View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5952_low_2 (Length: 528)
Name: NF5952_low_2
Description: NF5952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5952_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 15111687 - 15112167
Alignment:
| Q |
19 |
atactcaactatgaaaaattggaatgaacttggcgtgtttgtagattcaatggtaaagatttcttaacaagacttagaggaaagagtctcatgtttgttg |
118 |
Q |
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| T |
15111687 |
atactgaactttgaaaaattggaatgaacttggcttgtttgtagattcaatggtgaagatttcttaacaaaacttagaggaaagagtgtcttgtttgttg |
15111786 |
T |
|
| Q |
119 |
gagactccttgagtttgaatcaatggcaatcactctcttgcatgattcacaaatctatgccacatatcaagtacatctcagtcaccaacaaaggtctctc |
218 |
Q |
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| T |
15111787 |
gagactccttgagtttgaatcaatggcaatcactctcttgcatgattcacaaatctatgccacatatcaagtacatctcagtcaccaacaaaggtctctc |
15111886 |
T |
|
| Q |
219 |
taccttcaccttcccggtaagatgtttttcacctaacttatgaaatattttctttcacttctcttttactattagttctca--------------cctta |
304 |
Q |
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| T |
15111887 |
taccttcaccttcccggtaagatgtttttcaccgaacttacgaaattttttctttcacttctcttttactattattcaacatatattttgaaaatcatta |
15111986 |
T |
|
| Q |
305 |
ttaggacgattttgattaacaatgtaatttatttctaattgtataggtctcaaacacttagtgacataattatttatttctctttttggtttcggagagt |
404 |
Q |
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| T |
15111987 |
ttaggacaattttgattaacaatgtaatttatttctaattgtataggtcttaaacacttagtaacataattatttatttctctttttggtttcaaagagt |
15112086 |
T |
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| Q |
405 |
ttagcggctaaactc--atatacacttaggaacgtaatta-tacatgtgtaattctatttgaaattgtgaccaaccaagta |
482 |
Q |
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| T |
15112087 |
ttagcggctaaactcatatatacacttaggaacgtaattattacatgtgtaattctatttgaagttgtgaccaaccaagta |
15112167 |
T |
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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 18361668 - 18361567
Alignment:
| Q |
61 |
agattcaatggtaaagatttcttaacaagacttagaggaaagagtctcatgtttgttggagactccttgagtttgaatcaatggcaatcactctcttgca |
160 |
Q |
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|||||||| ||| |||||||||||| |||| |||||| || ||| | |||||||||| ||||| ||||||||||||||||||||||||||| |||||| |
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| T |
18361668 |
agattcaacggtgaagatttcttaagaagatatagagggaaaagtattttgtttgttggggactctttgagtttgaatcaatggcaatcactcacttgca |
18361569 |
T |
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| Q |
161 |
tg |
162 |
Q |
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|| |
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| T |
18361568 |
tg |
18361567 |
T |
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