View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_high_11 (Length: 350)
Name: NF5953_high_11
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 31 - 339
Target Start/End: Complemental strand, 32550866 - 32550558
Alignment:
| Q |
31 |
ttttcgttcaagcaatttttgcacaagagcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgg |
130 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32550866 |
ttttcgttcaagcaatttttgcataagggcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgg |
32550767 |
T |
|
| Q |
131 |
gtcatctcaggctggtgtgaggacccctcaccatgattcagggtgagcttgagggatgtgcaattcccttctggtagttgacagctaagttaccagctcc |
230 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32550766 |
gtcatctcaggctggtgtgaggatccctcaccatgattcagggtgagcttgagggatgtgcaattcccttctggtggttgacagctaagttaccagctcc |
32550667 |
T |
|
| Q |
231 |
atataacttccctttagatttatcgccggcaacattggtccaagttcggagggtcaaaccatgatcaactgatgctccttggaaaagagcctctcaacaa |
330 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32550666 |
atataacttccctttagatttatcgccggcaacattagtccaagtttggagggtcaaaccatgatcaactgatgctccttggaaaagagcctctcaacaa |
32550567 |
T |
|
| Q |
331 |
gcttcctat |
339 |
Q |
| |
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||||||||| |
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| T |
32550566 |
gcttcctat |
32550558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 40 - 298
Target Start/End: Original strand, 40542756 - 40543015
Alignment:
| Q |
40 |
aagcaatttttgcacaagagcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctca |
139 |
Q |
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|||||| | |||||||| ||||| |||||||||||||||||| ||||||||||||| |||||| ||||||| || || | ||||||| ||||| || |
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| T |
40542756 |
aagcaaatcttgcacaacggcctcgtgactcgccatttgttgtgtgagctgctcttgagtcaatctttgaataaggtcacacatttcagaggtcagtgca |
40542855 |
T |
|
| Q |
140 |
ggctggtgtgaggacccctcaccatgattcagggtgagcttgagggatg-tgcaattcccttctggtagttgacagctaagttaccagctccatataact |
238 |
Q |
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| T |
40542856 |
ggctgttggaaggatccttcaccatgattaagggtaagtctgagagttgctgcaacacccttccggcagttagcaaccaagttaccggcaccatatagat |
40542955 |
T |
|
| Q |
239 |
tccctttagatttatcgccggcaacattggtccaagttcggagggtcaaaccatgatcaa |
298 |
Q |
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| ||||| | ||||||||| |||| |||||||||||| ||||| ||||| |||||||| |
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| T |
40542956 |
ttcctttggttttatcgccaacaactttggtccaagtttagagggccaaactatgatcaa |
40543015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 299
Target Start/End: Original strand, 7781711 - 7781952
Alignment:
| Q |
59 |
gcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccct |
158 |
Q |
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||||| || ||||||||||| || ||||||||||||| |||||| ||||||| || || ||||| ||| |||||| | ||||||| || ||||| || | |
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| T |
7781711 |
gcctcgtgtctcgccatttgctgggtgagctgctcttgagtcaatctttgaataaggtcacgcatctcaggggtcagcgcaggctgctgggaggatcctt |
7781810 |
T |
|
| Q |
159 |
caccatgattcagggtgagcttgagggatg-tgcaattcccttctggtagttgacagctaagttaccagctccatataacttccctttagatttatcgcc |
257 |
Q |
| |
|
|||||||||| ||||| | |||||| || ||||| |||||| ||||||| | || |||||||| || |||||||| || ||||| | ||||||||| |
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| T |
7781811 |
caccatgattaagggtaaatctgagggttgttgcaacacccttcaggtagttagcggccaagttaccggcaccatataattttcctttggttttatcgcc |
7781910 |
T |
|
| Q |
258 |
ggcaacattggtccaagttcggagggtcaaaccatgatcaac |
299 |
Q |
| |
|
||||| |||||||| | | |||||| ||||| ||||||||| |
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| T |
7781911 |
agcaactttggtccatggttggagggccaaactatgatcaac |
7781952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 59 - 299
Target Start/End: Original strand, 6659888 - 6660129
Alignment:
| Q |
59 |
gcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccct |
158 |
Q |
| |
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||||| || ||||||||||| || ||||||||||||| |||||| ||||||| || || ||||| ||| |||||| ||||||| || ||||| || | |
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| T |
6659888 |
gcctcatgtctcgccatttgctgggtgagctgctcttgagtcaatctttgaataaggtcacgcatctcaggggtcagtgcaggctgctgggaggatcctt |
6659987 |
T |
|
| Q |
159 |
caccatgattcagggtgagcttgagggatg-tgcaattcccttctggtagttgacagctaagttaccagctccatataacttccctttagatttatcgcc |
257 |
Q |
| |
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| |||||||| ||||| | |||||| || ||||| |||||| ||||||| | || |||||||| || |||||||| || ||||| | ||||||||| |
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| T |
6659988 |
cgccatgattaagggtaaatctgagggttgttgcaacacccttccggtagttagcggccaagttaccggcaccatataattttcctttggttttatcgcc |
6660087 |
T |
|
| Q |
258 |
ggcaacattggtccaagttcggagggtcaaaccatgatcaac |
299 |
Q |
| |
|
||||| ||||||||| || |||||| ||||| ||||||||| |
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| T |
6660088 |
agcaactttggtccaaatttggagggccaaactatgatcaac |
6660129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 7430451 - 7430576
Alignment:
| Q |
49 |
ttgcacaagagcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgt |
148 |
Q |
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||||||||| ||| | ||||||||||| || || ||| |||||||||||||||| | ||||| ||||| ||||| || | |||| ||||||||| || |
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| T |
7430451 |
ttgcacaagggccgcttgactcgccatctgctgcgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgg |
7430550 |
T |
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| Q |
149 |
gaggacccctcaccatgattcagggt |
174 |
Q |
| |
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|||| || ||||||||||| ||||| |
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| T |
7430551 |
gaggttccttcaccatgattgagggt |
7430576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 6052593 - 6052679
Alignment:
| Q |
88 |
ctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccctcaccatgattcagggt |
174 |
Q |
| |
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|||||||||||||||| | ||||| ||||| ||||| || |||||| ||||||||| || ||| | || ||||||||||| ||||| |
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| T |
6052593 |
ctgctcttgtgtcaatctatgaataagctcccgcatctctggggtcagctcaggctgctgggagaatccttcaccatgattgagggt |
6052679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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