View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5952_low_3 (Length: 479)

Name: NF5952_low_3
Description: NF5952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5952_low_3
NF5952_low_3
[»] chr4 (4 HSPs)
chr4 (19-468)||(6612639-6613087)
chr4 (58-437)||(27014841-27015220)
chr4 (70-421)||(42329360-42329711)
chr4 (348-425)||(25176988-25177065)
[»] scaffold0381 (1 HSPs)
scaffold0381 (58-437)||(4563-4942)
[»] chr5 (1 HSPs)
chr5 (31-383)||(22789884-22790235)
[»] chr8 (2 HSPs)
chr8 (118-463)||(29383150-29383495)
chr8 (57-173)||(43222040-43222156)
[»] chr3 (3 HSPs)
chr3 (73-413)||(54565320-54565662)
chr3 (58-227)||(12530143-12530312)
chr3 (56-439)||(44491147-44491530)
[»] chr2 (1 HSPs)
chr2 (57-366)||(45009939-45010247)
[»] chr1 (2 HSPs)
chr1 (73-219)||(41327550-41327696)
chr1 (73-219)||(41337782-41337927)
[»] chr6 (6 HSPs)
chr6 (70-418)||(11609151-11609499)
chr6 (56-219)||(20916349-20916512)
chr6 (73-219)||(20926302-20926447)
chr6 (142-219)||(20916791-20916868)
chr6 (178-241)||(17395936-17395999)
chr6 (336-430)||(17395751-17395845)
[»] chr7 (4 HSPs)
chr7 (259-371)||(3208804-3208916)
chr7 (301-458)||(23159480-23159637)
chr7 (57-173)||(8866223-8866339)
chr7 (205-392)||(8866007-8866194)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 6612639 - 6613087
Alignment:
Q  19 cctatgccaatacatcagacatggtttagtgtccaacaaatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  6612639 cctatgccaatacatcagacatggtttagtgtccaacaaatgagtgttatcggttggaattgccgaggtt-gggtagcccgagcgcaactcctgatttaa 6612737  T
Q  119 aatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttga 218  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  6612738 aatatctccttcagcacttcaatccggacgtactcttcttaagtgagacactagtatcccgaaataaaattgaagttttacgttacttgcttggttttga 6612837  T
Q  219 ttcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatcat 318  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6612838 ttcctgtttttccgttgattgcaccggtaggagtggtggccttgctttattttggcgtacctcttctaattgcatgcttgttaattattctaataatcat 6612937  T
Q  319 attacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6612938 attacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatggggaacgtaggagagctgcgtgggagtttc 6613037  T
Q  419 ttcgtcagttgtctaatcaatatgcagatccttggtgtatctttgatgat 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6613038 ttcgtcagttgtctaatcaatatgcagatccttggtgtatctttggtgat 6613087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 58 - 437
Target Start/End: Complemental strand, 27015220 - 27014841
Alignment:
Q  58 atgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttct 157  Q
    ||||||||||| |||||||| ||||| || || || |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||| ||||||| |    
T  27015220 atgagtgttattagttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttt 27015121  T
Q  158 taagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtgg 257  Q
    ||||||||||| | ||    |||||||||||||| ||||| || || ||||| ||||||||||| |||||||| ||||||||||||  ||| || |||||    
T  27015120 taagtgagacattggttcgccgaaataaaattgaagtttttcgatatttgctcggttttgattcttgtttttctgttgattgcaccaatagaagcggtgg 27015021  T
Q  258 ccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttgg 357  Q
     |||||||||||  |||| || |||||||||||    ||||  |||||||| || ||||| ||||| |||||| ||   || |||||||||||| |||||    
T  27015020 tcttgctttattccggcgcacttcttctaattgtcaacttgcaaattattccaacaatcacattaccgttgaaattaccgactctgttcatggtccttgg 27014921  T
Q  358 agactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttcttcgtcagttgtctaatca 437  Q
    ||||||||||| ||||||||||||||  | |||||||||||| |   ||||||||| || ||||| ||||| | ||||||    
T  27014920 agactcaccggatactacgggtaccctgaagggggacgtaggcgtcttgcgtgggatttccttcgacagttatgtaatca 27014841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 421
Target Start/End: Original strand, 42329360 - 42329711
Alignment:
Q  70 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 169  Q
    |||||||||||| | ||||||||||||| ||  |||| ||  |||||||| || || ||||| ||||||||||||||| |  | || ||||||||||||     
T  42329360 agttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagtacctagttcggcacttcaatccggacctcttatttttaagtgagacat 42329459  T
Q  170 tagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttatt 269  Q
    ||||    || ||||||||||| |  ||  ||||  | ||||||||| | ||||||||||| |||||  | |||| ||| || || || |||||||| ||    
T  42329460 tagtccaccgtaataaaattgaagaattatgttatgttcttggttttaactcctgtttttctgttgaccgaaccggtagaagcggcggacttgctttctt 42329559  T
Q  270 ttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggt 369  Q
    ||| |  || |||  ||||||    ||| || ||||||| ||||| ||||| ||||||||  || ||||||||  ||   || |||||| ||| || ||     
T  42329560 ttgacacacttctcttaattgtcaacttattgattattcaaataaccatataacagttgagattgttgattctaatctgcgtccttggaaacttactggc 42329659  T
Q  370 tactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttcttc 421  Q
    ||||| |||||||| ||||||||||||||| | |||||||||||||||||||    
T  42329660 tactatgggtaccctaatgggggacgtaggcgtgctgcgtgggagtttcttc 42329711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 25177065 - 25176988
Alignment:
Q  348 tggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttcttcgtca 425  Q
    |||||||| |||||||||  | |||||| |||||||||||||||||| |||| | ||||| ||||| |||| ||||||    
T  25177065 tggtacttagagactcacatgctactacaggtaccccaatgggggacataggcgtgctgcctgggactttcctcgtca 25176988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 58 - 437
Target Start/End: Original strand, 4563 - 4942
Alignment:
Q  58 atgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttct 157  Q
    ||||||||||| |||||||| ||||| || || || |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||| ||||||| |    
T  4563 atgagtgttattagttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttt 4662  T
Q  158 taagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtgg 257  Q
    ||||||||||| | ||    |||||||||||||| ||||| || || ||||| ||||||||||| |||||||| ||||||||||||  ||| || |||||    
T  4663 taagtgagacattggttcgccgaaataaaattgaagtttttcgatatttgctcggttttgattcttgtttttctgttgattgcaccaatagaagcggtgg 4762  T
Q  258 ccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttgg 357  Q
     |||||||||||  |||| || |||||||||||    ||||  |||||||| || ||||| ||||| |||||| ||   || |||||||||||| |||||    
T  4763 tcttgctttattccggcgcacttcttctaattgtcaacttgcaaattattccaacaatcacattaccgttgaaattaccgactctgttcatggtccttgg 4862  T
Q  358 agactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttcttcgtcagttgtctaatca 437  Q
    ||||||||||| ||||||||||||||  | |||||||||||| |   ||||||||| || ||||| ||||| | ||||||    
T  4863 agactcaccggatactacgggtaccctgaagggggacgtaggcgtcttgcgtgggatttccttcgacagttatgtaatca 4942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 31 - 383
Target Start/End: Complemental strand, 22790235 - 22789884
Alignment:
Q  31 catcagacatggtttagtgtccaacaaatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttc 130  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||| ||| |||| |  ||||||||| || || ||||    
T  22790235 catcagacatg-tttagtgtccaacaaatgagtgttatcggttggaattgcaggggtttaggtagcccgagtgcaatttctgatttaaagtacctagttc 22790137  T
Q  131 gccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttc 230  Q
    | |||||||||||||   || | ||||||||||||||| ||||    || ||||||||||| | ||| ||| || |||||||||||||||  || |||||    
T  22790136 ggcacttcaatccggttctattattcttaagtgagacattagtccaccgtaataaaattgaagctttacgtcacctgcttggttttgattgatgcttttc 22790037  T
Q  231 cgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaa 330  Q
     ||||||||    | ||| |||||||||||||| |||||||||||  | |||| ||| ||   | |||| || ||||| |||||||||||  | || ||     
T  22790036 tgttgattgttatggtagaagtggtggccttgcattattttggcgcgcttcttttaactgtcagattgtaaactattcaaataatcatatgtctgtagac 22789937  T
Q  331 ttttttgattctgttcatggtacttggagactcaccggttactacgggtaccc 383  Q
     || ||||||||||||| |||  ||||||| ||||||||||||||||||||||    
T  22789936 gttgttgattctgttcaaggtgtttggagattcaccggttactacgggtaccc 22789884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 463
Target Start/End: Original strand, 29383150 - 29383495
Alignment:
Q  118 aaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttg 217  Q
    ||||| ||||||||  ||||||||  |||| |||| || |||||||||||||||||    |||||||||||||| | ||| ||||| ||||| |||||||    
T  29383150 aaatacctcgttcgatacttcaatatggacctactatttttaagtgagacactagtccaccgaaataaaattgaagatttacgttatttgctgggttttg 29383249  T
Q  218 attcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatca 317  Q
    |||| || ||||  |||||| |||||| |||  | || || ||||||||||| ||||| || |||  | ||||    |||||||||| ||||||||||||    
T  29383250 attcttgcttttatgttgatcgcaccggtagtggaggcggtcttgctttattgtggcgcacttctcttcattgtcaacttgttaatttttctaataatca 29383349  T
Q  318 tattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagttt 417  Q
     |||||  ||||| || |||| | ||||| ||||   |||| |||||||| ||||||| ||||||| |||||| |||||||| | ||| ||||||| |||    
T  29383350 cattactattgaaattgttgactatgttcttggtttatggatactcaccgattactacaggtaccctaatgggcgacgtaggcgtgctacgtgggacttt 29383449  T
Q  418 cttcgtcagttgtctaatcaatatgcagatccttggtgtatctttg 463  Q
    || ||| | || |||  |||| |||||  ||| |||||||||||||    
T  29383450 ctccgtaatttatctggtcaaaatgcaagtccatggtgtatctttg 29383495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 43222156 - 43222040
Alignment:
Q  57 aatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttc 156  Q
    ||||||| |||| ||||||||||| || || |||||||  | ||||| || | ||||||||||||||||||||||  ||| ||||||||   | || |||    
T  43222156 aatgagtattattagttggaattgtcggggattgggtaatccgagcgtaatttttgatttaaaatatctcgttcggtactacaatccggctatccttttc 43222057  T
Q  157 ttaagtgagacactagt 173  Q
    ||| |||||||||||||    
T  43222056 ttatgtgagacactagt 43222040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 413
Target Start/End: Complemental strand, 54565662 - 54565320
Alignment:
Q  73 tggaattgccgaggtttggg-tagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacg-tactcttcttaagtgagacact 170  Q
    |||||||| || |||||||| |||||  ||||||| |||||||||||| ||  | ||||| ||||| |||||||||  || | || |||||||||||| |    
T  54565662 tggaattgacggggtttggggtagcccaagcgcaattcttgatttaaagtacatagttcggcactttaatccggaccctattatttttaagtgagacatt 54565563  T
Q  171 agtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattt 270  Q
    |||    || ||||||||||| | | | |||||| |||||| ||||||||  |||||||| |||||||| || | ||| |||||||||||||| ||||||    
T  54565562 agtccatcgtaataaaattgaagctctacgttacgtgcttgattttgatttttgtttttctgttgattgtactggtagaagtggtggccttgcattattt 54565463  T
Q  271 tggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggtt 370  Q
    |||||| |||||| ||| ||   | |||  ||||  || |||||||||||| | |||||  || ||||||| |||||||||  ||||||  |||  || |    
T  54565462 tggcgtgcctcttttaactgtcagattgcaaattgctcaaataatcatatttctgttgacgttgttgattccgttcatggtgtttggaggttcattggct 54565363  T
Q  371 actacgggtaccccaatgggggacgtaggagagctgcgtggga 413  Q
    |||||||||||||  | ||||||| |||| |||| ||||||||    
T  54565362 actacgggtaccctgaagggggacataggcgagcagcgtggga 54565320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 12530312 - 12530143
Alignment:
Q  58 atgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttct 157  Q
    ||||||||||| |||||||| ||||| || || || |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||||||||||| |    
T  12530312 atgagtgttattagttggaactgccggggattaggaagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacgtactctttt 12530213  T
Q  158 taagtgagacactagtatca-cgaaataaaattgacgttttccgttacttgcttggttttgattcctgttt 227  Q
    ||||| ||||| | || ||| |||||||||||||| | ||| || || ||||| ||||||||||| |||||    
T  12530212 taagtcagacattggt-tcaccgaaataaaattgaagcttttcgatatttgctcggttttgattcttgttt 12530143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 439
Target Start/End: Original strand, 44491147 - 44491530
Alignment:
Q  56 aaatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactctt 155  Q
    |||||||| | || |||||||||||| | ||||||||||||| ||  |||| ||  |||||||| || || |||||  |||||||||||||| |  | ||    
T  44491147 aaatgagtctaataagttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagtacctagttcggtacttcaatccggaccttttatt 44491246  T
Q  156 cttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggt 255  Q
     |||| |||||| |||||    |||||||||||||| |  || |||||||||||||| |||||||  || |||||  ||||| | |  | |||  | ||     
T  44491247 tttaactgagacgctagtccaccgaaataaaattgaagaattacgttacttgcttggctttgatttttgcttttcttttgatcgaattggtagaggcgga 44491346  T
Q  256 ggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtactt 355  Q
    ||||||||||||||||||||  | || | ||||||     ||||||| |||||  | ||||||||    |||||  || | |||||||||| ||||   |    
T  44491347 ggccttgctttattttggcgcgcgtcctttaattgtcaaattgttaactattcacaaaatcatatatatgttgatgttatggattctgttcttggtttgt 44491446  T
Q  356 ggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttcttcgtcagttgtctaatcaat 439  Q
    |||| |||||||||||||||||||||||  |  |||||||| | |||  ||||||||| || |||||| | |||||||||||||    
T  44491447 ggaggctcaccggttactacgggtaccctgaacggggacgtcgaagacttgcgtgggatttccttcgtaatttgtctaatcaat 44491530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 366
Target Start/End: Original strand, 45009939 - 45010247
Alignment:
Q  57 aatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttc 156  Q
    ||||||| | || ||||||||||| || ||||| ||||||| |||||||| ||  || || ||||| ||  |||| ||||| ||||||||| | ||||||    
T  45009939 aatgagtctgataagttggaattgtcg-ggtttaggtagcccgagcgcaattcccgacttgaaatacctaattcggcactttaatccggacatcctcttc 45010037  T
Q  157 ttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtg 256  Q
    |||||||||||  ||||    |||||||||||||| |  ||   |||||| |||||||||||||| ||| | || |||||  |||| |  ||  |||| |    
T  45010038 ttaagtgagactttagtccatcgaaataaaattgaagaattattttacttacttggttttgattcttgtatctcagttgaccgcactggaagaggtgggg 45010137  T
Q  257 gccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttg 356  Q
    | ||||| |||||||||| |    |||||| |||||  |||||| ||| |||||||||||||||||| |||||| || |||||||||||| |||| ||||    
T  45010138 gtcttgccttattttggcatcatacttctagttgcaatcttgttgatttttctaataatcatattactgttgaaattattgattctgttcttggtccttg 45010237  T
Q  357 gagactcacc 366  Q
    ||||||||||    
T  45010238 gagactcacc 45010247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 41327550 - 41327696
Alignment:
Q  73 tggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactag 172  Q
    ||||||||||| ||||| ||||||  |||||||| |  |||  ||||||| || ||||  ||||||||||||||| | |||||||||||||||| | |||    
T  41327550 tggaattgccggggtttaggtagctcgagcgcaattgctgacctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattag 41327649  T
Q  173 tatcacgaaataaaattgacgttttccgttacttgcttggttttgat 219  Q
    |    |||||||||||||| | ||| |||||||||||||||||||||    
T  41327650 tccaccgaaataaaattgaagatttacgttacttgcttggttttgat 41327696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 41337782 - 41337927
Alignment:
Q  73 tggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactag 172  Q
    |||||||||| |||||| ||||||  |||||||| |  |||  ||||||| || ||||  ||||||||||||||| | |||||||||||||||| | |||    
T  41337782 tggaattgcc-aggtttaggtagctcgagcgcaattgctgacctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattag 41337880  T
Q  173 tatcacgaaataaaattgacgttttccgttacttgcttggttttgat 219  Q
    |    |||||||||||||| | ||| |||||||||||||||||||||    
T  41337881 tccaccgaaataaaattgaagatttacgttacttgcttggttttgat 41337927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 418
Target Start/End: Complemental strand, 11609499 - 11609151
Alignment:
Q  70 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 169  Q
    |||||||||||| | ||||||||||||| ||  |||| ||  |||||||| || || ||||| || |||||||||||| |  | || ||||| ||||||     
T  11609499 agttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagtacctagttcggcaattcaatccggacctcttatttttaagagagacat 11609400  T
Q  170 tagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttatt 269  Q
    ||||    || || |||||||| |  ||  ||||  | ||||||||||| || |||||||| |||||  | |||| ||| || || || |||||||| ||    
T  11609399 tagtccaccgtaaaaaaattgaagaattatgttatgttcttggttttgactcatgtttttctgttgaccgaaccggtagaagcggcggtcttgctttctt 11609300  T
Q  270 ttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggt 369  Q
    |||||| || |||  ||||||    ||| || ||||||| ||||| ||||| ||| ||||  || |||||| |  ||  ||| |||||| ||| |||||     
T  11609299 ttggcgcacttctcttaattgtcaacttattgattattcaaataaccatataacaattgagattattgattataatctgggtccttggaaacttaccggc 11609200  T
Q  370 tactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttc 418  Q
    |||||||||||||| ||||||||||||||| | | ||||||||||||||    
T  11609199 tactacgggtaccctaatgggggacgtaggcgtgttgcgtgggagtttc 11609151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 219
Target Start/End: Original strand, 20916349 - 20916512
Alignment:
Q  56 aaatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactctt 155  Q
    |||||||| ||||  | ||||||||||| ||||| ||||||  |||||||| ||  ||  ||||| | || ||||  | |||||| |||||| | |||||    
T  20916349 aaatgagtcttatagggtggaattgccggggtttaggtagctcgagcgcaattcccgacctaaaacacctagttctacccttcaacccggacctcctctt 20916448  T
Q  156 cttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 219  Q
    ||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||||||    
T  20916449 cttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 20926302 - 20926447
Alignment:
Q  73 tggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactag 172  Q
    |||||||||| |||||| ||||||  |||||||| || |||  |||||||  | | ||| ||||||||||| ||| | |||||||||||||||| | |||    
T  20926302 tggaattgcc-aggtttaggtagctcgagcgcaattcctgacctaaaatacttagctcgacacttcaatccagacctcctcttcttaagtgagatattag 20926400  T
Q  173 tatcacgaaataaaattgacgttttccgttacttgcttggttttgat 219  Q
    |    |||||||||||||| | ||  ||||| |||||||||||||||    
T  20926401 tccaccgaaataaaattgaagattgacgttatttgcttggttttgat 20926447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 20916791 - 20916868
Alignment:
Q  142 ccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 219  Q
    |||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||||||    
T  20916791 ccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 17395999 - 17395936
Alignment:
Q  178 cgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgca 241  Q
    |||||||||||||| ||||| ||| || ||||||||||| |||| ||||||||  |||||||||    
T  17395999 cgaaataaaattgaagtttttcgtaacatgcttggtttttattcttgtttttcttttgattgca 17395936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 17395845 - 17395751
Alignment:
Q  336 tgattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttcttcgtcagttgt 430  Q
    ||||||||||| ||||   |||||||||||||| ||||||||||| ||  |||||| |  |||  | ||||||||||| ||||||||||| ||||    
T  17395845 tgattctgttcttggtttatggagactcaccggatactacgggtatccttatggggaagttagacgtgctgcgtgggattttcttcgtcatttgt 17395751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 371
Target Start/End: Complemental strand, 3208916 - 3208804
Alignment:
Q  259 cttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttgga 358  Q
    ||||||||||||||||||| |||||   ||||||  |||||| ||| |||||  || |||||||| |||||| || |||||  ||||| ||||| |||||    
T  3208916 cttgctttattttggcgtaactctttacattgcagacttgttgatttttctagcaaccatattactgttgaaattattgataatgttcttggtatttgga 3208817  T
Q  359 gactcaccggtta 371  Q
    |||| ||||||||    
T  3208816 gacttaccggtta 3208804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 458
Target Start/End: Original strand, 23159480 - 23159637
Alignment:
Q  301 aattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtagga 400  Q
    |||||||||||||| || ||||| |||||| || |||| |||  || |||| ||||||| || | ||| ||||| |||||||||||||||| || ||||     
T  23159480 aattattctaataaccacattaccgttgaaattgttgactctactcttggttcttggaggcttatcggctactatgggtaccccaatggggaacataggc 23159579  T
Q  401 gagctgcgtgggagtttcttcgtcagttgtctaatcaatatgcagatccttggtgtat 458  Q
     || || || ||| || ||  || | |||||| | |||||||||| ||||||||||||    
T  23159580 aagttgtgtaggatttcctctgtaacttgtctgaacaatatgcaggtccttggtgtat 23159637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 8866339 - 8866223
Alignment:
Q  57 aatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttc 156  Q
    ||||||| | |||||||||||||| || || || |||||||  | ||||| ||  || || ||||| || ||||| |||||||||| |||| |||| ||     
T  8866339 aatgagtttgatcagttggaattgtcggggcttaggtagccctaacgcaattccggacttgaaatacctggttcggcacttcaatcaggacctactattt 8866240  T
Q  157 ttaagtgagacactagt 173  Q
    |||||||||||||||||    
T  8866239 ttaagtgagacactagt 8866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 392
Target Start/End: Complemental strand, 8866194 - 8866007
Alignment:
Q  205 ttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaatt 304  Q
    ||||||||||||||||  ||| |||| |||||  ||||||  ||  |||| || ||||||||||| ||||| || ||||  ||| |    |||||  |||    
T  8866194 ttgcttggttttgattgttgtatttctgttgaccgcaccggcagcggtgggggtcttgctttattctggcgcacttctttaaatggtcaacttgtcgatt 8866095  T
Q  305 attctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatggggg 392  Q
    | || ||||||||||| ||  ||||| || |||| ||||||| |||||| |||||||| ||||| |||||||| || ||||| |||||    
T  8866094 actcaaataatcatatcactattgaaattgttgactctgttcttggtacatggagacttaccggctactacggttatcccaaaggggg 8866007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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