View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5952_low_4 (Length: 452)
Name: NF5952_low_4
Description: NF5952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5952_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 27457436 - 27457858
Alignment:
| Q |
14 |
atataataggactgagctttcacaaaagctgtggccgtaattgatcaacatcaacattatgatgtgctgtgtgcaaagcttaaattggccacttccattt |
113 |
Q |
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| T |
27457436 |
atataataggactgagctttcacaaaagctgtggccgtaattaatatacatcaacattatgatgtgctgtgtgcaaagcttaaattggccacttccattt |
27457535 |
T |
|
| Q |
114 |
gtcttgctaccaataaatttcaacatccagcaaaatcacagcattaacaaacaagtaaattcaacatctaattatcatattaaaattttccatgtgcttt |
213 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
27457536 |
gtcttgctaccaataaatttcaacatccagcaaaaccaccgcattaacaaacaagtaaattcaacgtccaattatcatattaaaattttccatgtgcttt |
27457635 |
T |
|
| Q |
214 |
aaaactcatatttgctccacaacatgcatgtggaaacaaataaggaggagnnnnnnnnnnnnnnnnntatagggcaaaatgtgggcctacaatcatcatc |
313 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27457636 |
aaaactcatattggctccacaacaagcatgtggaaacaaataaggaggagaaaacaaaaagaaaaaaaatagggcaaaatgtgggcctacaatcatcatc |
27457735 |
T |
|
| Q |
314 |
aaacagacaagtaggcgtatgtcatttttgcaaatgcattcaacatcaaaatgtgatcattcatgatccaccataccaactatattcatacttttttcat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27457736 |
aaacagacaagtaggcgtatgtcatttttgcaaatgcattcaacatcaaaatgtgatcattcatgatccaccataccaactatattcatacttttttcat |
27457835 |
T |
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| Q |
414 |
gatttaaatcttgtatgtcattt |
436 |
Q |
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| T |
27457836 |
gatttaaatcttgtatgtcattt |
27457858 |
T |
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