View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5952_high_5 (Length: 364)
Name: NF5952_high_5
Description: NF5952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5952_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 16287112 - 16286946
Alignment:
| Q |
2 |
tcaaagttggctttggagagatttgaccctcatactctcataataattgaatcaaacaactcgagtttaaaataaatcttatctcctattctttcctggt |
101 |
Q |
| |
|
|||||||| | ||||||| ||||| |||||| | | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |
|
|
| T |
16287112 |
tcaaagtttgttttggagggattttaccctcttcccctcttaataattgaatcaaacaactcgagtttaaaataaatctta--tcctattccatcctagt |
16287015 |
T |
|
| Q |
102 |
ggaaaacaaactaacnnnnnnncatattcaaaaacaacgacaccgtgctttatcactttcaaaaattctt |
171 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16287014 |
ggaaaacaaactaac-aaaaaacattttcaaaaacaacgacaccgtgctttatcactttaaaaaattctt |
16286946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 16286930 - 16286826
Alignment:
| Q |
156 |
actttcaaaaattcttaaaatgcctgatctatttttaaatattatnnnnnnn--ttagtgaaaataatcttgaattcatattctcgtatatttattaatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16286930 |
actttcaaaaattcttaaaatgcctgatctatttttaaatattataaaaaaaaattagtgaaaataatcttgaattcatattctcgtatatttattaatt |
16286831 |
T |
|
| Q |
254 |
aatgt |
258 |
Q |
| |
|
||||| |
|
|
| T |
16286830 |
aatgt |
16286826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 16286797 - 16286729
Alignment:
| Q |
287 |
ctctaatattaaaagaatattgacaagttcttatgaacctaatccattacggtagctttccctctctgc |
355 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16286797 |
ctctaatattaaaagaatattcacaagttctgatgaacctaatccattacggtagctttccctctctgc |
16286729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16288199 - 16288108
Alignment:
| Q |
1 |
ctcaaagttggctttggagagatttgaccctcatactctcataataattgaatcaaacaactcgagtttaaaataaatcttatctcctattc |
92 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| | ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
16288199 |
ctcaaagttggctttggagggattttcccctcttcctctcttaataattgaatcaaacaagtcaagtttaaaataaatcttatctcctattc |
16288108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University