View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5953_high_20 (Length: 256)

Name: NF5953_high_20
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5953_high_20
NF5953_high_20
[»] chr8 (32 HSPs)
chr8 (1-201)||(25327870-25328070)
chr8 (77-256)||(25328072-25328251)
chr8 (1-256)||(7289634-7289898)
chr8 (1-256)||(39784531-39784795)
chr8 (1-256)||(35745505-35745772)
chr8 (1-189)||(30655880-30656075)
chr8 (16-189)||(18852847-18853030)
chr8 (1-189)||(6311532-6311729)
chr8 (18-189)||(18870243-18870424)
chr8 (1-189)||(10688805-10689003)
chr8 (1-189)||(1261624-1261820)
chr8 (189-256)||(30655760-30655827)
chr8 (189-256)||(36979491-36979558)
chr8 (189-256)||(18870477-18870544)
chr8 (189-246)||(6311420-6311477)
chr8 (90-232)||(10684068-10684212)
chr8 (18-189)||(33037490-33037671)
chr8 (1-189)||(4759741-4759938)
chr8 (1-81)||(10683945-10684025)
chr8 (189-256)||(18853083-18853150)
chr8 (190-256)||(33037724-33037790)
chr8 (189-256)||(4759991-4760058)
chr8 (189-256)||(10689058-10689126)
chr8 (189-240)||(1261871-1261922)
chr8 (189-256)||(31071146-31071213)
chr8 (1-189)||(36979611-36979807)
chr8 (16-189)||(7412569-7412742)
chr8 (189-256)||(26288004-26288070)
chr8 (189-256)||(26301261-26301327)
chr8 (189-256)||(26313255-26313321)
chr8 (16-71)||(31043129-31043183)
chr8 (154-189)||(31071060-31071095)
[»] chr4 (18 HSPs)
chr4 (1-256)||(3814136-3814400)
chr4 (1-256)||(45347523-45347789)
chr4 (1-256)||(45357004-45357269)
chr4 (1-256)||(5732777-5733040)
chr4 (1-256)||(9228892-9229166)
chr4 (1-256)||(18855839-18856103)
chr4 (1-256)||(9224105-9224379)
chr4 (91-256)||(51520570-51520735)
chr4 (1-195)||(18712461-18712677)
chr4 (1-80)||(56141718-56141797)
chr4 (189-256)||(24742054-24742121)
chr4 (16-189)||(24742174-24742357)
chr4 (18-189)||(29760874-29761055)
chr4 (191-240)||(29760772-29760821)
chr4 (1-77)||(51520769-51520844)
chr4 (1-71)||(13992602-13992669)
chr4 (189-240)||(28468455-28468506)
chr4 (16-71)||(31985329-31985383)
[»] chr2 (19 HSPs)
chr2 (1-256)||(32246900-32247167)
chr2 (1-256)||(39811683-39811961)
chr2 (3-256)||(19344535-19344801)
chr2 (1-256)||(19349393-19349661)
chr2 (1-189)||(11098594-11098790)
chr2 (189-256)||(11098843-11098910)
chr2 (1-189)||(9296069-9296265)
chr2 (1-189)||(14291722-14291918)
chr2 (189-256)||(3491863-3491930)
chr2 (189-256)||(14291602-14291669)
chr2 (189-248)||(9296317-9296376)
chr2 (189-256)||(25398608-25398675)
chr2 (189-256)||(25403746-25403813)
chr2 (189-256)||(25407735-25407802)
chr2 (189-256)||(40738945-40739012)
chr2 (127-189)||(25409860-25409922)
chr2 (16-189)||(40739063-40739234)
chr2 (223-256)||(44312563-44312596)
chr2 (16-71)||(30833144-30833198)
[»] chr6 (18 HSPs)
chr6 (1-256)||(28155277-28155542)
chr6 (1-256)||(22010395-22010669)
chr6 (1-256)||(6438613-6438877)
chr6 (1-256)||(14737272-14737549)
chr6 (1-256)||(11857087-11857361)
chr6 (1-256)||(16838858-16839124)
chr6 (92-256)||(14742245-14742409)
chr6 (1-256)||(33330139-33330416)
chr6 (1-256)||(6005531-6005800)
chr6 (1-256)||(33335636-33335913)
chr6 (125-256)||(28184617-28184751)
chr6 (1-201)||(5343645-5343858)
chr6 (1-78)||(14742132-14742209)
chr6 (110-189)||(5674554-5674633)
chr6 (189-240)||(5674685-5674736)
chr6 (189-256)||(22709121-22709188)
chr6 (19-71)||(6097749-6097800)
chr6 (1-71)||(5674437-5674505)
[»] chr5 (38 HSPs)
chr5 (1-256)||(15044798-15045074)
chr5 (1-256)||(28807282-28807546)
chr5 (91-256)||(1456969-1457134)
chr5 (1-256)||(37556331-37556594)
chr5 (1-256)||(37561153-37561416)
chr5 (91-256)||(27445083-27445248)
chr5 (91-256)||(27449927-27450092)
chr5 (91-256)||(43592392-43592557)
chr5 (91-256)||(43598837-43599002)
chr5 (91-256)||(43604329-43604494)
chr5 (91-256)||(43609821-43609986)
chr5 (1-256)||(33791430-33791697)
chr5 (1-256)||(2785489-2785756)
chr5 (1-244)||(31396696-31396950)
chr5 (1-188)||(33768365-33768565)
chr5 (1-233)||(31401553-31401797)
chr5 (1-189)||(31180447-31180643)
chr5 (1-189)||(24136080-24136276)
chr5 (190-256)||(30631520-30631586)
chr5 (99-189)||(30631640-30631730)
chr5 (1-77)||(1456844-1456920)
chr5 (189-246)||(31180337-31180394)
chr5 (189-256)||(24135961-24136028)
chr5 (1-77)||(27445285-27445360)
chr5 (1-77)||(27450128-27450203)
chr5 (189-256)||(38192286-38192353)
chr5 (189-256)||(38219511-38219578)
chr5 (127-189)||(35387893-35387955)
chr5 (1-77)||(43592591-43592666)
chr5 (1-77)||(43599036-43599111)
chr5 (1-77)||(43604528-43604603)
chr5 (1-77)||(43610020-43610095)
chr5 (189-240)||(35387791-35387842)
chr5 (1-71)||(10593050-10593118)
chr5 (16-71)||(15464882-15464936)
chr5 (154-189)||(38219629-38219664)
chr5 (18-189)||(36932046-36932216)
chr5 (1-81)||(29751458-29751537)
[»] chr1 (23 HSPs)
chr1 (1-256)||(1054720-1054984)
chr1 (1-256)||(39445612-39445876)
chr1 (1-256)||(25439605-25439868)
chr1 (1-256)||(25444798-25445061)
chr1 (1-256)||(44023583-44023846)
chr1 (92-256)||(41398348-41398513)
chr1 (92-256)||(41390693-41390858)
chr1 (1-188)||(24787032-24787226)
chr1 (1-85)||(41390896-41390980)
chr1 (1-85)||(41398551-41398635)
chr1 (83-244)||(43988259-43988421)
chr1 (189-256)||(24787280-24787347)
chr1 (1-77)||(43988155-43988231)
chr1 (110-189)||(24202556-24202635)
chr1 (189-256)||(24202686-24202753)
chr1 (1-70)||(24793854-24793921)
chr1 (189-256)||(19358760-19358827)
chr1 (189-256)||(19361349-19361416)
chr1 (189-256)||(19366225-19366292)
chr1 (189-256)||(19379989-19380056)
chr1 (16-71)||(19365991-19366045)
chr1 (19-71)||(19358530-19358581)
chr1 (19-71)||(19361119-19361170)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-256)||(475-739)
[»] chr7 (31 HSPs)
chr7 (1-256)||(12397024-12397299)
chr7 (1-256)||(24024025-24024299)
chr7 (6-256)||(21811950-21812210)
chr7 (125-256)||(12406444-12406575)
chr7 (87-253)||(31109385-31109553)
chr7 (1-187)||(4873310-4873515)
chr7 (87-256)||(19992426-19992595)
chr7 (1-232)||(24261027-24261271)
chr7 (1-97)||(31109277-31109373)
chr7 (18-189)||(20357231-20357410)
chr7 (1-201)||(16880241-16880454)
chr7 (1-201)||(16885097-16885309)
chr7 (1-189)||(2058202-2058398)
chr7 (90-232)||(24266006-24266150)
chr7 (1-81)||(24265883-24265963)
chr7 (110-189)||(1533228-1533307)
chr7 (189-240)||(1533359-1533410)
chr7 (189-256)||(21639921-21639988)
chr7 (189-256)||(21646119-21646186)
chr7 (189-256)||(2058079-2058147)
chr7 (1-57)||(12406595-12406651)
chr7 (189-256)||(18408876-18408943)
chr7 (189-256)||(18413752-18413819)
chr7 (189-256)||(20357463-20357530)
chr7 (18-189)||(21640039-21640220)
chr7 (127-189)||(21646237-21646299)
chr7 (1-69)||(1533111-1533177)
chr7 (16-189)||(2479565-2479738)
chr7 (16-81)||(24789647-24789712)
chr7 (154-189)||(18408993-18409028)
chr7 (19-71)||(48408605-48408656)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-256)||(34760-35034)
[»] chr3 (37 HSPs)
chr3 (1-256)||(18656547-18656822)
chr3 (99-256)||(22173010-22173167)
chr3 (1-256)||(2676781-2677058)
chr3 (1-256)||(2672625-2672902)
chr3 (1-189)||(28503525-28503727)
chr3 (90-256)||(24968221-24968388)
chr3 (3-189)||(28501360-28501560)
chr3 (1-201)||(32475652-32475865)
chr3 (16-189)||(8738743-8738926)
chr3 (1-201)||(32480510-32480723)
chr3 (16-189)||(9090981-9091164)
chr3 (15-87)||(22172901-22172973)
chr3 (189-256)||(7167358-7167425)
chr3 (1-80)||(24968419-24968498)
chr3 (189-256)||(28501613-28501680)
chr3 (189-256)||(28503780-28503847)
chr3 (90-232)||(8512354-8512498)
chr3 (90-232)||(8517234-8517378)
chr3 (1-81)||(8512541-8512621)
chr3 (1-81)||(8517421-8517501)
chr3 (16-189)||(40372476-40372659)
chr3 (18-189)||(2671268-2671449)
chr3 (18-189)||(7167478-7167660)
chr3 (127-189)||(8477598-8477660)
chr3 (189-256)||(26928507-26928574)
chr3 (189-240)||(8477493-8477545)
chr3 (189-256)||(2671502-2671569)
chr3 (189-256)||(32143434-32143501)
chr3 (189-256)||(40372712-40372779)
chr3 (192-256)||(8738982-8739046)
chr3 (192-256)||(9091220-9091284)
chr3 (189-256)||(1306061-1306128)
chr3 (154-189)||(1306179-1306214)
chr3 (16-71)||(1306308-1306362)
chr3 (16-71)||(23198253-23198307)
chr3 (16-71)||(27352301-27352356)
chr3 (189-256)||(27453071-27453138)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-256)||(3543-3820)
scaffold0355 (154-256)||(9514-9615)
[»] scaffold0197 (3 HSPs)
scaffold0197 (1-244)||(18870-19124)
scaffold0197 (90-232)||(14113-14257)
scaffold0197 (1-81)||(13990-14070)
[»] scaffold0259 (2 HSPs)
scaffold0259 (1-81)||(1945-2025)
scaffold0259 (90-233)||(2055-2200)
[»] scaffold0028 (2 HSPs)
scaffold0028 (1-81)||(148650-148730)
scaffold0028 (90-233)||(148760-148905)
[»] scaffold0009 (2 HSPs)
scaffold0009 (90-232)||(176781-176925)
scaffold0009 (1-81)||(176656-176736)
[»] scaffold0188 (4 HSPs)
scaffold0188 (127-189)||(17756-17818)
scaffold0188 (127-189)||(23849-23911)
scaffold0188 (189-256)||(17869-17936)
scaffold0188 (189-256)||(23962-24029)
[»] scaffold1519 (1 HSPs)
scaffold1519 (16-71)||(705-759)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 25327870 - 25328070
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaagagagaaaa 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||    
T  25327870 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagaagaacttaagagagagaa 25327969  T
Q  101 cttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggttttagggttca 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25327970 cttggagatcaaaggagggatcctatgggttgtgtgtctttgatgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggttttagggttca 25328069  T
Q  201 t 201  Q
    |    
T  25328070 t 25328070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 77 - 256
Target Start/End: Original strand, 25328072 - 25328251
Alignment:
Q  77 tgaagtagaacttaagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgt 176  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25328072 tgaagaagaacttaagagagagaacttggagatcaaaggagggatcctatgggttgtgtgtctttgatgagagtgtctcttgggttgggaaaaacattgt 25328171  T
Q  177 aatcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25328172 aatcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 25328251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 7289634 - 7289898
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------a 91  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||  ||| |||          |    
T  7289634 cgtgacacgatcttgggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaaagagagcttggaagagctta 7289733  T
Q  92 gagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggttt 191  Q
    |||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7289734 gagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggttt 7289833  T
Q  192 tagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7289834 tagggttcatattgtgagagtggggaaacaccaaagggtagaatatagggtttgttcatgtgtaa 7289898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 39784531 - 39784795
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||           ||| ||||    
T  39784531 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagagaaccttaagagagctta 39784630  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||||| |||||| |||||| |||||||||||| || |||| |||||||||||||||||||||||||||||| |    
T  39784631 agagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtctcttaggttgggaaaaacattgtaatcaccttgggat 39784730  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    || ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  39784731 tttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 39784795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 35745772 - 35745505
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||| ||           ||| ||||    
T  35745772 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataaccttaagagagctta 35745673  T
Q  91 agagagaaaacttggagatcaaaggaggg-atcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaa--acattgtaatcaccttgg 187  Q
    ||||||||||||||||||||||||  ||| ||| | |||| |||||  |||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  35745672 agagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgg 35745573  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    | ||  ||||||||  |||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  35745572 gattatgggttcatagtgtgagggtgggaaaataccaaagggtag-gtctagggtttgttcatgtgtaa 35745505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 30656075 - 30655880
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactt--aagag---- 94  Q
    |||||||||||||  |||||||||||||||||| | |||| |||||||||||||||| |||||||||||| |||||||||| ||| |||  |||||        
T  30656075 cgtgacacgatct--ggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgtttttttgaaggagagcttggaagagctta 30655978  T
Q  95 ---agaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
       ||| |||||||| | ||||||||||| |  | |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  30655977 aagagagaacttggataacaaaggagggaaccaaagggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 30655880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 18852847 - 18853030
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------agagaga-aaacttgg 105  Q
    |||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||| ||| |||          ||||||| ||||||||    
T  18852847 ggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttttgaaggagagcttggaagagcttagagagagaaacttgg 18852946  T
Q  106 agatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    | | ||||||||||| |  | |||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  18852947 ataacaaaggagggaaccaaagggttgagtgtctttgttgagagtgtctcttgggttgggaaaaatattgtaatcaccttgggt 18853030  T

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Target: chr8; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 6311729 - 6311532
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------a 91  Q
    |||||||||||   ||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||||||||||   ||| |||          |    
T  6311729 cgtgacacgattgtgggaaatcgtggcacaatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgagagagagcttggaagagctta 6311630  T
Q  92 gagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||| | |||||||| | ||||||||||| |  | |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  6311629 gagatagaacttggatagcaaaggagggaaccaaagggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 6311532  T

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Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 18870243 - 18870424
Alignment:
Q  18 aaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------agagaga-aaacttggag 107  Q
    |||||||||||||||| | |||| | |||||||||||||| ||||||||||||||||||||||| ||| |||          ||||||| |||| ||||     
T  18870243 aaatcgtggcacgattgcttcagagaaagactagtatatattgtgttcttgtgcttttttgaaggagagcttggaagagcttagagagagaaacatggat 18870342  T
Q  108 atcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    | ||||||||||| |  | |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  18870343 aacaaaggagggaaccaaagggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 18870424  T

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Target: chr8; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 10688805 - 10689003
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactt---------aa 91  Q
    |||||||||||   ||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||  |||||||  ||| |||         ||    
T  10688805 cgtgacacgattgtgggaaatcgtggcacaatttcttcagaggaagactagtatatattgtgttcttgtgcagttttgaaagagagcttggaagagctaa 10688904  T
Q  92 gagaga-aaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    || ||| ||||||||| | ||||||||||| |  | |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  10688905 gaaagagaaacttggataacaaaggagggaaccaaagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 10689003  T

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Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 1261624 - 1261820
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaact---------taa 91  Q
    |||||||||||||  |||||||||| |||||||| ||||| ||||| ||||||| ||| |||||||||||||||||||||| ||| ||         | |    
T  1261624 cgtgacacgatct--ggaaatcgtgacacgattttatcagaggaaggctagtatttaaagtgttcttgtgcttttttgaaggagagcttggaagagctta 1261721  T
Q  92 gagaga-aaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| |||||||||   ||||||||||| |    |||||| |||||||||  ||||| || ||||||||||||||||||||||||||||||||||||    
T  1261722 gagagagaaacttggattacaaaggagggaactctagggttgagtgtctttgtagagagggtctcttgggttgggaaaaacattgtaatcaccttgggt 1261820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 30655827 - 30655760
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30655827 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaa 30655760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 36979558 - 36979491
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36979558 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaa 36979491  T

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Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 18870477 - 18870544
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  18870477 ttttagggttcatattgtgagagtggggaaataccaaagggtagaatctagggtttgttcttgtgtaa 18870544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 6311477 - 6311420
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgt 246  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6311477 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtttgt 6311420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 10684068 - 10684212
Alignment:
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    |||||||| ||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  10684068 aagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgg 10684167  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtag 232  Q
    | ||  ||||||||  ||||||  |||| ||  ||||||||||||    
T  10684168 gattatgggttcatagtgtgaggttgggaaattaccaaagggtag 10684212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 33037490 - 33037671
Alignment:
Q  18 aaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------agagaga-aaacttggag 107  Q
    |||||||| ||||||| | ||||  | ||||||||||||| ||||||||||||||||||||||| ||| |||          ||||||| |||||||||     
T  33037490 aaatcgtgacacgattgcttcagaaggagactagtatatattgtgttcttgtgcttttttgaaggagagcttggaagagcttagagagagaaacttggat 33037589  T
Q  108 atcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
      ||||||||||| |  | |||||| ||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||    
T  33037590 tacaaaggagggaaccaaagggttgagtgtcttcgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 33037671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 4759741 - 4759938
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaact---------taa 91  Q
    |||||||||||||  |||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||| ||||||| ||| ||         | |    
T  4759741 cgtgacacgatct--ggaaatcgtgacacgatttcttcagaggaagactagtatatattgtgttcttgtgcttgtttgaaggagagcttggaagagctta 4759838  T
Q  92 gagaga-aaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttggg-aaaaacattgtaatcaccttgggt 189  Q
    |||||| || ||||||   ||||||||| | |  | |||||| |||||||||  ||||| || |||||||||||| ||||||||||||||||||||||||    
T  4759839 gagagagaatcttggattgcaaaggaggtaaccaaagggttgagtgtctttgtagagagagtctcttgggttgggaaaaaacattgtaatcaccttgggt 4759938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 10683945 - 10684025
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||||||| ||| ||||||||||||| ||||||||    
T  10683945 cgtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaag 10684025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 18853083 - 18853150
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  18853083 ttttagggttcatattgtgagagtggggaaataccaaagggtaaaatctagggtttgttcttgtgtaa 18853150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 33037724 - 33037790
Alignment:
Q  190 tttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||| ||||||||||||||||||||  | |||||||||||||||||||||| |||||||    
T  33037724 tttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggtttgttcttgtgtaa 33037790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 4759991 - 4760058
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||||||||||||||||||||  | ||||||||||||||| |||||| |||||||    
T  4759991 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaa 4760058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 10689058 - 10689126
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacacca-aagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||||||||||||||||||| || | ||||||||||||||| |||||| |||||||    
T  10689058 ttttagggttcatattgtgagagtggggaaacaacatatgggtagaatctagggcttgttcttgtgtaa 10689126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 1261871 - 1261922
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagg 240  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||||||    
T  1261871 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctagg 1261922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 31071146 - 31071213
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| |||||  |||||| |||||||    
T  31071146 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaa 31071213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 36979807 - 36979611
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtg--cttttttgaagtagaact---------t 89  Q
    |||||||||||||  |||||||||||||||||| | |||| ||||| ||||||| ||| |||||||||||  |||||||| || ||| ||         |    
T  36979807 cgtgacacgatct--ggaaatcgtggcacgattgcttcagaggaaggctagtatttaa-gtgttcttgtgttcttttttggagaagagcttggaagagct 36979711  T
Q  90 aagagaga-aaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttggg 188  Q
     ||||||| |||||||||   ||||| ||||| |  | |||||| |||||||||  |||||||| |||| ||||||| ||||||||||||||||||||||    
T  36979710 tagagagagaaacttggattacaaagaagggaaccaaagggttgagtgtctttgtagagagtgtctcttaggttggg-aaaacattgtaatcaccttggg 36979612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 7412742 - 7412569
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc-ttttttgaagtagaactt-aagagaga-aaacttggagatcaa 112  Q
    ||||| ||||||||||||| |||||  |||||||  ||||||| ||||||||||||   |||||||| ||| ||| |||||||| |||||||||   |||    
T  7412742 ggaaaacgtggcacgattttatcagctgaagactgctatataa-gtgttcttgtgcagattttgaaggagagcttgaagagagagaaacttggattacaa 7412644  T
Q  113 aggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| | | |  |||||| |||||||||  |||||  | ||||||||||||  ||||||||||| ||||||||||    
T  7412643 aggaggtaactttagggttgagtgtctttgtagagaggatctcttgggttggg--aaacattgtaaacaccttgggt 7412569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 26288070 - 26288004
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||| ||||| || |||||||| |||||  |||||| |||||||    
T  26288070 ttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactaggacttgttcttgtgtaa 26288004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 26301327 - 26301261
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||| ||||| || |||||||| |||||  |||||| |||||||    
T  26301327 ttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactaggacttgttcttgtgtaa 26301261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 26313321 - 26313255
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||| ||||| || |||||||| |||||  |||||| |||||||    
T  26313321 ttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactaggacttgttcttgtgtaa 26313255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 31043129 - 31043183
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    |||||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  31043129 ggaaatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 31043183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 31071060 - 31071095
Alignment:
Q  154 tcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31071060 tcttgggttgggaaaaacattgtaaacaccttgggt 31071095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3814400 - 3814136
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||           ||| ||||    
T  3814400 cgtgacaagatctagggaaatcgtgacacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagacaaccttaggagagctta 3814301  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    |||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3814300 agagagaaaacttggacatcaaaggagggatcctatggggtgtgtgtctttgatgagagtgtttcttaggttgggaaaaacattgtaatcaccttgggtt 3814201  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||  |||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  3814200 ttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 3814136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 45347523 - 45347789
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||           ||| ||||    
T  45347523 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaaaactagtatatattgtgttcttgtgcttttttgaagacaaccttaagagagctta 45347622  T
Q  91 agagagaaaa-cttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||||||| ||||||||||||||  |||||| |||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||     
T  45347623 agagagaaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagtgtctcttaggttgggaaaaacattgtaatcaccttgggg 45347722  T
Q  190 tttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  45347723 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaa 45347789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 45357004 - 45357269
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||||||||||||||||||||           ||| ||||    
T  45357004 cgtgacacgatctagggaaatcgtgacacgatttcttctggggaggactagtatatattgtgttcttgtgcttttttgaagacaaccttaagagagctta 45357103  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||||| |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  45357104 agagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaaaacattgtaatcaccttggggt 45357203  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  45357204 ttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaa 45357269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 5733040 - 5732777
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||||           ||| ||||    
T  5733040 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactagtatatattgtgttcttgtg-ttttttgaagacaaccttaagagagctta 5732942  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||||||||||||||||||  |||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  5732941 agagagaaaacttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagtgtttcttaggttgggaaaaacattgtaatcaccttgggat 5732842  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    | |||||| ||  |||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  5732841 taagggtttatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 5732777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 9228892 - 9229166
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaagagag---- 96  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||  | ||||||||||        
T  9228892 cgtgacacgatctagggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaagtgaatcttaagagagcttg 9228991  T
Q  97 ---------------aaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatca 181  Q
                   | |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||| || |||||||||||||||    
T  9228992 tatgagcttagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaacattgtaatca 9229091  T
Q  182 ccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9229092 ccttgggttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaa 9229166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 18856103 - 18855839
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||           ||| ||||    
T  18856103 cgtgacatgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagacaaccttaagagagctta 18856004  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||| | |||||| ||| || |||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  18856003 agagagaaatcttggagatcaaagaggggagcctatggggtgtttgcctttgatgagagagtttcttaggttgggaaaaacattgtaatcaccttgggat 18855904  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |  ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  18855903 tgtgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 18855839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 9224105 - 9224379
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaagagag---- 96  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||| ||||||||| ||||||||||||||  | ||||||||||        
T  9224105 cgtgacacgatctagggaaatcgtggcacaatttcttcagaggaagactagtatatattgtgttcttctgcttttttgaagtgaatcttaagagagcttg 9224204  T
Q  97 ---------------aaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatca 181  Q
                   | |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||| || |||||||||||||||    
T  9224205 tatgagcttagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaacattgtaatca 9224304  T
Q  182 ccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9224305 ccttgggttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaa 9224379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 51520735 - 51520570
Alignment:
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||| |||||||| |  |||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  51520735 agagagagaacttggatagaaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 51520636  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51520635 ttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 51520570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 18712461 - 18712677
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt-------------agaac 87  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||             |||||    
T  18712461 cgtgacacaatctaggaaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagtaagacttaagagaagaac 18712560  T
Q  88 ttaag---------agagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaa 178  Q
    |||||         ||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |    
T  18712561 ttaagagagcttttagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtta 18712660  T
Q  179 tcaccttgggttttagg 195  Q
    |||||||||||||||||    
T  18712661 tcaccttgggttttagg 18712677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 56141718 - 56141797
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaa 80  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  56141718 cgtgacacgatcttgggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaa 56141797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 24742121 - 24742054
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24742121 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaa 24742054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 24742357 - 24742174
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------agagaga-aaacttgg 105  Q
    |||||||||| ||||||||| |||| |||||||||||||||| |||||||||||||   |||| || ||| |||          ||||||| ||||||||    
T  24742357 ggaaatcgtgacacgatttcttcagaggaagactagtatatattgtgttcttgtgcagatttgtaggagagcttggaagagcttagagagagaaacttgg 24742258  T
Q  106 agatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |   ||||||||||| |  | |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  24742257 attacaaaggagggaaccaaagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 24742174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 29761055 - 29760874
Alignment:
Q  18 aaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttg---------aagtagaactta-agagagaaaacttggag 107  Q
    |||||||||||||||||| |||| |||||||||||||||| |||||||||||||   ||||           | |||||||| || ||| |||||||||     
T  29761055 aaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcagatttggggagagcttggaagaacttagagtgag-aaacttggat 29760957  T
Q  108 atcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttggg-aaaaacattgtaatcaccttgggt 189  Q
      ||||||||||| |  | |||||| |||||||||  |||||||| |||||||||||| ||||||||||||||||||||||||    
T  29760956 tacaaaggagggaaccaaagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaaacattgtaatcaccttgggt 29760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 29760821 - 29760772
Alignment:
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagg 240  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  29760821 ttagggttcatagtgtgagagtggggaaacaccaaagggtagaatctagg 29760772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 51520844 - 51520769
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt 77  Q
    ||||||||||| | ||||||||||||||| ||| | |||| ||||| |||||||||| |||||||||||||||||||    
T  51520844 cgtgacacgattt-gggaaatcgtggcacaattgcttcagaggaaggctagtatatattgtgttcttgtgctttttt 51520769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 13992669 - 13992602
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    |||||||||||||  |||||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  13992669 cgtgacacgatct--ggaaatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 13992602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 28468455 - 28468506
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagg 240  Q
    ||||||||||||| ||| |||||||||||||||| || ||||||||||||||    
T  28468455 ttttagggttcatattgagagagtggggaaacacaaatgggtagaatctagg 28468506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 31985329 - 31985383
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    ||||||||||||||||||| |||||  |||||||||||| ||| ||||||||||||    
T  31985329 ggaaatcgtggcacgattttatcagttgaagactagtatttaa-gtgttcttgtgc 31985383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 32247167 - 32246900
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc--ttttttgaagt----------agaact 88  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||  ||||||||||           ||||||    
T  32247167 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactagtatatattgtgttcttgtgcctttttttgaagataaccttaagagaact 32247068  T
Q  89 taagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttggg 188  Q
    ||||||||||||||||||||||||||  ||| || |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32247067 taagagagaaaacttggagatcaaagagggggtcctatggggtgtgtgcctttgatgagagtgtttcttaggttgggaaaaacattgtaatcaccttggg 32246968  T
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
     ||||||||||||  |||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  32246967 atttagggttcatagtgtgagagtgggaaaataccaaagggtataatctagggtttgttcatgtgtaa 32246900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 39811683 - 39811961
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaagaga----- 95  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||         
T  39811683 cgtgacacgatctagggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaagtaggacttaagagagagct 39811782  T
Q  96 -----------------gaaaacttggagatcaaaggagggatc-atatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgta 177  Q
                     || |||||||| | ||||||||||| | | |||||||| ||||||||| ||||||||| |||| ||||| |||||||||||||    
T  39811783 tgtatgagctttgtacagagaacttggatagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttaggttgagaaaaacattgta 39811882  T
Q  178 atcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  39811883 atcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaa 39811961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 19344801 - 19344535
Alignment:
Q  3 tgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaacttaag 92  Q
    ||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||| ||           ||| ||||||    
T  19344801 tgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataaccttaagagagcttaag 19344702  T
Q  93 agagaaaacttggagatcaaaggaggg-atcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaaca---ttgtaatcaccttggg 188  Q
    ||||||||||||||||||||||  ||| ||| | |||| |||||  |||||||||||||||||||| ||||||||||||||   ||||||||||||||||    
T  19344701 agagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaaacaacattgtaatcaccttggg 19344602  T
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
     ||  ||||||||  |||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  19344601 attatgggttcatagtgtgagggtgggaaaataccaaagggtag-gtctagggtttgttcatgtgtaa 19344535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 19349661 - 19349393
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||| ||           ||| ||||    
T  19349661 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataaccttaagagagctta 19349562  T
Q  91 agagagaaaacttggagatcaaaggaggg-atcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaaca---ttgtaatcaccttg 186  Q
    ||||||||||||| ||||||||||  ||| ||| | |||| |||||  |||||||||||||||||||| ||||||||||||||   ||||||||||||||    
T  19349561 agagagaaaacttagagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaaacaacattgtaatcaccttg 19349462  T
Q  187 ggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    || ||  ||||||||  |||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  19349461 ggattatgggttcatagtgtgagggtgggaaaataccaaagggtag-gtctagggtttgttcatgtgtaa 19349393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 11098594 - 11098790
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------a 91  Q
    |||||||||||||  |||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||   |||| || ||| |||          |    
T  11098594 cgtgacacgatct--ggaaatcgtggcacgatttcttcagaggaagactagcatatattgtgttcttgtgcagatttgtagaagagcttggaagagctta 11098691  T
Q  92 gagaga-aaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| |||||||||   ||||||||||| |  | |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  11098692 gagagagaaacttggattacaaaggagggaaccaaagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 11098790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 11098843 - 11098910
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11098843 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgtaa 11098910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 9296069 - 9296265
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------a 91  Q
    |||||||||||||  | |||||||| ||||||| | |||| ||||||||||||| ||| ||||||||||||||||||| || ||| |||          |    
T  9296069 cgtgacacgatct--gaaaatcgtgacacgattgcttcagaggaagactagtatttaaagtgttcttgtgcttttttggaggagagcttggaagagctta 9296166  T
Q  92 gagagaaaa-cttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||||||| ||||||   ||||||||||| |  | |||||| |||||||||  || ||||| | ||||||||||||||||||||||||||||||||||    
T  9296167 gagagaaaaacttggattacaaaggagggaaccaaagggttgagtgtctttgtagaaagtgtctattgggttgggaaaaacattgtaatcaccttgggt 9296265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 14291918 - 14291722
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc--ttttttga--------agtagaactta 90  Q
    |||||||||||||  |||||||||||||||||||| |||| |||||||||||||||| |||||||||||||   |||| ||         | ||| ||||    
T  14291918 cgtgacacgatct--ggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcagattttagagagagcttggaagagctta 14291821  T
Q  91 -agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
     |||||| |||||||||   ||||||||||| |  | |||||| | |||||||  || ||||| ||||||||||||||||||||||||||||||||||||    
T  14291820 gagagag-aaacttggattacaaaggagggaaccaaagggttgagcgtctttgtagatagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 14291722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 3491930 - 3491863
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  3491930 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 3491863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 14291669 - 14291602
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||||||||||||||||||||  | ||||||||||||||| |||||| |||||||    
T  14291669 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaa 14291602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 9296317 - 9296376
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttc 248  Q
    ||||||||||||| ||||||||||||||||||||  | ||||||||||||||| ||||||    
T  9296317 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttc 9296376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 25398675 - 25398608
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||| ||||||| || |||||||| |||||  |||||| |||||||    
T  25398675 ttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgtgtaa 25398608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 25403813 - 25403746
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||| ||||||| || |||||||| |||||  |||||| |||||||    
T  25403813 ttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgtgtaa 25403746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 25407802 - 25407735
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||| ||||||| || |||||||| |||||  |||||| |||||||    
T  25407802 ttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgtgtaa 25407735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 40739012 - 40738945
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| ||| |  |||||| |||||||    
T  40739012 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaagacttgttcttgtgtaa 40738945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 25409922 - 25409860
Alignment:
Q  127 gggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| |||||||||  |||||  | ||||||||||||||||||||||||| ||||||||||    
T  25409922 gggttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaaacaccttgggt 25409860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 40739234 - 40739063
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc--ttttttgaagtagaacttaagagagaaaacttggagatcaaa 113  Q
    |||||||||| |||||||| |||||  ||||||| |||| ||| ||||||||||||  ||||||| ||||||  | |||||||||| ||||||   ||||    
T  40739234 ggaaatcgtgacacgattttatcagttgaagacttgtatttaa-gtgttcttgtgcagttttttggagtagagttgaagagagaaa-cttggattacaaa 40739137  T
Q  114 ggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||||| |    |||||| |||||||||  | |||  | |||||||||||||||  |||||||| ||||||||||    
T  40739136 ggagggaactctagggttgagtgtctttgtagtgaggatctcttgggttgggaaa--cattgtaaacaccttgggt 40739063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 44312563 - 44312596
Alignment:
Q  223 caaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||||||||||||||||    
T  44312563 caaagggtagaatctagggtttgttcatgtgtaa 44312596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 30833144 - 30833198
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    |||||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  30833144 ggaaatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 30833198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 28155277 - 28155542
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagta-----------gaactt 89  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||  |           ||||||    
T  28155277 cgtgacacgatctagggaaatcgtgacacgatttcttcaggggaggactagtatatattgtgttcttgtgcttttttgaaaaaaaaccttaagagaactt 28155376  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||||||||||||||||||||||  |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  28155377 aagagagaaaacttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagtgtttcttaggttgggaaaaacattgtaatcaccttggga 28155476  T
Q  190 tttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||  |||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  28155477 tttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 28155542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 22010395 - 22010669
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaagagag---- 96  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||||        
T  22010395 cgtgacacgatctagggaaatcgtggcacgatttcttcagagggagactagtatatattgtgttcttgtgcttttttgaagaagaacttaagagagcttg 22010494  T
Q  97 ---------------aaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatca 181  Q
                   | |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  22010495 tatgagcttagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatca 22010594  T
Q  182 ccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  22010595 ccttgggttttagggttcatattgtgagagtggggaaatatcaaagggtagaatctagggtttgttcatgtgtaa 22010669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 6438877 - 6438613
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||| |||||||||||||||||||||||           ||| ||||    
T  6438877 cgtgacacgatctagggaaatcgtgacacgatttcttcagggaaggactagtatatattgtgttcttgtgcttttttgaagacaaccttaagagagctta 6438778  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||||| |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  6438777 agagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaaaacattgtaatcaccttgggat 6438678  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    || ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  6438677 tttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 6438613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 14737272 - 14737549
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagta---gaacttaagagag- 96  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |   |||||||||||||     
T  14737272 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttggagaaagagaacttaagagagc 14737371  T
Q  97 ------------------aaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaa 178  Q
                      | |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  14737372 ttgtatgagctttgagagagaacttggataacaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaa 14737471  T
Q  179 tcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||||||||||| |||||    
T  14737472 tcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaa 14737549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 11857361 - 11857087
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt-gaagtagaacttaaga------ 93  Q
    ||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||    | |||||||||||          
T  11857361 cgtgacacgattt-gggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttactgggagaacttaagagagctt 11857263  T
Q  94 -------------gagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatc 180  Q
                 |||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  11857262 gaatgagcttagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatc 11857163  T
Q  181 accttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11857162 accttgggttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 11857087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 16839124 - 16838858
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||| ||||||||||||||||||| ||           ||| ||||    
T  16839124 cgtgacacgatctagggaaatcgtgacacgatttcttcagggcaggactagtatataaagtgttcttgtgcttttttggagagaaccttgagagagctta 16839025  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttggg 188  Q
    ||||||||||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  ||||||||||||||||||||    
T  16839024 agagagaaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttggg 16838925  T
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
     ||||||||||||  ||||||  |||| ||| |||||||||||| |||||||||||||||||||||||    
T  16838924 atttagggttcatagtgtgaggatgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 16838858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 92 - 256
Target Start/End: Original strand, 14742245 - 14742409
Alignment:
Q  92 gagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggttt 191  Q
    |||||| |||||||| | ||||||||||| |  |||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  14742245 gagagagaacttggataacaaaggagggaaccaatgggttaagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcactttgggttt 14742344  T
Q  192 tagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||  |||||||||||| ||| |||||||||||||||||||||||||||||| |||||    
T  14742345 tagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaa 14742409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33330139 - 33330416
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt------------------ 82  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||||||                       
T  33330139 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaacctt 33330238  T
Q  83 ---agaacttaagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgta 177  Q
       ||||||||||||||||||||||||||||||||  |||||| | |||| |||||  |||||||||||||||||||| ||||||||||  |||||||||    
T  33330239 gagagaacttaagagagaaaacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgta 33330338  T
Q  178 atcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||||||||||||  ||||||  |||| ||| |||||||||||| |||||||||||  ||||||||||    
T  33330339 atcaccttgggatttagggttcatagtgtgaggatgggaaaataccaaagggtag-atctagggttttgtcatgtgtaa 33330416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 6005800 - 6005531
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt--gaagta----------gaact 88  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||  |||  |          || ||    
T  6005800 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgctttttttggaaaaaaaccttaagagagct 6005701  T
Q  89 taagagagaaaacttggagatcaaaggaggg-atcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaa--acattgtaatcacctt 185  Q
    ||||||||||||||||||||||||||  ||| ||| | |||| |||||  |||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  6005700 taagagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcacctt 6005601  T
Q  186 gggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||| ||  ||||||||  |||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  6005600 gggattatgggttcatagtgtgagggtgggaaaataccaaagggtag-gtctagggtttgttcatgtgtaa 6005531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33335636 - 33335913
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt------------------ 82  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| |||||| |||||||||||||||                       
T  33335636 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcatgtgcttttttgaagacaaccttaagacaacctt 33335735  T
Q  83 ---agaacttaagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgta 177  Q
       ||||||||||||||||||||||||||||||||  |||||| | |||| |||||  |||||||||||||||||||| ||||||||||  |||||||||    
T  33335736 gagagaacttaagagagaaaacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgta 33335835  T
Q  178 atcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||||||||||||  ||||||  |||| ||| |||||||||||| |||||||||||  ||||||||||    
T  33335836 atcaccttgggatttagggttcatagtgtgaggatgggaaaataccaaagggtag-atctagggttttgtcatgtgtaa 33335913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 125 - 256
Target Start/End: Complemental strand, 28184751 - 28184617
Alignment:
Q  125 atgggttgtgtgtctttgatgagagtgtttcttgggttggg---aaaaacattgtaatcaccttgggttttagggttcatgttgtgagagtggggaaaca 221  Q
    |||||||| | ||||||| ||||||||| ||||||||| ||   |||||||| |||||||||||||||||||||||||||  |||||||||||| ||| |    
T  28184751 atgggttgagggtctttgttgagagtgtctcttgggtttgggaaaaaaacatagtaatcaccttgggttttagggttcatagtgtgagagtgggaaaata 28184652  T
Q  222 ccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||||||||||||||||||||||||||    
T  28184651 ccaaagggtagaatctagggtttgttcatgtgtaa 28184617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 5343858 - 5343645
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt-----------agaactt 89  Q
    ||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||| |||||||||||||  |||||||            |||||||    
T  5343858 cgtgacacgatctagggaaatcgtggcacgatttcttcagggctggactagtatataaagtgttcttgtgctcatttgaaggttaaccttgagagaactt 5343759  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    ||||||||||||||||| |||||||  |||||| | |||| |||||  ||||||||||||||  |||| ||||||||||  |||||||||||||||||||    
T  5343758 aagagagaaaacttggatatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaatcaccttgg 5343659  T
Q  188 gttttagggttcat 201  Q
    | ||  ||||||||    
T  5343658 gattatgggttcat 5343645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 14742132 - 14742209
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttg 78  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  14742132 cgtgacacgatctaaggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttg 14742209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 5674554 - 5674633
Alignment:
Q  110 caaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||||||||| |  | |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  5674554 caaaggagggaaccaaagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 5674633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 5674685 - 5674736
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagg 240  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5674685 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagg 5674736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 22709188 - 22709121
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| |||||  |||||| |||||||    
T  22709188 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaa 22709121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 6097800 - 6097749
Alignment:
Q  19 aatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    ||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||    
T  6097800 aatcgtgacacgattttatcaggggaagactagtatttaa-gtgttcttgtgc 6097749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5674437 - 5674505
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    |||||||||||||  |||||||||| |||||||  ||||| ||||| ||||||| ||| ||||||||||||    
T  5674437 cgtgacacgatct--ggaaatcgtgacacgattgtatcagaggaaggctagtatttaaagtgttcttgtgc 5674505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 15045074 - 15044798
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaagagag---- 96  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||        
T  15045074 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagaagaacttaagagagcttg 15044975  T
Q  97 ----------------aaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggtt-gggaaaaacattgtaat 179  Q
                    | |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  15044974 tatgagctttgtagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaat 15044875  T
Q  180 caccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  15044874 caccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaa 15044798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 28807282 - 28807546
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| | |||||||||||||||||||||           ||| ||||    
T  28807282 cgtgacacgatctagggaactcgtggcacgatttcttcagggcaggactagtatatattatgttcttgtgcttttttgaagagaaccttaagagagctta 28807381  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||||||||||||||||||  |||||| | |||| |||||  |||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  28807382 agagagaaaacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaaacattgtaatcaccttgggat 28807481  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    || ||||||||  |||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  28807482 tttgggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 28807546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 91 - 256
Target Start/End: Original strand, 1456969 - 1457134
Alignment:
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  1456969 agagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 1457068  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1457069 ttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 1457134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 37556331 - 37556594
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaac-----------tt 89  Q
    |||||||||||||||||||||| |||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||| |||||           ||    
T  37556331 cgtgacacgatctagggaaatcatggcacgatttcttcagggcaggactagtatatattgtgttcttgtgcttttttgaag-agaaccttaagatggctt 37556429  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||||||||||||||||||||||  |||||| |||||| |||||  |||||||| ||||||||||| ||||||| ||||||||||||||||||||||     
T  37556430 aagagagaaaacttggagatcaaagaggggatcctatggggtgtgttcctttgatgtgagtgtttcttaggttggg-aaaacattgtaatcaccttggga 37556528  T
Q  190 tttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||| ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  37556529 ttttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 37556594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 37561153 - 37561416
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaac-----------tt 89  Q
    ||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||| |||||           ||    
T  37561153 cgtgacatgatctagggaaatcgtggcacgatttcttcagggcaggactagtatatattgtgttcttgtgcttttttgaag-agaaccttaagatggctt 37561251  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||||||||||||||||||||||  |||||| |||||| |||||  |||||||| ||||||||||| ||||||| ||||||||||||||||||||||     
T  37561252 aagagagaaaacttggagatcaaagaggggatcctatggggtgtgttcctttgatgtgagtgtttcttaggttggg-aaaacattgtaatcaccttggga 37561350  T
Q  190 tttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||| ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  37561351 ttttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 37561416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 27445248 - 27445083
Alignment:
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  27445248 agagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 27445149  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27445148 ttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 27445083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 27450092 - 27449927
Alignment:
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  27450092 agagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 27449993  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27449992 ttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 27449927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 43592557 - 43592392
Alignment:
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  43592557 agagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 43592458  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43592457 ttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 43592392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 43599002 - 43598837
Alignment:
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  43599002 agagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 43598903  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43598902 ttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 43598837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 43604494 - 43604329
Alignment:
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  43604494 agagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 43604395  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43604394 ttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 43604329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 43609986 - 43609821
Alignment:
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  43609986 agagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 43609887  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43609886 ttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 43609821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 33791697 - 33791430
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||| ||           ||| ||||    
T  33791697 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataaccttaagagagctta 33791598  T
Q  91 agagagaaaacttggagatcaaaggaggg-atcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaa--acattgtaatcaccttgg 187  Q
    ||||||||||||||||||||||||  ||| ||| | |||| |||||  |||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  33791597 agagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgg 33791498  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    | ||  ||||||||  |||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  33791497 gattatgggttcatagtgtgagggtgggaaaataccaaagggtag-gtctagggtttgttcatgtgtaa 33791430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 2785756 - 2785489
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||| ||           ||| ||||    
T  2785756 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataaccttaagagagctta 2785657  T
Q  91 agagagaaaacttggagatcaaaggaggg-atcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaa--acattgtaatcaccttgg 187  Q
    ||||||||||||||||||||||||  ||| ||| | |||| |||||  |||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  2785656 agagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgg 2785557  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    | ||  ||||||||  |||||| ||||| ||| ||||||||||||  ||||||||||||||||| ||||    
T  2785556 gattatgggttcatagtgtgagggtgggaaaataccaaagggtag-gtctagggtttgttcatgagtaa 2785489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31396696 - 31396950
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||| ||||||| ||||||||| |||||| | |||| |||| ||| ||||||||||||||||||||||           ||| ||||    
T  31396696 cgtgacacgatctagggtaatcgtgacacgatttcttcagggcaggacttgtatttaaagtgttcttgtgcttttttgaagacaaccttgagagagctta 31396795  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttggg 188  Q
    ||||||||||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  ||||||||||||||||||||    
T  31396796 agagagaaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttggg 31396895  T
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggttt 244  Q
     ||  ||||||||  ||||||  |||| |||  ||||||||||| |||||||||||    
T  31396896 attatgggttcatagtgtgaggatgggaaaatgccaaagggtag-atctagggttt 31396950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 33768565 - 33768365
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag----------tagaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||| ||           ||| ||||    
T  33768565 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcatgactagtatttaaagtgttcttgtgcttttttggagataaccttaagagagctta 33768466  T
Q  91 agagagaaaacttggagatcaaag-gagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    ||||||||||||||||||||||||   |||||| | |||| |||||  |||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  33768465 agagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgg 33768366  T
Q  188 g 188  Q
    |    
T  33768365 g 33768365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 31401553 - 31401797
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||| ||||||| ||||||||| |||||| | |||| |||| ||| ||||||||||||||||||||||           ||| ||||    
T  31401553 cgtgacacgatctagggtaatcgtgacacgatttcttcagggcaggacttgtatttaaagtgttcttgtgcttttttgaagacaaccttgagagagctta 31401652  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttggg 188  Q
    ||||| ||||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  ||||||||||||||||||||    
T  31401653 agagacaaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttggg 31401752  T
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtaga 233  Q
     ||  ||||||||  ||||||  |||| |||  ||||||||||||    
T  31401753 attatgggttcatagtgtgaggatgggaaaatgccaaagggtaga 31401797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 31180643 - 31180447
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||| ||||| ||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||||||| ||||           ||| ||||    
T  31180643 cgtgacatgatcttgggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttt-gaagcggggcttggaagagctta 31180545  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
     |||||| |||||||| | ||||||||||| |  | |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  31180544 -gagagagaacttggataacaaaggagggaaccaaagggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 31180447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 24136276 - 24136080
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactt---------aa 91  Q
    |||||||||||||  ||||||||||||||||||  ||||| ||||  ||||||||||| |||||||||||| |||||| |||||| |||         ||    
T  24136276 cgtgacacgatct--ggaaatcgtggcacgattgtatcagaggaaagctagtatataaagtgttcttgtgcatttttggagtagagcttggaagagctaa 24136179  T
Q  92 gagaga-aaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| |||||||||   ||||||||||| |  | |||||| |||||||||  || ||||| ||||||||||||||||||||||||||||||||||||    
T  24136178 gagagagaaacttggattacaaaggagggaaccaaagggttgagtgtctttgtagaaagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 24136080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 30631586 - 30631520
Alignment:
Q  190 tttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30631586 tttagggttcatattgtgagagtggggaaacaccaaagggtagaatctatggtttgttcatgtgtaa 30631520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 30631730 - 30631640
Alignment:
Q  99 aacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  30631730 aacttggataacaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 30631640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1456844 - 1456920
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt 77  Q
    ||||||||| ||| ||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||    
T  1456844 cgtgacacggtcttgggaaatcgtggcacgatttctttagaggaagactagtatatattgtgttcttgtgctttttt 1456920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 31180394 - 31180337
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgt 246  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31180394 ttttatggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgt 31180337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 24136028 - 24135961
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  24136028 ttttagggttcacattgtgagagtggggaaacaccaaagggtagaatctaggacttgttcttgtgtaa 24135961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27445360 - 27445285
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt 77  Q
    ||||||||||| | ||||||||||||||||||| | |||| ||||| |||||||||| |||||||||||||||||||    
T  27445360 cgtgacacgattt-gggaaatcgtggcacgattgcttcagaggaaggctagtatatattgtgttcttgtgctttttt 27445285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27450203 - 27450128
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt 77  Q
    ||||||||||| | ||||||||||||||||||| | |||| ||||| |||||||||| |||||||||||||||||||    
T  27450203 cgtgacacgattt-gggaaatcgtggcacgattgcttcagaggaaggctagtatatattgtgttcttgtgctttttt 27450128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 38192353 - 38192286
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| |||||  |||||| |||||||    
T  38192353 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaa 38192286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 38219578 - 38219511
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| |||||  |||||| |||||||    
T  38219578 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaa 38219511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 35387955 - 35387893
Alignment:
Q  127 gggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| |||||||||  ||||| || ||||||||||| ||||||||||||||||||||||||    
T  35387955 gggttgagtgtctttgtagagagggtctcttgggttggaaaaaacattgtaatcaccttgggt 35387893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43592666 - 43592591
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt 77  Q
    ||||||||||| | ||||||||||| ||||||| | || | ||||| |||||||||| |||||||||||||||||||    
T  43592666 cgtgacacgattt-gggaaatcgtgacacgattgcttcggaggaaggctagtatatattgtgttcttgtgctttttt 43592591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43599111 - 43599036
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt 77  Q
    ||||||||||| | ||||||||||| ||||||| | |||| ||||| |||||||||| |||||||||||| ||||||    
T  43599111 cgtgacacgattt-gggaaatcgtgacacgattgcttcagaggaaggctagtatatattgtgttcttgtgttttttt 43599036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43604603 - 43604528
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt 77  Q
    ||||||||||| | ||||||||||| ||||||| | |||| ||||| |||||||||| |||||||||||| ||||||    
T  43604603 cgtgacacgattt-gggaaatcgtgacacgattgcttcagaggaaggctagtatatattgtgttcttgtgttttttt 43604528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43610095 - 43610020
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt 77  Q
    ||||||||||| | ||||||||||| ||||||| | |||| ||||| |||||||||| |||||||||||| ||||||    
T  43610095 cgtgacacgattt-gggaaatcgtgacacgattgcttcagaggaaggctagtatatattgtgttcttgtgttttttt 43610020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 35387842 - 35387791
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagg 240  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| |||||    
T  35387842 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactagg 35387791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10593050 - 10593118
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    ||||||||||| | ||||||||||| |||||||||| ||| ||||||||||||| ||| ||||||||||||    
T  10593050 cgtgacacgattt-gggaaatcgtgacacgatttcaacagaggaagactagtatgtaa-gtgttcttgtgc 10593118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 15464936 - 15464882
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    ||||||||||||||||||| |||||  |||||||||||| ||| ||||||||||||    
T  15464936 ggaaatcgtggcacgattttatcagtagaagactagtatttaa-gtgttcttgtgc 15464882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 38219664 - 38219629
Alignment:
Q  154 tcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||||||||||||||||||||||| ||||||||||    
T  38219664 tcttgggttgggaaaaacattgtaaacaccttgggt 38219629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 36932046 - 36932216
Alignment:
Q  18 aaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc-ttttttgaagtagaacttaagagaga-aaacttggagatcaaagg 115  Q
    ||||||||||||||||| |||||  ||||||| |||| ||| ||||||||||||  |||||| || ||| || |||||||| |||||||||   ||||||    
T  36932046 aaatcgtggcacgattttatcagctgaagactggtatttaa-gtgttcttgtgcagtttttggaggagagctgaagagagagaaacttggattgcaaagg 36932144  T
Q  116 agggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||| | |  |||||| ||||||||   | ||   | ||||||||||||  ||||||||||| ||||||||||    
T  36932145 agggaactttagggttgagtgtctttatagtgatgatctcttgggttggg--aaacattgtaaacaccttgggt 36932216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 29751537 - 29751458
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    ||||||||||| | || |||||||| ||||||| | | || ||||| ||||||||||| |||||||||||| | |||||||    
T  29751537 cgtgacacgattt-ggaaaatcgtgacacgattgctttagaggaaggctagtatataaagtgttcttgtgcatctttgaag 29751458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1054720 - 1054984
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||           ||| ||||    
T  1054720 cgtgacacgatctagggaaatcgtgacacgatttcttcaggggaggactagtatatattgtgttcttgtgcttttttgaagacaaccttaagagagctta 1054819  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||||| |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  1054820 agagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaaaacattgtaatcaccttgggat 1054919  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    || ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  1054920 tttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 1054984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 39445876 - 39445612
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||           ||| ||||    
T  39445876 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatatattgtgttcttgtgcttttttgaagacaaccttaagagagctta 39445777  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||||| |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  39445776 agagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaaaacattgtaatcaccttgggat 39445677  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    || ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  39445676 tttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 39445612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 25439605 - 25439868
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||| ||||           ||| ||||    
T  25439605 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactagtatttattgtgttcttgtgcttttt-gaagacaaccttaagagagctta 25439703  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||||| |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  25439704 agagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaaaacattgtaatcaccttgggat 25439803  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  25439804 ttagggttcatagtgtgagagtgggaaaataccaaagggtag-ctctagggtttgttcatgtgtaa 25439868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 25444798 - 25445061
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||| ||||           ||| ||||    
T  25444798 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactagtatttattgtgttcttgtgcttttt-gaagacaaccttaagagagctta 25444896  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||||| |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  25444897 agagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaaaacattgtaatcaccttgggat 25444996  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  25444997 ttagggttcatagtgtgagagtgggaaaataccaaagggtag-ctctagggtttgttcatgtgtaa 25445061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 44023583 - 44023846
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttt----------tgaagtagaactta 90  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||          | ||| ||| ||||    
T  44023583 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactggtatatattgtgttcttgtgctttttgaggataaccttaag-agagctta 44023681  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||||| |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  44023682 agagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaaaacattgtaatcaccttgggat 44023781  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    || ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  44023782 tttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 44023846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 256
Target Start/End: Complemental strand, 41398513 - 41398348
Alignment:
Q  92 gagagaaaacttggagatcaaaggagggatc-atatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    |||||| |||||||| | ||||||||||| | | |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  41398513 gagagagaacttggatagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 41398414  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  41398413 ttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaa 41398348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 92 - 256
Target Start/End: Complemental strand, 41390858 - 41390693
Alignment:
Q  92 gagagaaaacttggagatcaaaggagggatc-atatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    |||||| |||||||| | ||||||||||| | | |||| ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  41390858 gagagagaacttggatagcaaaggagggaaccaaatggattgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggtt 41390759  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  41390758 ttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaa 41390693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 24787032 - 24787226
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaact---------taa 91  Q
    |||||||||||||  |||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||| ||| ||         | |    
T  24787032 cgtgacacgatct--ggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttttgaaggagagcttggaagagctta 24787129  T
Q  92 gagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttggg 188  Q
    |||||| |||||||| | ||||||||||| |  | |||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||    
T  24787130 gagagagaacttggataacaaaggagggaaccaaagggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattataatcaccttggg 24787226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 41390980 - 41390896
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtaga 85  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41390980 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagtaga 41390896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 41398635 - 41398551
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtaga 85  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41398635 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagtaga 41398551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 244
Target Start/End: Original strand, 43988259 - 43988421
Alignment:
Q  83 agaacttaagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatc 180  Q
    ||||||||||||||||||||||||||||||||  |||||| | |||| |||||  |||||||||||||||||||| ||||||||||  ||||||||||||    
T  43988259 agaacttaagagagaaaacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaatc 43988358  T
Q  181 accttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggttt 244  Q
    |||||||| ||  ||||||||  ||||||  |||| |||  ||||||||||| |||||||||||    
T  43988359 accttgggattatgggttcatagtgtgaggatgggaaaatgccaaagggtag-atctagggttt 43988421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 24787280 - 24787347
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  24787280 ttttagggttcatattgtgagagttgggaaacaccaaagggtagaatctaggatttgttcttgtgtaa 24787347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 43988155 - 43988231
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt 77  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||| |||||||| |||||    
T  43988155 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgctcttgtgcattttt 43988231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 24202556 - 24202635
Alignment:
Q  110 caaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||||||||| | |  |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  24202556 caaaggagggaactttagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 24202635  T

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Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 24202686 - 24202753
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  24202686 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 24202753  T

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Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24793854 - 24793921
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtg 70  Q
    |||||||||||||  |||||||||||||||||| | |||| |||||||||||||||| ||||||||||||    
T  24793854 cgtgacacgatct--ggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtg 24793921  T

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Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 19358760 - 19358827
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||| |||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  19358760 ttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 19358827  T

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Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 19361349 - 19361416
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||| |||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  19361349 ttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 19361416  T

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Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 19366225 - 19366292
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||| |||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  19366225 ttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 19366292  T

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Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 19379989 - 19380056
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||| |||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  19379989 ttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 19380056  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 19365991 - 19366045
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    |||||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  19365991 ggaaatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 19366045  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 19358530 - 19358581
Alignment:
Q  19 aatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    ||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  19358530 aatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 19358581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 19361119 - 19361170
Alignment:
Q  19 aatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    ||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  19361119 aatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 19361170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 739 - 475
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||           ||| ||||    
T  739 cgtgacacgatctagggaaatcgtgacacgatttcttcaggggaggactggtatatattgtgttcttgtgcttttttgaagacaaccttaagagagctta 640  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggtt 190  Q
    ||||||||| ||||||||||||||  |||||| |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  639 agagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaaaacattgtaatcaccttgggat 540  T
Q  191 ttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    || ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  539 tttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 12397299 - 12397024
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc-ttttttgaagtagaacttaagagag--- 96  Q
    ||||||||||| | ||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||||       
T  12397299 cgtgacacgatttggggaaatcgtggcacgatttcttcagaggaatactagtatatattgtgttcttgtgccttttttgaagaagaacttaagagagctt 12397200  T
Q  97 ----------------aaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatc 180  Q
                    | |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  12397199 gtatgagcttagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatc 12397100  T
Q  181 accttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12397099 accttgggttttagggttcatattgtgatagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 12397024  T

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Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 24024025 - 24024299
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaag-------- 92  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||  || ||||            
T  24024025 cgtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatata--gtgttcttgtgcttttttgaagtaagacataagagagagct 24024122  T
Q  93 -------------agagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaat 179  Q
                 ||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  24024123 tgtatgagctttgagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggtttggaaaaacattgtaat 24024222  T
Q  180 caccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||| |||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  24024223 caccgtgggttttagggttcatcgtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaa 24024299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 21811950 - 21812210
Alignment:
Q  6 cacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaacttaagaga 95  Q
    |||||||| ||||||||||||||||||||  |||||| | |||||||||||| |||||||||||||||||||||||           |||||||||||||    
T  21811950 cacgatcttgggaaatcgtggcacgatttactcagggcaggactagtatatattgtgttcttgtgcttttttgaagctaaccttaagagaacttaagaga 21812049  T
Q  96 gaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggtt-gggaaaaacattgtaatcaccttgggttttag 194  Q
    |||| ||||||| ||||||  |||||| | |||| |||||  |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||  |    
T  21812050 gaaagcttggaggtcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttggggaaaaacattgtaatcaccttgggattatg 21812149  T
Q  195 ggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||  |||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  21812150 ggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 21812210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 125 - 256
Target Start/End: Complemental strand, 12406575 - 12406444
Alignment:
Q  125 atgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggttttagggttcatgttgtgagagtggggaaacacca 224  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  12406575 atgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttggcttttagggttcatattgtgagagtggggaaacacca 12406476  T
Q  225 aagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||||||||||||||    
T  12406475 aagggtagaatctagggtttgttcatgtgtaa 12406444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 87 - 253
Target Start/End: Original strand, 31109385 - 31109553
Alignment:
Q  87 cttaagagagaaaa-cttggagatcaaaggagggatc-atatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcacct 184  Q
    |||||||||||||| |||||| | ||||||||||| | |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  31109385 cttaagagagaaaaacttggatagcaaaggagggaaccatatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcacct 31109484  T
Q  185 tgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtg 253  Q
    |||||||||||||||||  |||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  31109485 tgggttttagggttcatagtgtgagagtgggaaaatatcaaagggtagaatctagggtttgttcatgtg 31109553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 4873515 - 4873310
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaag-------- 92  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||            
T  4873515 cgtgacacgatctagggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaagaagaacttaagagagcttg 4873416  T
Q  93 -----------agagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatca 181  Q
               ||||| |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  4873415 gaagagcttagagagagaacttggataacaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatca 4873316  T
Q  182 ccttgg 187  Q
    ||||||    
T  4873315 ccttgg 4873310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 87 - 256
Target Start/End: Complemental strand, 19992595 - 19992426
Alignment:
Q  87 cttaagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttggg-aaaaacattgtaatcacctt 185  Q
    ||||||||||||||||||||| ||||||  |||||| |||||| |||||  |||||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  19992595 cttaagagagaaaacttggaggtcaaagaggggatcctatggggtgtgttcctttgatgtgagtgtttcttaggttggggaaaaacattgtaatcacctt 19992496  T
Q  186 gggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||| ||| ||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  19992495 gggattttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaa 19992426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24261027 - 24261271
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag-----------tagaactt 89  Q
    |||||||||||||||||||||||||||||||||||||||||  | ||||||||| ||| |||||||||||||  |||||||            |||||||    
T  24261027 cgtgacacgatctagggaaatcgtggcacgatttcatcaggacaggactagtatttaaagtgttcttgtgctcatttgaaggttaaccttgagagaactt 24261126  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    ||||||| |||||||||||||||||  |||||| | |||| |||||  ||||||||||||||  |||| ||||||||||  ||||||||||||| |||||    
T  24261127 aagagaggaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaatcatcttgg 24261226  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtag 232  Q
    | ||  ||||||||  ||||||  |||| ||  ||||||||||||    
T  24261227 gattatgggttcatagtgtgaggttgggaaattaccaaagggtag 24261271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 31109277 - 31109373
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaagagaga 97  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||   |||||||||||||    
T  31109277 cgtgacacgatctagggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaagataaacttaagagaga 31109373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 20357231 - 20357410
Alignment:
Q  18 aaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------agagagaaaacttggaga 108  Q
    |||||||||||||||| | |||| |||||||||||||||| |||||||||||||||||| |||| ||| |||          || |||| |||||||| |    
T  20357231 aaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttt-gaaggagagcttggtagagcttagtgagagaacttggata 20357329  T
Q  109 tcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
     ||||||||||| |  | |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  20357330 acaaaggagggaaccaaagggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 20357410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 16880454 - 16880241
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag-----------tagaactt 89  Q
    ||||||||||||||||||||||||||||||||||| || ||| | ||||||||| ||| |||||||||||||  |||||||            |||||||    
T  16880454 cgtgacacgatctagggaaatcgtggcacgatttcttctgggcaggactagtatttaaagtgttcttgtgctcatttgaaggttaaccttgagagaactt 16880355  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    ||||||| |||||||||||||||||  |||||| | |||| |||||  ||||||||||||||  |||| |||||| |||  ||||||||||||| |||||    
T  16880354 aagagaggaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttggaaaaacaacattgtaatcatcttgg 16880255  T
Q  188 gttttagggttcat 201  Q
    | ||  ||||||||    
T  16880254 gattatgggttcat 16880241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 16885309 - 16885097
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag-----------tagaactt 89  Q
    ||||||||||||||||||||||||||||||||||| || ||| | ||||||||| ||| |||||||||||||  |||||||            |||||||    
T  16885309 cgtgacacgatctagggaaatcgtggcacgatttcttctgggcaggactagtatttaaagtgttcttgtgctcatttgaaggttaaccttgagagaactt 16885210  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    ||||||| |||||||||||||||||  |||||| | |||| |||||  ||||||||||||||  |||| ||||||||||  ||||||||||||| |||||    
T  16885209 aagagaggaaacttggagatcaaagatgggatcctttggg-tgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaatcatcttgg 16885111  T
Q  188 gttttagggttcat 201  Q
    | ||  ||||||||    
T  16885110 gattatgggttcat 16885097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 2058398 - 2058202
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaa-----------gtagaactt 89  Q
    |||||||||||||  |||||||||||||||||| | |||| ||||| |||||||||| |||||||||||||   ||||||           | ||| |||    
T  2058398 cgtgacacgatct--ggaaatcgtggcacgattgcttcagaggaaggctagtatatattgtgttcttgtgcagatttgaaaagagagcttggaagagctt 2058301  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    | |||||| ||||||||   ||||||||||| |  | |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  2058300 a-gagagagaacttggattacaaaggagggaaccaaagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 2058202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 24266006 - 24266150
Alignment:
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    |||||||| ||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  24266006 aagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgg 24266105  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtag 232  Q
    | ||  ||||||||  ||||||  |||| ||  ||||||||||||    
T  24266106 gattatgggttcatagtgtgaggttgggaaattaccaaagggtag 24266150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 24265883 - 24265963
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||||||| ||| ||||||||||||| ||||||||    
T  24265883 cgtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaag 24265963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 1533228 - 1533307
Alignment:
Q  110 caaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||||||||| |  | |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  1533228 caaaggagggaaccaaagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 1533307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 1533359 - 1533410
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagg 240  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  1533359 ttttagggttcatattgtgagagtgggaaaacaccaaagggtagaatctagg 1533410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 21639988 - 21639921
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  21639988 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 21639921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 21646186 - 21646119
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  21646186 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 21646119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 2058147 - 2058079
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacacca-aagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||||||||||||||||||| || | ||||||||||||||| |||||| |||||||    
T  2058147 ttttagggttcatattgtgagagtggggaaacaacatatgggtagaatctagggcttgttcttgtgtaa 2058079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12406651 - 12406595
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatata 57  Q
    ||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||    
T  12406651 cgtgacacgatttggggaaatcgtggcacgatttcttcagaggaagactagtatata 12406595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 18408943 - 18408876
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| |||||  |||||| |||||||    
T  18408943 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaa 18408876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 18413819 - 18413752
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| |||||  |||||| |||||||    
T  18413819 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaa 18413752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 20357463 - 20357530
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||||||||||||||||||||  | |||||||||||||||  ||||| |||||||    
T  20357463 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcatgttcttgtgtaa 20357530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 21640220 - 21640039
Alignment:
Q  18 aaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------agagaga-aaacttggag 107  Q
    |||||||| ||||||| | ||||  | ||||||||||||| |||||||||||||| |||||||| ||| |||          ||||||| |||||||||     
T  21640220 aaatcgtgacacgattgcttcagaaggagactagtatatattgtgttcttgtgctattttgaaggagagcttggaagagcttagagagagaaacttggat 21640121  T
Q  108 atcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
      ||||||||||| |    |||||| |||||||||  |||||  | ||||||||||||||||||||||||| ||||||||||    
T  21640120 tacaaaggagggaactctagggttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaaacaccttgggt 21640039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 21646299 - 21646237
Alignment:
Q  127 gggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| |||||||||  |||||  | ||||||||||||||||||||||||| ||||||||||    
T  21646299 gggttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaaacaccttgggt 21646237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1533111 - 1533177
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgt 69  Q
    |||||||||||||  |||||||||||||||||| | |||| ||||| ||||||||||  ||||||||||    
T  1533111 cgtgacacgatct--ggaaatcgtggcacgattgcttcagaggaaggctagtatatatagtgttcttgt 1533177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 2479738 - 2479565
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc-ttttttgaagtagaactt-aagagaga-aaacttggagatcaa 112  Q
    ||||| ||||||||||||| |||||  |||||||||||||||| ||||||||||||   ||||| || ||| ||| |||||||| |||||||||   |||    
T  2479738 ggaaaacgtggcacgattttatcagttgaagactagtatataa-gtgttcttgtgcagattttggagaagagcttgaagagagagaaacttggattacaa 2479640  T
Q  113 aggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||||| | |  |||||| ||||||||   | |||  | ||||||||||||  ||||||||||| ||||||||||    
T  2479639 aggagggaactttagggttgagtgtctttatagtgaggatctcttgggttggg--aaacattgtaaacaccttgggt 2479565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 24789647 - 24789712
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    |||||||||| ||||||| | |||| ||||| ||||||||||| |||||||||||| | |||||||    
T  24789647 ggaaatcgtgacacgattgcttcagaggaaggctagtatataaagtgttcttgtgcatctttgaag 24789712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 18409028 - 18408993
Alignment:
Q  154 tcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||||||||||||||||||||||| ||||||||||    
T  18409028 tcttgggttgggaaaaacattgtaaacaccttgggt 18408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 48408605 - 48408656
Alignment:
Q  19 aatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    ||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  48408605 aatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 48408656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 34760 - 35034
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaacttaagagag---- 96  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||| ||||||||| ||||||||||||||  | ||||||||||        
T  34760 cgtgacacgatctagggaaatcgtggcactatttcttcagaggaagactagtatatattgtgttcttttgcttttttgaagtgaatcttaagagagcttg 34859  T
Q  97 ---------------aaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatca 181  Q
                   | |||||||| | ||||||||||| |  |||||||| ||||||||| ||||||||| ||||||||| || |||||||||||||||    
T  34860 tatgagcttagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaacattgtaatca 34959  T
Q  182 ccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34960 ccttgggttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaa 35034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 18656822 - 18656547
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt------------------ 82  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||||||                       
T  18656822 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaacctt 18656723  T
Q  83 ---agaacttaagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaat 179  Q
       ||||||||||||||||||||||||||||||||  |||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  18656722 gagagaacttaagagagaaaacttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagtgtttcttaggttgggaaaaacattgtaat 18656623  T
Q  180 caccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||| || |||||| ||  |||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  18656622 caccttgggattaagggtttatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 18656547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 22173010 - 22173167
Alignment:
Q  99 aacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggttttagggtt 198  Q
    |||||||| | ||||| ||||| |  |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22173010 aacttggatagcaaagtagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttgggttttagggtt 22173109  T
Q  199 catgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22173110 catattaggagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 22173167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 2676781 - 2677058
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt------------------ 82  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||||||                       
T  2676781 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagagaaccttaagacaacctt 2676880  T
Q  83 ---agaacttaagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgta 177  Q
       ||||||||||||||||||||||||| ||||||  |||||| | |||| |||||  |||||||||||||||||||| ||||||||||  |||||||||    
T  2676881 gagagaacttaagagagaaaacttggaggtcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgta 2676980  T
Q  178 atcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| ||||||||||||  ||||||  |||| ||| |||||||||||| |||||||||||  ||||||||||    
T  2676981 atcaccttgggatttagggttcatagtgtgaggatgggaaaataccaaagggtag-atctagggttttgtcatgtgtaa 2677058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 2672625 - 2672902
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt------------------ 82  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| ||||||||||||||||||||||                       
T  2672625 cgtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagagaaccttaagacaacctt 2672724  T
Q  83 ---agaacttaagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgta 177  Q
       ||||||||||||||||||||||||| ||||||  |||||| | |||| |||||  |||||||||||||||||||| ||||||||||  |||||||||    
T  2672725 gagagaacttaagagagaaaacttggaggtcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgta 2672824  T
Q  178 atcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||| |||| |||||||  ||||||  |||| ||| |||||||||||| |||||||||||  ||||||||||    
T  2672825 atcaccttgggatttaaggttcatagtgtgaggatgggaaaataccaaagggtag-atctagggttttgtcatgtgtaa 2672902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 28503525 - 28503727
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactt----------- 89  Q
    ||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||| ||| |||               
T  28503525 cgtgacacgatcttgggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttttgaaggagagcttggaagagctta 28503624  T
Q  90 --aagagagaaaacttggagatcaaaggaggg-atcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttg 186  Q
       ||||||| |||||||| | |||||||||| | || | |||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  28503625 gagagagagagaacttggataacaaaggagggaaccaaaagggttgagtgtctttgttgagagtgtctcttgggttgggaaaaatattgtaatcaccttg 28503724  T
Q  187 ggt 189  Q
    |||    
T  28503725 ggt 28503727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 24968388 - 24968221
Alignment:
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    |||||||| ||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  24968388 aagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgg 24968289  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    | ||||||||||||  ||||||  |||| ||  |||||||||||| |||| ||||||||||||||||||    
T  24968288 gatttagggttcatagtgtgaggatgggaaagtaccaaagggtag-atctcgggtttgttcatgtgtaa 24968221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 28501360 - 28501560
Alignment:
Q  3 tgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactt------------- 89  Q
    ||||||||||| ||||||||||||||||||| | |||| |||||||||||||||| ||||| ||||||||||||||||| ||| |||                 
T  28501360 tgacacgatcttgggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgtacttgtgcttttttgaaggagagcttggaagagcttaga 28501459  T
Q  90 aagagagaaaacttggagatcaaaggaggg-atcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttggg 188  Q
     ||||||| |||||||| | |||||||||| | || | ||| || ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  28501460 gagagagagaacttggataacaaaggagggaaccaaaagggatgagtgtctttgttgagagtgtctcttgggttgggaaaaacattgtaatcaccttggg 28501559  T
Q  189 t 189  Q
    |    
T  28501560 t 28501560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32475865 - 32475652
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt-----------agaactt 89  Q
    ||||||||||||||||||||||||||||||||||| || ||| | ||||||||| ||| |||||||||||||  |||||||            |||||||    
T  32475865 cgtgacacgatctagggaaatcgtggcacgatttcttctgggcaggactagtatttaaagtgttcttgtgctcatttgaaggttaaccttgagagaactt 32475766  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    ||||||| |||||||||||||||||  |||||| | |||| |||||  ||||||||||||||  |||| ||||||||||  ||||||||||||| |||||    
T  32475765 aagagaggaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaatcatcttgg 32475666  T
Q  188 gttttagggttcat 201  Q
    | ||  ||||||||    
T  32475665 gattatgggttcat 32475652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 8738743 - 8738926
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------agagaga-aaacttgg 105  Q
    |||||||||||||||||| | |||| ||||| |||||||||| ||||||||||||||||||||||| ||| |||          ||||||| ||||||||    
T  8738743 ggaaatcgtggcacgattgcttcagaggaagtctagtatatattgtgttcttgtgcttttttgaaggagagcttggaagagcttagagagagaaacttgg 8738842  T
Q  106 agatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |   ||||||||||| |  |||||||| |||||||||  |||||| | ||||||||||||||||||||||||||||||||||||    
T  8738843 attgcaaaggagggaaccaatgggttgagtgtctttgtagagagtatctcttgggttgggaaaaacattgtaatcaccttgggt 8738926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32480723 - 32480510
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt-----------agaactt 89  Q
    ||||||||||||||||||||||||||||||||||| ||  || | ||||||||| ||| |||||||||||||  |||||||            |||||||    
T  32480723 cgtgacacgatctagggaaatcgtggcacgatttcttctaggcaggactagtatttaaagtgttcttgtgctcatttgaaggttaaccttgagagaactt 32480624  T
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    ||||||| |||||||||||||||||  |||||| | |||| |||||  ||||||||||||||  |||| ||||||||||  ||||||||||||| |||||    
T  32480623 aagagaggaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaatcatcttgg 32480524  T
Q  188 gttttagggttcat 201  Q
    | ||  ||||||||    
T  32480523 gattatgggttcat 32480510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 9090981 - 9091164
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaact---------taagagaga-aaacttgg 105  Q
    |||||||||||||||||| | |||| ||||| |||||||||| ||||||||||||||||||||||| ||| ||         | ||||||| ||||||||    
T  9090981 ggaaatcgtggcacgattgcttcagaggaagtctagtatatattgtgttcttgtgcttttttgaaggagagcttggaagagcttagagagagaaacttgg 9091080  T
Q  106 agatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |   ||||||||||| |  | |||||| |||||||||  |||||| | ||||||||||||||||||||||||||||||||||||    
T  9091081 attacaaaggagggaaccaaagggttgagtgtctttgtagagagtatctcttgggttgggaaaaacattgtaatcaccttgggt 9091164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 22172901 - 22172973
Alignment:
Q  15 gggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaac 87  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||    
T  22172901 gggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaagaagaac 22172973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 7167425 - 7167358
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  7167425 ttttagggttcatattgtgagagtggggaaataccaaagggtagaatctagggtttgttcttgtgtaa 7167358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24968498 - 24968419
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaa 80  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||| ||||||    
T  24968498 cgtgccacgatctagggaaatcgtggcacgatttcttcagggcaagactagtatttaaagtgttcttgtgcttatttgaa 24968419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 28501613 - 28501680
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  28501613 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttattcttgtgtaa 28501680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 28503780 - 28503847
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  28503780 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttattcttgtgtaa 28503847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 8512498 - 8512354
Alignment:
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    |||||||| ||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  8512498 aagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgg 8512399  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtag 232  Q
    | ||  ||||||||  ||||||  |||| ||  ||||||||||||    
T  8512398 gattatgggttcatagtgtgaggttgggaaattaccaaagggtag 8512354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 8517378 - 8517234
Alignment:
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    |||||||| ||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  8517378 aagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgg 8517279  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtag 232  Q
    | ||  ||||||||  ||||||  |||| ||  ||||||||||||    
T  8517278 gattatgggttcatagtgtgaggttgggaaattaccaaagggtag 8517234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8512621 - 8512541
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||||||| ||| ||||||||||||| ||||||||    
T  8512621 cgtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaag 8512541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8517501 - 8517421
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||||||| ||| ||||||||||||| ||||||||    
T  8517501 cgtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaag 8517421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 40372476 - 40372659
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------agagaga-aaacttgg 105  Q
    |||||||||| ||||||||| |||| |||||||||||||||| |||||||||||||   |||| |  ||| |||          ||||||| ||||||||    
T  40372476 ggaaatcgtgacacgatttcttcagaggaagactagtatatattgtgttcttgtgcagatttgtaagagagcttggaagagcttagagagagaaacttgg 40372575  T
Q  106 agatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |   ||||||||||| |  | |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  40372576 attacaaaggagggaaccaaagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 40372659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2671268 - 2671449
Alignment:
Q  18 aaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgct--tttttgaa--------gtagaacttaagagaga-aaacttgga 106  Q
    |||||||| ||||||||| |||| |||||||||||||||| |||||||||||||   ||| ||||        | ||| |||| |||||| |||||||||    
T  2671268 aaatcgtgacacgatttcttcagaggaagactagtatatattgtgttcttgtgcagatttgtgaaagagcttggaagagctta-gagagagaaacttgga 2671366  T
Q  107 gatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
       ||||||||||| |  | |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  2671367 ttacaaaggagggaaccaaagggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 2671449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 7167660 - 7167478
Alignment:
Q  18 aaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagtagaactta---------agagaga-aaacttggag 107  Q
    ||||| |||||||||||| |||| |||||||||||||||| |||||||||||||   ||||   |||| |||          ||||||| |||||||||     
T  7167660 aaatcatggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcagatttgggatagagcttggaagagcttagagagagaaacttggat 7167561  T
Q  108 atcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttggga-aaaacattgtaatcaccttgggt 189  Q
    | ||||||||||| |  | |||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  7167560 aacaaaggagggaaccaaagggttgagtgtctttgttgagagtgtctcttgggttgggaaaaaacattgtaatcaccttgggt 7167478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 8477660 - 8477598
Alignment:
Q  127 gggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  8477660 gggttgagtgtctttgtagagagtgtctcttgggttgggaaaaacattgtaatcaccttgggt 8477598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 26928507 - 26928574
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  26928507 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 26928574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 8477545 - 8477493
Alignment:
Q  189 ttttagggttcatgttgtgagagtgggg-aaacaccaaagggtagaatctagg 240  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  8477545 ttttagggttcatattgtgagagtgggggaaacaccaaagggtagaatctagg 8477493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 2671502 - 2671569
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||||||||||||||||||||  | ||||||||||||||| ||| || |||||||    
T  2671502 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttggtcttgtgtaa 2671569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 32143501 - 32143434
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||| |||||||||||||||| || ||||||||||||||  |||||| |||||||    
T  32143501 ttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaa 32143434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 40372712 - 40372779
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| || |||||||||||||||||  | ||||||||||||||| |||||| |||||||    
T  40372712 ttttagggttcatattatgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgtaa 40372779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 8738982 - 8739046
Alignment:
Q  192 tagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||| ||||||||||||||||| ||  | ||||||||||||||| |||||| |||||||    
T  8738982 tagggttcatattgtgagagtggggaaatacatatgggtagaatctagggattgttcttgtgtaa 8739046  T

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Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 9091220 - 9091284
Alignment:
Q  192 tagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    |||||||||| ||||||||||||||||| ||  | ||||||||||||||| |||||| |||||||    
T  9091220 tagggttcatattgtgagagtggggaaatacatatgggtagaatctagggattgttcttgtgtaa 9091284  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 1306128 - 1306061
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||| |||||||||||||||| || |||||||| ||| |  |||||| |||||||    
T  1306128 ttttagggttcatattgagagagtggggaaacacaaatgggtagaaactatgacttgttcttgtgtaa 1306061  T

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Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 1306214 - 1306179
Alignment:
Q  154 tcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1306214 tcttgggttgggaaaaacattgtaaacaccttgggt 1306179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 1306362 - 1306308
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    |||||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  1306362 ggaaatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 1306308  T

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Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 23198307 - 23198253
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    |||||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  23198307 ggaaatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 23198253  T

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Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 27352301 - 27352356
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    |||||||||||||||||| | |||| ||||| ||| |||||| |||||||||||||    
T  27352301 ggaaatcgtggcacgattgcttcagaggaaggctaatatatattgtgttcttgtgc 27352356  T

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Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 27453138 - 27453071
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| ||| |||||||||||||||| || ||||||||  ||||  |||||| |||||||    
T  27453138 ttttagggttcatattgagagagtggggaaacacaaatgggtagaaaataggaattgttcttgtgtaa 27453071  T

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Target: scaffold0355 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 3543 - 3820
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgctttttt--gaagtagaacttaagagagaa 98  Q
    |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||||  | || |||||||||||||||     
T  3543 cgtgacacgatctaggaaaatcgtgacacgatttcttcaggggaagactagtatatattgtattcttgtgcttttttttgtagaagaacttaagagagat 3642  T
Q  99 --------------------aacttggagatcaaaggagggatc-atatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgta 177  Q
                        |||||||| | ||||||||||| | | |||||||| ||||||||| ||||||||| |||| |||| ||||||||||||||    
T  3643 tgtatgagctttgtagagagaacttggatagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttaggttaggaaaaacattgta 3742  T
Q  178 atcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  3743 atcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaa 3820  T

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Target: scaffold0355; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 9514 - 9615
Alignment:
Q  154 tcttgggttgggaaaaacattgtaatcaccttgggttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtg 253  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  9514 tcttaggttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtg 9612  T
Q  254 taa 256  Q
    |||    
T  9613 taa 9615  T

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Target: scaffold0197 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 18870 - 19124
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaagt----------agaactta 90  Q
    |||||||||||||| |||||||||||||||||||| |||||| | ||||| ||| ||| ||||||||||||||||||||||           ||||||||    
T  18870 cgtgacacgatctaaggaaatcgtggcacgatttcttcagggcaggactaatatttaaagtgttcttgtgcttttttgaagacaaccttgagagaactta 18969  T
Q  91 agagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttggg 188  Q
    ||||||||||||||||||||||||  |||||| | |||| |||||  |||||||||||||||||||| ||||||||||  |||||||||||||||||||     
T  18970 agagagaaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgga 19069  T
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggttt 244  Q
     ||  ||||||||  ||||||  |||| ||  |||||||||||| |||||||||||    
T  19070 attatgggttcatagtgtgaggttgggaaattaccaaagggtag-atctagggttt 19124  T

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Target: scaffold0197; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 14113 - 14257
Alignment:
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    |||||||| ||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  14113 aagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgg 14212  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtag 232  Q
    | ||  ||||||||  ||||||  |||| ||  ||||||||||||    
T  14213 gattatgggttcatagtgtgaggttgggaaattaccaaagggtag 14257  T

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Target: scaffold0197; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13990 - 14070
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||||||| ||| ||||||||||||| ||||||||    
T  13990 cgtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaag 14070  T

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Target: scaffold0259 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1945 - 2025
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    ||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||| |||||||||||||| |||||||    
T  1945 cgtgacacgatctagggaaatcgtgacacgatttcttcagggcaggactagtatataaagtgttcttgtgcttatttgaag 2025  T

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Target: scaffold0259; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 2055 - 2200
Alignment:
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    ||||| || ||||||||| |||| |  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  2055 aagagtgataacttggaggtcaaggaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgg 2154  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtaga 233  Q
    | ||  ||||||||  ||||||  |||| ||  |||||||||||||    
T  2155 gattatgggttcatagtgtgaggttgggaaattaccaaagggtaga 2200  T

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Target: scaffold0028 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 148650 - 148730
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    ||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||| |||||||||||||| |||||||    
T  148650 cgtgacacgatctagggaaatcgtgacacgatttcttcagggcaggactagtatataaagtgttcttgtgcttatttgaag 148730  T

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Target: scaffold0028; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 148760 - 148905
Alignment:
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    ||||| || ||||||||| |||| |  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  148760 aagagtgataacttggaggtcaaggaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgg 148859  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtaga 233  Q
    | ||  ||||||||  ||||||  |||| ||  |||||||||||||    
T  148860 gattatgggttcatagtgtgaggttgggaaattaccaaagggtaga 148905  T

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Target: scaffold0009 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 176781 - 176925
Alignment:
Q  90 aagagagaaaacttggagatcaaaggagggatcatatgggttgtgtgtctttgatgagagtgtttcttgggttgggaaa--aacattgtaatcaccttgg 187  Q
    |||||||| ||||||||||||||||  |||||| | |||| |||||  ||||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  176781 aagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgg 176880  T
Q  188 gttttagggttcatgttgtgagagtggggaaacaccaaagggtag 232  Q
    | ||  ||||||||  ||||||  |||| ||  ||||||||||||    
T  176881 gattatgggttcatagtgtgaggttgggaaattaccaaagggtag 176925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 176656 - 176736
Alignment:
Q  1 cgtgacacgatctagggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgcttttttgaag 81  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||||||| ||| ||||||||||||| ||||||||    
T  176656 cgtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaag 176736  T

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Target: scaffold0188 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 17756 - 17818
Alignment:
Q  127 gggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| |||||||||  |||||  | ||||||||||||||||||||||||||||||||||||    
T  17756 gggttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaatcaccttgggt 17818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 23849 - 23911
Alignment:
Q  127 gggttgtgtgtctttgatgagagtgtttcttgggttgggaaaaacattgtaatcaccttgggt 189  Q
    |||||| |||||||||  |||||  | ||||||||||||||||||||||||||||||||||||    
T  23849 gggttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaatcaccttgggt 23911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 17869 - 17936
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| ||| |  |||||| |||||||    
T  17869 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactatgacttgttcttgtgtaa 17936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 23962 - 24029
Alignment:
Q  189 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaa 256  Q
    ||||||||||||| |||||||||||||||||||| || |||||||| ||| |  |||||| |||||||    
T  23962 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactatgacttgttcttgtgtaa 24029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 705 - 759
Alignment:
Q  16 ggaaatcgtggcacgatttcatcaggggaagactagtatataatgtgttcttgtgc 71  Q
    |||||||||| |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  705 ggaaatcgtgacacgattttatcagtggaagactagtatttaa-gtgttcttgtgc 759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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