View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5952_low_1 (Length: 641)

Name: NF5952_low_1
Description: NF5952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5952_low_1
NF5952_low_1
[»] chr1 (8 HSPs)
chr1 (87-623)||(51806377-51806901)
chr1 (110-230)||(24117065-24117185)
chr1 (166-230)||(18337529-18337593)
chr1 (186-234)||(23528710-23528758)
chr1 (166-229)||(16417368-16417431)
chr1 (265-352)||(42947851-42947938)
chr1 (321-355)||(43034333-43034367)
chr1 (186-230)||(12003187-12003231)
[»] chr4 (9 HSPs)
chr4 (123-229)||(18459672-18459778)
chr4 (123-230)||(10394568-10394675)
chr4 (110-203)||(7452504-7452597)
chr4 (142-238)||(610573-610669)
chr4 (110-207)||(4156844-4156940)
chr4 (305-348)||(37951637-37951680)
chr4 (177-238)||(5884466-5884527)
chr4 (124-205)||(46664331-46664412)
chr4 (174-230)||(24719575-24719631)
[»] scaffold0036 (1 HSPs)
scaffold0036 (110-230)||(37118-37237)
[»] chr8 (8 HSPs)
chr8 (1-74)||(29307962-29308035)
chr8 (176-230)||(15761456-15761510)
chr8 (173-238)||(17788320-17788385)
chr8 (147-226)||(26879169-26879250)
chr8 (177-234)||(1018280-1018337)
chr8 (110-171)||(16751932-16751992)
chr8 (185-226)||(32424394-32424435)
chr8 (186-230)||(3094280-3094324)
[»] chr2 (6 HSPs)
chr2 (124-234)||(5395613-5395723)
chr2 (1-72)||(32399687-32399757)
chr2 (124-220)||(8428210-8428306)
chr2 (174-229)||(31023282-31023337)
chr2 (110-170)||(19257479-19257539)
chr2 (42-74)||(44553235-44553267)
[»] scaffold0048 (1 HSPs)
scaffold0048 (110-230)||(61334-61454)
[»] chr7 (5 HSPs)
chr7 (166-237)||(4574563-4574634)
chr7 (203-238)||(4574521-4574556)
chr7 (186-236)||(44944872-44944922)
chr7 (110-227)||(21157725-21157842)
chr7 (166-226)||(26565635-26565695)
[»] chr6 (5 HSPs)
chr6 (171-234)||(4597163-4597226)
chr6 (123-230)||(4841883-4841990)
chr6 (113-223)||(12245174-12245284)
chr6 (202-238)||(1178799-1178835)
chr6 (42-74)||(19750169-19750201)
[»] chr3 (13 HSPs)
chr3 (124-179)||(3041189-3041244)
chr3 (124-171)||(22970725-22970772)
chr3 (166-220)||(28135790-28135844)
chr3 (174-230)||(10872961-10873017)
chr3 (304-351)||(39432734-39432781)
chr3 (188-234)||(17796431-17796477)
chr3 (188-234)||(19104871-19104917)
chr3 (26-72)||(33771592-33771638)
chr3 (124-164)||(15806482-15806522)
chr3 (174-230)||(15806521-15806577)
chr3 (123-159)||(17796605-17796641)
chr3 (123-159)||(19105045-19105081)
chr3 (124-228)||(26234879-26234983)
[»] chr5 (3 HSPs)
chr5 (125-183)||(15445849-15445907)
chr5 (136-205)||(13350037-13350106)
chr5 (110-171)||(4289918-4289979)
[»] scaffold0182 (1 HSPs)
scaffold0182 (113-171)||(24299-24357)
[»] scaffold0684 (1 HSPs)
scaffold0684 (110-171)||(5562-5623)


Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 87 - 623
Target Start/End: Original strand, 51806377 - 51806901
Alignment:
Q  87 ttataattataattaactccatacttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||                   ||| ||||||||||||||||||||| |    
T  51806377 ttataattataattaactccatacttcaaaatcccataaaaccctgcaattttg-------------------tgcaactttgatgtgattttactagga 51806457  T
Q  187 ttttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagtaa-gattttgaca----acaatgaatattataaccatgatttgttgtgca 281  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  |  | |    ||| |||||||||||||||||||||||| ||||    
T  51806458 ttttgcctattttgggattctgcaatgaatttgaatcgttgaagatgagtaaagacataaatactggacagtgaatattataaccatgatttgttatgca 51806557  T
Q  282 tgtgcacgtaatcacaatcatttatttgtttatcaacgcttgatattactcactttactctataaagtgaattgatgagtttctcattttagaatagcct 381  Q
    | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51806558 tttgcacgtaatgacaatcatttatttgtttatcaacggttgatattactcactttactctataaagtgaattgatgagtttctcattttagaatagcct 51806657  T
Q  382 tgcttattattattattgtaactaactaaaataagcaaaataaatttattaat---aataagtaatgaaaatcactagaatttcagtcatatacgttgga 478  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||    
T  51806658 tgcttattattatt---gtaactaactaaaataagcaaaataaatttattaataataataagtaatgaaaatcactagaatttcagtcatatatgttgga 51806754  T
Q  479 gatagtaaatatgaaagtagggcaatctgttgattgcaatagtacataccttaccccaaagagaatttagagaattctagcatcacaaaagtttaaatgc 578  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51806755 gatggtaaatatgaaagtagggcaatctgttgattgcaatagtacataccttaccccaaagagaatttagagaattctaacatcacaaaagtttaaatgc 51806854  T
Q  579 ctactcataaagc--tatctgctgatggattctgaaaaaagtatttc 623  Q
    | |||||||||||  ||| ||||||||||||||||||||||||||||    
T  51806855 cgactcataaagctatatatgctgatggattctgaaaaaagtatttc 51806901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 24117185 - 24117065
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgc 209  Q
    ||||||||||   ||||||||||| |||||||| || |||||  |||||  ||||||||||||||||||||| || ||||||  | |||| |||||||      
T  24117185 cttcaaaatcatttaaaatcctgcgattttgcacgggtttcaccatttttcgcgactttgatgtgattttacaaggattttgtttgttttgggattctaa 24117086  T
Q  210 aatgaatttgaatcgttgaag 230  Q
     || |||||||||||||||||    
T  24117085 tataaatttgaatcgttgaag 24117065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 18337529 - 18337593
Alignment:
Q  166 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 230  Q
    ||||||| ||||||||||| |||||||||||||| || |||||| ||| |||||| |||||||||    
T  18337529 tttgatgcgattttactaggattttgcctattttggggttctgctatggatttgagtcgttgaag 18337593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 23528758 - 23528710
Alignment:
Q  186 attttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 234  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||||||    
T  23528758 attttgcctattttaggattctactatggatttgagtcgttgaagatga 23528710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 16417431 - 16417368
Alignment:
Q  166 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaa 229  Q
    ||||||| ||||||||||||| |||| || |||| ||||| || ||||||||||||| ||||||    
T  16417431 tttgatgcgattttactagaactttgtctgttttgggattttgaaatgaatttgaatagttgaa 16417368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 42947851 - 42947938
Alignment:
Q  265 ccatgatttgttgtgcatgtgcacgtaatcacaatcatttatttgtttatcaacgcttgatattactcactttactctataaagtgaa 352  Q
    |||||||||||| | ||| ||||  ||||  ||| |||| ||||||||||||||| ||||||||||||  |||||||| |||| ||||    
T  42947851 ccatgatttgttttacatttgcatataatatcaaccattgatttgtttatcaacggttgatattactcgttttactctctaaaatgaa 42947938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 355
Target Start/End: Complemental strand, 43034367 - 43034333
Alignment:
Q  321 ttgatattactcactttactctataaagtgaattg 355  Q
    |||||||||||||||||||||| ||||||||||||    
T  43034367 ttgatattactcactttactctttaaagtgaattg 43034333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 12003187 - 12003231
Alignment:
Q  186 attttgcctattttaggattctgcaatgaatttgaatcgttgaag 230  Q
    ||||||||| |||| ||||| ||| ||||||||||||||||||||    
T  12003187 attttgcctgttttgggattttgctatgaatttgaatcgttgaag 12003231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 18459672 - 18459778
Alignment:
Q  123 taaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaat 222  Q
    |||||||||||||||||| ||| |||||| |||||||||||| |||||||   ||||||||| |||||||||||||||||||||||| ||| |||||| |    
T  18459672 taaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttactaggattttgcctattttaggattctgctatggatttgagt 18459771  T
Q  223 cgttgaa 229  Q
    |||||||    
T  18459772 cgttgaa 18459778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 10394675 - 10394568
Alignment:
Q  123 taaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaat 222  Q
    ||||||||||| |||||| |||||||| |||||||||||||| ||| |||  ||||||| || || ||||||||||||  ||||| | |||||||| | |    
T  10394675 taaaatcctgcgattttgaatggatttaatgattttgtgcgattttaatgcaattttacaaggatcttgcctattttaaaattctactatgaatttaagt 10394576  T
Q  223 cgttgaag 230  Q
    ||||||||    
T  10394575 cgttgaag 10394568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 7452597 - 7452504
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttagga 203  Q
    |||||||| ||  |||||||||||||||||| ||| |||||| |||||||||||| || || | ||||||| ||| ||||||||||| ||||||    
T  7452597 cttcaaaaccctttaaaatcctgcaattttgtatgtatttcacgattttgtgcgatttagaagcgattttattaggattttgcctatattagga 7452504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 610573 - 610669
Alignment:
Q  142 atggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagtaa 238  Q
    |||||||||| |||||||||||| ||||||| | ||| | ||| |||||| || |||||  |||||||||| ||||| |||||||||| | ||||||    
T  610573 atggatttcacgattttgtgcgattttgatgcggtttcattaggattttgtctgttttaaaattctgcaataaatttcaatcgttgaaaacgagtaa 610669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 4156940 - 4156844
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattct 207  Q
    |||||||||||  ||||||| ||| |||||| ||| ||||||  |||| ||| || ||||||| ||||||||||  ||||||| ||||||||||||||    
T  4156940 cttcaaaatcctttaaaatcttgcgattttgtatgtatttcacaattt-gtgtgattttgatgcgattttactaagattttgcttattttaggattct 4156844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 37951637 - 37951680
Alignment:
Q  305 atttgtttatcaacgcttgatattactcactttactctataaag 348  Q
    ||||||||||||||  |||||||||||||||||||||| |||||    
T  37951637 atttgtttatcaacagttgatattactcactttactctctaaag 37951680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 5884466 - 5884527
Alignment:
Q  177 tttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagtaa 238  Q
    |||||||||||||||||||||||   ||| ||||||| ||||| |||| ||||| |||||||    
T  5884466 tttactagaattttgcctatttttacattttgcaatggatttggatcgatgaaggtgagtaa 5884527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 46664331 - 46664412
Alignment:
Q  124 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggatt 205  Q
    ||||||||  || |||| |||||||| | ||||||||| || ||||||| ||||||||||| ||| ||||| |||| |||||    
T  46664331 aaaatcctttaaatttgtatggattttaggattttgtgggattttgatgcgattttactaggattatgcctgttttgggatt 46664412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 24719631 - 24719575
Alignment:
Q  174 gattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 230  Q
    ||||||||||| ||||  || ||||||||||||||| ||| |||||| |||||||||    
T  24719631 gattttactaggatttcacccattttaggattctgctatggatttgagtcgttgaag 24719575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 37118 - 37237
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgc 209  Q
    |||||||| ||  ||||||| |||| |||||||| ||||||| ||||||||| || ||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  37118 cttcaaaaccctttaaaatcatgca-ttttgcatagatttcacgattttgtgtgattttgatgcgattttactaggattttacctattttaagattctgc 37216  T
Q  210 aatgaatttgaatcgttgaag 230  Q
     ||| |||||| | |||||||    
T  37217 tatggatttgagttgttgaag 37237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29308035 - 29307962
Alignment:
Q  1 aaagaggatgatgtggcccaatcagagagagtgtggttaagagagtgtgttagagagtttgaccatagcattcc 74  Q
    |||||||||||  ||||||||| |||||||||||||||||| |||||| || ||||||||||||||| ||||||    
T  29308035 aaagaggatgacatggcccaattagagagagtgtggttaagggagtgtatttgagagtttgaccataacattcc 29307962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 15761456 - 15761510
Alignment:
Q  176 ttttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 230  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||    
T  15761456 ttttactagaattttgcctattttgggattttgctatgaatttgagtcgttgaag 15761510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 17788320 - 17788385
Alignment:
Q  173 tgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagtaa 238  Q
    |||||||||||| |||||||||||||||  |||  |||||||||||||||  |||||| |||||||    
T  17788320 tgattttactaggattttgcctattttaaaatttcgcaatgaatttgaatatttgaaggtgagtaa 17788385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 26879250 - 26879169
Alignment:
Q  147 tttcatgattttgtgcgactttgatgtgattttactagaattttg--cctattttaggattctgcaatgaatttgaatcgtt 226  Q
    ||||| |||||||||| | ||||||| |||||||||||| |||||  | ||||||| |||| |||  |||||||||||||||    
T  26879250 tttcacgattttgtgcaattttgatgcgattttactagagttttgcacgtattttaagattttgctgtgaatttgaatcgtt 26879169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 1018280 - 1018337
Alignment:
Q  177 tttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 234  Q
    |||||||||| |||| ||  ||||| ||| || |||||||||||||||||||||||||    
T  1018280 tttactagaaatttgtctgctttagaattttgtaatgaatttgaatcgttgaagatga 1018337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 16751992 - 16751932
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 171  Q
    |||||||||||   |||||||||| |||||| |||||||||| |||||||||||| ||||||    
T  16751992 cttcaaaatccatcaaaatcctgcgattttgaatggatttca-gattttgtgcgattttgat 16751932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 32424435 - 32424394
Alignment:
Q  185 aattttgcctattttaggattctgcaatgaatttgaatcgtt 226  Q
    ||||||| ||||||||||||||| | ||||||||||||||||    
T  32424435 aattttgtctattttaggattctactatgaatttgaatcgtt 32424394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 3094280 - 3094324
Alignment:
Q  186 attttgcctattttaggattctgcaatgaatttgaatcgttgaag 230  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||    
T  3094280 attttgcctattttaggattctactatggatttgagtcgttgaag 3094324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 5395613 - 5395723
Alignment:
Q  124 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatc 223  Q
    |||||||||||||||||  || |||||||||||||||| || |||||||   ||||||||  ||||||||||||||  |||||||| ||| |||||| ||    
T  5395613 aaaatcctgcaattttgtttgaatttcatgattttgtgagattttgatgcatttttactaagattttgcctattttgagattctgctatggatttgagtc 5395712  T
Q  224 gttgaagatga 234  Q
     || |||||||    
T  5395713 atttaagatga 5395723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 32399757 - 32399687
Alignment:
Q  1 aaagaggatgatgtggcccaatcagagagagtgtggttaagagagtgtgttagagagtttgaccatagcatt 72  Q
    ||||| |||||||||||||||||||||||||||| |  ||| ||||||||| ||||||||||| ||||||||    
T  32399757 aaagatgatgatgtggcccaatcagagagagtgt-gacaagggagtgtgtttgagagtttgactatagcatt 32399687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 8428306 - 8428210
Alignment:
Q  124 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttga 220  Q
    |||||||| |||||||| ||| |||||  ||||||||  || ||||||  ||||||||||  ||||||||||||||| |||||| | ||||||||||    
T  8428306 aaaatccttcaattttgtatgaatttcgggattttgtaggattttgatacgattttactaagattttgcctattttaagattctcctatgaatttga 8428210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 31023337 - 31023282
Alignment:
Q  174 gattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaa 229  Q
    ||||||| || ||||||||||||||||||||||| | |||||||||| ||||||||    
T  31023337 gattttaatataattttgcctattttaggattctactatgaatttgagtcgttgaa 31023282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 19257479 - 19257539
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttga 170  Q
    ||||||||| |  ||||||||||| |||||| ||||||||||  ||||||||||| |||||    
T  19257479 cttcaaaattctttaaaatcctgcgattttgaatggatttcacaattttgtgcgattttga 19257539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 44553267 - 44553235
Alignment:
Q  42 agagtgtgttagagagtttgaccatagcattcc 74  Q
    ||||||||||||||||| |||||||||||||||    
T  44553267 agagtgtgttagagagtgtgaccatagcattcc 44553235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 61334 - 61454
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgc 209  Q
    |||||||| ||  |||||||||||  ||||| ||| |||||| | |||||||||| |||||||  ||||||||| |||||||| |||||| |||||||      
T  61334 cttcaaaacccattaaaatcctgcggttttgtatgaatttcacgtttttgtgcgattttgatgcaattttactataattttgcttattttgggattctca 61433  T
Q  210 aatgaatttgaatcgttgaag 230  Q
     ||| ||||||| ||||||||    
T  61434 tatggatttgaaccgttgaag 61454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 4574634 - 4574563
Alignment:
Q  166 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagta 237  Q
    |||||||  |||||| ||| ||||||| |||||| | |||||||||||||||||||||||||||| ||||||    
T  4574634 tttgatgcaattttagtaggattttgcttattttggaattctgcaatgaatttgaatcgttgaaggtgagta 4574563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 4574556 - 4574521
Alignment:
Q  203 attctgcaatgaatttgaatcgttgaagatgagtaa 238  Q
    |||||||||||||||||||||||||||| |||||||    
T  4574556 attctgcaatgaatttgaatcgttgaaggtgagtaa 4574521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 44944872 - 44944922
Alignment:
Q  186 attttgcctattttaggattctgcaatgaatttgaatcgttgaagatgagt 236  Q
    |||||| ||||||||||||||| | ||| |||||||||||||||| |||||    
T  44944872 attttgactattttaggattctactatggatttgaatcgttgaaggtgagt 44944922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 21157725 - 21157842
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgc 209  Q
    |||||||||||  |||||| |||| |||||| ||| |||||| | |||||||| | ||| | | ||||||||||  ||||| | | |||||||||| |||    
T  21157725 cttcaaaatcctttaaaattctgcgattttgtatgaatttcacggttttgtgcaatttttaagcgattttactacgatttttcttgttttaggattttgc 21157824  T
Q  210 aatgaatttgaatcgttg 227  Q
     ||| |||||| ||||||    
T  21157825 tatggatttgagtcgttg 21157842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 26565635 - 26565695
Alignment:
Q  166 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgtt 226  Q
    ||||||| ||||||| ||| || |||| ||||||  |||||||| ||||||||||||||||    
T  26565635 tttgatgcgattttagtaggatcttgcatattttgagattctgctatgaatttgaatcgtt 26565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 4597163 - 4597226
Alignment:
Q  171 tgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 234  Q
    |||| ||||||||| ||||||||||||||   |||||||||||||||||||||||| |||||||    
T  4597163 tgtggttttactaggattttgcctatttttaaattctgcaatgaatttgaatcgttaaagatga 4597226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 4841883 - 4841990
Alignment:
Q  123 taaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaat 222  Q
    ||||||| ||| || ||| ||| || ||| |||||||||||| ||||| | ||||||||||| |||||||||||| | ||||||||| | | |||||| |    
T  4841883 taaaatcatgcgatcttgtatgaatctcacgattttgtgcgattttgaagcgattttactagtattttgcctattatgggattctgctacggatttgagt 4841982  T
Q  223 cgttgaag 230  Q
    ||||||||    
T  4841983 cgttgaag 4841990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 12245284 - 12245174
Alignment:
Q  113 caaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaat 212  Q
    ||||||||  ||||||||| ||||||||||||  ||||| |||||| | ||| |||||||  ||||| |||| |||||  || |||| ||||| ||||||    
T  12245284 caaaatcctgtaaaatccttcaattttgcatgtgtttcacgattttattcgattttgatgctatttttctaggattttatctgttttgggattttgcaat 12245185  T
Q  213 gaatttgaatc 223  Q
    | |||| ||||    
T  12245184 ggatttaaatc 12245174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 1178835 - 1178799
Alignment:
Q  202 gattctgcaatgaatttgaatcgttgaagatgagtaa 238  Q
    |||||||||||| |||||||||||||||| |||||||    
T  1178835 gattctgcaatggatttgaatcgttgaaggtgagtaa 1178799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 19750169 - 19750201
Alignment:
Q  42 agagtgtgttagagagtttgaccatagcattcc 74  Q
    ||||||||||||||||| |||||||||||||||    
T  19750169 agagtgtgttagagagtgtgaccatagcattcc 19750201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 3041244 - 3041189
Alignment:
Q  124 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgatttt 179  Q
    |||||||||| |||||| |||||||||| |||||||||||| |||||| |||||||    
T  3041244 aaaatcctgcgattttgaatggatttcacgattttgtgcgattttgatatgatttt 3041189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 22970772 - 22970725
Alignment:
Q  124 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 171  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||||    
T  22970772 aaaatcctgcgattttgaatggatttcatgattttgtgcgattttgat 22970725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 28135844 - 28135790
Alignment:
Q  166 tttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttga 220  Q
    ||||||||||||||||||||||||||||||||| || ||| ||| ||| ||||||    
T  28135844 tttgatgtgattttactagaattttgcctatttgagaattttgctatggatttga 28135790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 10872961 - 10873017
Alignment:
Q  174 gattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 230  Q
    ||||||||||| ||||||||||||||  |||||||| ||| |||||| |||||||||    
T  10872961 gattttactaggattttgcctattttgagattctgctatggatttgagtcgttgaag 10873017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 39432781 - 39432734
Alignment:
Q  304 tatttgtttatcaacgcttgatattactcactttactctataaagtga 351  Q
    ||||| |||||||||| |||||||||||||||||||||| || |||||    
T  39432781 tatttatttatcaacggttgatattactcactttactctctacagtga 39432734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 17796477 - 17796431
Alignment:
Q  188 tttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 234  Q
    |||| ||||||||||||||||| |||||||||| | |||||||||||    
T  17796477 tttgtctattttaggattctgctatgaatttgagttgttgaagatga 17796431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 19104917 - 19104871
Alignment:
Q  188 tttgcctattttaggattctgcaatgaatttgaatcgttgaagatga 234  Q
    |||| ||||||||||||||||| |||||||||| | |||||||||||    
T  19104917 tttgtctattttaggattctgctatgaatttgagttgttgaagatga 19104871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 33771592 - 33771638
Alignment:
Q  26 agagagtgtggttaagagagtgtgttagagagtttgaccatagcatt 72  Q
    |||||||||| |||| |||||||||||||||||||| | ||||||||    
T  33771592 agagagtgtgtttaatagagtgtgttagagagtttgtcaatagcatt 33771638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 15806482 - 15806522
Alignment:
Q  124 aaaatcctgcaattttgcatggatttcatgattttgtgcga 164  Q
    |||||||||| |||||| |||||||||| ||||||||||||    
T  15806482 aaaatcctgcgattttgtatggatttcacgattttgtgcga 15806522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 15806521 - 15806577
Alignment:
Q  174 gattttactagaattttgcctattttaggattctgcaatgaatttgaatcgttgaag 230  Q
    ||||||||||| ||||||||| |||| ||||||||| ||| |||||| || ||||||    
T  15806521 gattttactaggattttgcctgttttgggattctgctatggatttgagtcattgaag 15806577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 17796641 - 17796605
Alignment:
Q  123 taaaatcctgcaattttgcatggatttcatgattttg 159  Q
    |||||||||||||||||| |||||||||| |||||||    
T  17796641 taaaatcctgcaattttgtatggatttcacgattttg 17796605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 19105081 - 19105045
Alignment:
Q  123 taaaatcctgcaattttgcatggatttcatgattttg 159  Q
    |||||||||||||||||| |||||||||| |||||||    
T  19105081 taaaatcctgcaattttgtatggatttcacgattttg 19105045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 26234983 - 26234879
Alignment:
Q  124 aaaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggattctgcaatgaatttgaatc 223  Q
    |||||||||| |||||||||| |||| |  ||||||||||| ||||||   |||||| ||  |||||| |||||||  |||||||| ||| |||| |||     
T  26234983 aaaatcctgcgattttgcatgaattttacaattttgtgcgattttgatacaattttattaagattttgtctatttttagattctgctatggatttaaatt 26234884  T
Q  224 gttga 228  Q
    |||||    
T  26234883 gttga 26234879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 15445907 - 15445849
Alignment:
Q  125 aaatcctgcaattttgcatggatttcatgattttgtgcgactttgatgtgattttacta 183  Q
    |||||||| |||||| |||| ||||||||||||||||||| |||||||  |||||||||    
T  15445907 aaatcctgaaattttacatgaatttcatgattttgtgcgattttgatgctattttacta 15445849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 13350037 - 13350106
Alignment:
Q  136 ttttgcatggatttcatgattttgtgcgactttgatgtgattttactagaattttgcctattttaggatt 205  Q
    ||||||| ||||||||  | ||||||||| |||||||||||||||||||| ||||| || |||| |||||    
T  13350037 ttttgcaaggatttcacaactttgtgcgattttgatgtgattttactagagttttgtctgtttttggatt 13350106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 4289979 - 4289918
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 171  Q
    |||||||||||   |||||||||| |||||| | |||||||| |||||||||||| ||||||    
T  4289979 cttcaaaatccatcaaaatcctgcgattttgaacggatttcacgattttgtgcgattttgat 4289918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 24357 - 24299
Alignment:
Q  113 caaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 171  Q
    ||||||||  ||||||||||  |||||| |||||||||| |||||||||||| ||||||    
T  24357 caaaatccattaaaatcctgtgattttgaatggatttcacgattttgtgcgattttgat 24299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 5562 - 5623
Alignment:
Q  110 cttcaaaatcccataaaatcctgcaattttgcatggatttcatgattttgtgcgactttgat 171  Q
    |||||||||||  ||||||||| |||||||| | |||||| | |||||||||||| ||||||    
T  5562 cttcaaaatcctttaaaatcctacaattttgaacggattttacgattttgtgcgattttgat 5623  T

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