View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_high_2 (Length: 485)
Name: NF5953_high_2
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 36351682 - 36351253
Alignment:
| Q |
18 |
gaacaaatgtatacaaaataaaataaaattataagcatagtgttacataacataataattgggatgacaaatgtactcatgattcttacattaagaatca |
117 |
Q |
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| T |
36351682 |
gaacaaatgtatacaaaataaaataaaattataagcatagtgttacataacataataattgggatgacaaatgtactcatgattcttacattaagaatca |
36351583 |
T |
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| Q |
118 |
attacattaaccatgtagtacaagtcaaatgcaaggtaagtggacctatatgtatgcactagtactgttttaaaccaaatgcaagtataaaagcaagtac |
217 |
Q |
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| T |
36351582 |
attacattaaccatgtagtacaagtcaaatgcaaggtaagtggacctatatgtatgcactagtactgttttaaaccaaatgcaagtataaaagcaagtac |
36351483 |
T |
|
| Q |
218 |
aattctatctttcctcttttcattaagtcctggctgcttaggattccaaaggatagggactgtatttttgtgccaaagaaagaatgaaaagtttagggtc |
317 |
Q |
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| T |
36351482 |
aattctatctttcctcttttcattaagtcctggctgcttaggattccaaaggatagggactgtatttttgtgccaaagaaagaatgaaaagtttagggtc |
36351383 |
T |
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| Q |
318 |
catcttacttatattttaaatggtgcaagctgaataagtaccaaacttattgaaggagacaaaacagaatgtattcgtattctattcgtttacctccaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36351382 |
catcttacttatattttaaatggtgcaagctgaataagtaccaaacttattgaaggagacaaaacagaatgtattcatattctattcgtttacctccaaa |
36351283 |
T |
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| Q |
418 |
cactccaatataggaagcatctttgcacaa |
447 |
Q |
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| T |
36351282 |
cactccaatataggaagcatctttgcacaa |
36351253 |
T |
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