattttactttgatttaacagaaaacaaatttaaatcgttacttct 47815462  T
Q  448 tcttcttcatggcagttct 466  Q
    |||||||||||||||||||    
T  47815461 tcttcttcatggcagttct 47815443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 248 - 466
Target Start/End: Complemental strand, 32249094 - 32248876
Alignment:
Q  248 gtacagccatatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattag 347  Q
    ||||| |||||||||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32249094 gtacacccatatatttgtatgtaccaatactccaaattaaaatgaccaatagttttttgatagcatggaacaagtaagtttgactggattatagaattag 32248995  T
Q  348 caccaccaaacttatgagttttacactttagggcttttattttatgatataattaattttactttgatttaacagaaaacaaatttaaatcagtacttct 447  Q
    ||||||||||||| ||| |||| |||||| || |||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||  |||||||    
T  32248994 caccaccaaacttgtgaattttgcactttgggacttttattttatgatataattaattttaatttgatttaaaagaaaataaatttaaatcgttacttct 32248895  T
Q  448 tcttcttcatggcagttct 466  Q
    ||| ||| |||||| ||||    
T  32248894 tctcctttatggcaattct 32248876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 271 - 438
Target Start/End: Complemental strand, 37504471 - 37504304
Alignment:
Q  271 ccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattagcaccaccaaacttatgagtttta 370  Q
    ||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||     
T  37504471 ccaatactccaaattaaaatgacgaatagttttttgacagcatggaacaagtaagtttgagtagattatagaattagcaccaccaaacttgtgagttttg 37504372  T
Q  371 cactttagggcttttattttatgatataattaattttactttgatttaacagaaaacaaatttaaatc 438  Q
    ||||||  ||||||||||||||||||||||| |||||| |||||||||| ||| || |||||| ||||    
T  37504371 cactttgaggcttttattttatgatataattcattttaatttgatttaatagataataaatttcaatc 37504304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 35079583 - 35079624
Alignment:
Q  143 aacgacaacaataatataacaaatgtaac-aaaattcttatc 183  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  35079583 aacgacaacaataatataacaaatgtaacaaaaattcttatc 35079624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 35093712 - 35093753
Alignment:
Q  143 aacgacaacaataatataacaaatgtaa-caaaattcttatc 183  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  35093712 aacgacaacaataatataacaaatgtaaccaaaattcttatc 35093753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 35096960 - 35097001
Alignment:
Q  143 aacgacaacaataatataacaaatgtaa-caaaattcttatc 183  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  35096960 aacgacaacaataatataacaaatgtaaccaaaattcttatc 35097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 35070924 - 35070965
Alignment:
Q  143 aacgacaacaataatataacaaatgtaa-caaaattcttatc 183  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  35070924 aacgacaacaataatataacaaatgtaaccaaaaatcttatc 35070965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 248 - 438
Target Start/End: Original strand, 28851115 - 28851305
Alignment:
Q  248 gtacagccatatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattag 347  Q
    ||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28851115 gtacacccatatatttgtatgtaccaatactctagactaaaatggccaatagttttttgacagcatggaacaagtaagtttgactggattatagaattag 28851214  T
Q  348 caccaccaaacttatgagttttacactttagggcttttattttatgatataattaattttactttgatttaacagaaaacaaatttaaatc 438  Q
    ||||||||||||| |||||||| |||||| | | ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  28851215 caccaccaaacttgtgagttttgcactttggagattttattttatgatataatcaattttaatttgatttaacagaaaacaaatttaaatc 28851305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 248 - 457
Target Start/End: Original strand, 2170131 - 2170339
Alignment:
Q  248 gtacagccatatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattag 347  Q
    ||||| ||||||||||||||||||||||||||  || ||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||    
T  2170131 gtacacccatatatttgtatgtaccaatactcctaactaaaatggtcaatagtttt-tgacagcatgcaacaagtaagtttgactgaattatagaattag 2170229  T
Q  348 caccaccaaacttatgagttttacactttagggcttttattttatgatataattaattttactttgatttaacagaaaacaaatttaaatcagtacttct 447  Q
    ||||||||||||| |||||||| |||||| |  |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||  ||||||     
T  2170230 caccaccaaacttgtgagttttgcactttggaacttttattttatgatataattaattttaatttgatttaacaggaaacaaatttaaatcgttacttcc 2170329  T
Q  448 tcttcttcat 457  Q
    ||| ||||||    
T  2170330 tctccttcat 2170339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 249 - 466
Target Start/End: Complemental strand, 39482868 - 39482652
Alignment:
Q  249 tacagccatatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattagc 348  Q
    |||| ||||| |||||||| || |||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  39482868 tacatccatacatttgtatatatcaatacttcaaattaaaatggtcaatagttttttgacagcatgaaacaagtaagtttgactcgattatagaattagc 39482769  T
Q  349 accaccaaacttatgagttttacactttagggcttttattttatgatataattaattttactttgatttaacagaaaacaaatttaaatcagtacttctt 448  Q
    |||| ||||||| ||| |||| ||||||  |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||  ||| ||||    
T  39482768 accatcaaacttgtgaattttgcactttgaggcttttattttatgatataattaattttaattcgatttaaaagaaaacaaatttaaatcgttac-tctt 39482670  T
Q  449 cttcttcatggcagttct 466  Q
    || ||| |||||||||||    
T  39482669 ctcctttatggcagttct 39482652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 294 - 402
Target Start/End: Complemental strand, 6844085 - 6843977
Alignment:
Q  294 caatagttttttgacagcatggaacaagtaagtttgactggattatagaattagcaccaccaaacttatgagttttacactttagggcttttattttatg 393  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||| ||| |||| ||||||  | |||||||||||||    
T  6844085 caatagttttctgacagcatggaacaagtaagtttgactggattgcagatttagcactaccaaacttgtgaattttgcactttgagacttttattttatg 6843986  T
Q  394 atataatta 402  Q
    |||||||||    
T  6843985 atataatta 6843977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 249 - 466
Target Start/End: Original strand, 10460836 - 10461053
Alignment:
Q  249 tacagccatatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattagc 348  Q
    |||| ||||||||||||||||| ||||| || ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10460836 tacacccatatatttgtatgtatcaatattccaaactaaaatggccaatagttttttgacagcatggaacaagtaagtttgactggattatagaattagc 10460935  T
Q  349 accaccaaacttatgagttttacactttagggcttttattttatgatataattaattttactttgatttaacagaaaac-aaatttaaatcagtacttct 447  Q
    |||||||||||| ||| |||| |||||| |||||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||||||  |||||||    
T  10460936 accaccaaacttgtgaattttgcactttggggcttttattttatgatataattaa-tttaatttgatttaaaagaaaacaaaatttaaatcgttacttct 10461034  T
Q  448 tcttcttcatggcagttct 466  Q
    ||| ||| |||||||||||    
T  10461035 tctcctttatggcagttct 10461053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 255 - 431
Target Start/End: Original strand, 11659330 - 11659506
Alignment:
Q  255 catatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattagcaccacc 354  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11659330 catatatttgtatgtaccaatactccaaattaaaatggtcaatagatttttgacagcatggaacaagtaagtatgactggattatagaattagcaccacc 11659429  T
Q  355 aaacttatgagttttacactttagggcttttattttatgatataattaattttactttgatttaacagaaaacaaat 431  Q
    |||||| |||||||| || ||| ||| ||||||| |||| |||||||||||||| ||||||| ||||||||||||||    
T  11659430 aaacttgtgagttttgcattttggggtttttattgtatggtataattaattttaatttgattaaacagaaaacaaat 11659506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 249 - 431
Target Start/End: Original strand, 11668493 - 11668675
Alignment:
Q  249 tacagccatatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattagc 348  Q
    |||| |||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  11668493 tacacccatatatttgtatgtaccaatactccaaattaaaatggccaatagatttttgacagcatagaacaagtaagtatgactggattatagaattagc 11668592  T
Q  349 accaccaaacttatgagttttacactttagggcttttattttatgatataattaattttactttgatttaacagaaaacaaat 431  Q
    ||||||| |||| |||||||| || ||| |||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  11668593 accaccagacttgtgagttttgcattttggggcttttattttatggtataattaattttaatttgattaaacagaaaacaaat 11668675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 255 - 466
Target Start/End: Complemental strand, 31372303 - 31372093
Alignment:
Q  255 catatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattagcaccacc 354  Q
    ||||||||||||||||||||||||  ||| |||||||| |||||||||||| |||| |||||||||||||||||||  ||||||||||||||||||||||    
T  31372303 catatatttgtatgtaccaatacttcaaactaaaatggccaatagttttttaacag-atggaacaagtaagtttgataggattatagaattagcaccacc 31372205  T
Q  355 aaacttatgagttttacactttagggcttttattttatgatataattaattttactttgatttaacagaaaacaaatttaaatcagtacttcttcttctt 454  Q
    ||| || ||| |||| ||||||   ||||||||||||||||||||||||||||  ||| |||||||| ||| |||||||||||   |||||||||| |||    
T  31372204 aaatttgtgaatttttcactttgaagcttttattttatgatataattaattttcatttaatttaacaaaaaccaaatttaaattgttacttcttctcctt 31372105  T
Q  455 catggcagttct 466  Q
    |||||| |||||    
T  31372104 catggcggttct 31372093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 6234828 - 6234800
Alignment:
Q  149 aacaataatataacaaatgtaacaaaatt 177  Q
    |||||||||||||||||||||||||||||    
T  6234828 aacaataatataacaaatgtaacaaaatt 6234800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 9014921 - 9014957
Alignment:
Q  146 gacaacaataatataacaaatgtaacaaaattcttat 182  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  9014921 gacaacaataatataacaaatataactaaattcttat 9014957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 402
Target Start/End: Complemental strand, 4868046 - 4867909
Alignment:
Q  265 tatgtaccaatactctaaattaaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattagcaccaccaaacttatga 364  Q
    |||||||| |||||| |||  ||||||  |||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||    
T  4868046 tatgtaccgatactccaaaccaaaatgaccaatagttttctgacagtatggaacaagtaagtttgactggattgtagatttagcaccaccaaacttgtga 4867947  T
Q  365 gttttacactttagggcttttattttatgatataatta 402  Q
     |||| || |||  | ||||||||||||||||||||||    
T  4867946 attttgcattttgagacttttattttatgatataatta 4867909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 285 - 391
Target Start/End: Complemental strand, 18751638 - 18751532
Alignment:
Q  285 taaaatggtcaatagttttttgacagcatggaacaagtaagtttgactggattatagaattagcaccaccaaacttatgagttttacactttagggcttt 384  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||||| || | ||||||||||||||||| ||||||||  ||||| |||||||    
T  18751638 taaaatggccaatagttttttgacagcatggaacaaaaaagtttgactggattgtaaatttagcaccaccaaacttgtgagttttgtactttggggcttt 18751539  T
Q  385 tatttta 391  Q
    |||||||    
T  18751538 tatttta 18751532  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 33133649 - 33133685
Alignment:
Q  146 gacaacaataatataacaaatgtaacaaaattcttat 182  Q
    ||||||||||||||||||||| |||||||||||||||    
T  33133649 gacaacaataatataacaaatataacaaaattcttat 33133685  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 53239122 - 53239181
Alignment:
Q  248 gtacagccatatatttgtatgtaccaatactctaaattaaaatggtcaatagttttttga 307  Q
    ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  53239122 gtacacccatatatttgtatgtaccaatactccaaactaaaatggtcaatagttttttga 53239181  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 53239177 - 53239224
Alignment:
Q  410 tttgatttaacagaaaacaaatttaaatcagtacttcttcttcttcat 457  Q
    |||||||||||||||||||||||||||||| |||||| ||| ||||||    
T  53239177 tttgatttaacagaaaacaaatttaaatcattacttcctctccttcat 53239224  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 97094 - 97058
Alignment:
Q  146 gacaacaataatataacaaatgtaacaaaattcttat 182  Q
    ||||||||||||||||||||| |||||||||||||||    
T  97094 gacaacaataatataacaaatataacaaaattcttat 97058  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 9666242 - 9666204
Alignment:
Q  146 gacaacaataatataacaaatgtaac-aaaattcttatc 183  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  9666242 gacaacaataatataacaaatgtaacaaaaattcttatc 9666204  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 42422655 - 42422683
Alignment:
Q  149 aacaataatataacaaatgtaacaaaatt 177  Q
    |||||||||||||||||||||||||||||    
T  42422655 aacaataatataacaaatgtaacaaaatt 42422683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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