View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5951_low_9 (Length: 462)
Name: NF5951_low_9
Description: NF5951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5951_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 9101865 - 9102197
Alignment:
| Q |
18 |
actatcatggttatttagttgaagagtatagtcctcacaaccgtgagatttcactattgtatttagataaccttttccaatcttccctcacaccttatat |
117 |
Q |
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| T |
9101865 |
actatcatggttatttagttgaagagtatagtcctcacaaccgtgagatttcactattgtatttagataaccttttccaatcttccctcacaccttatat |
9101964 |
T |
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| Q |
118 |
cactctttttcttacaccttagtttatcatagccttttcagactactaacactactatcacttaatccttttttacaacctaaataagtttaaaggcgtt |
217 |
Q |
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| T |
9101965 |
cactctttttcttacaccttagtttatcatagccttttcagactactaacactactatcacttaatccttttttacaacctaaataagattaaaggcgtt |
9102064 |
T |
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| Q |
218 |
tt---nnnnnnnnnnnnctgataggagtttgactatgatctcaattagtgtattttgtgtatgattctaaattacactttgaatgatgttaaaacatcta |
314 |
Q |
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| T |
9102065 |
ttaaaaaaaaaaaaaaactgataggagtttgactatgatctcaattagtgtattttgtgtatgattctaaattacactttgaatgatgttaaaacatcta |
9102164 |
T |
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| Q |
315 |
tactatacgagcgaaaagacagaaactcccaaa |
347 |
Q |
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| T |
9102165 |
tactatacgagcgaaaagatagaaacttccaaa |
9102197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 9110957 - 9110887
Alignment:
| Q |
244 |
tgactatgatctcaattagtgtattttgtgtatgattctaaattacactttgaatgatgttaaaacatcta |
314 |
Q |
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| T |
9110957 |
tgaccatgatctcaattagtgtagcgtgtctataattctaaattacactttgaatgatgttaaaacatcta |
9110887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 450
Target Start/End: Original strand, 9102311 - 9102340
Alignment:
| Q |
421 |
caatctatttatattttcttgtttggcctt |
450 |
Q |
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| T |
9102311 |
caatctatttatattttcttgtttggcctt |
9102340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 9083500 - 9083544
Alignment:
| Q |
42 |
agtatagtcctcacaaccgtgagatttcactattgtatttagata |
86 |
Q |
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| T |
9083500 |
agtatagtcttcgcaactgtgagatttcactatagtatttagata |
9083544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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