View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_high_3 (Length: 457)
Name: NF5953_high_3
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 438
Target Start/End: Complemental strand, 40466819 - 40466406
Alignment:
| Q |
21 |
ctcacgacattcatttcactaatcacccacatttagattctatgaagttttaaagtgtagtttgtgaaaaaattaaagtggtacgccgtgattttattat |
120 |
Q |
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| T |
40466819 |
ctcacgacattcatttcactaatcacccacatttaaattctatgaagttttaaagtgtagtttttgaaaaaattagaatggtacaccgtgattttattat |
40466720 |
T |
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| Q |
121 |
agtcatcatgaattcaaacatgcatgaacttacacaagttgaagtgacacattcaattgacttggaaaataaaattaaagggctatctattgggtgtcac |
220 |
Q |
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| T |
40466719 |
aatcatcgtgaattcaaacatgcatgaacttacacaagttgaagtgacacattcaattgactt-gaaattaaaattaaagggctatctattgggtgtcac |
40466621 |
T |
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| Q |
221 |
aact-atcacaagtctttgaaacaattggagtacctattttactnnnnnnnnnnnnnnnnnnnnnnnnncacaatgatattgacataggaccacgaattg |
319 |
Q |
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| T |
40466620 |
aactcatcacaagtctttgaaacaattggagtacctattttactaaaaggaaaaaaaataaaataaaaacacaatgatattgacataggaccacgaattg |
40466521 |
T |
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| Q |
320 |
tgtttggtttttagannnnnnnggttaaagaggggaccatagtaattaaagtagaaacacataaacaaacacagataagacattggatcaagttttcctt |
419 |
Q |
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| T |
40466520 |
tgtttggtttttagatttttttggttaaagaggggaccatagtaattaaagtagaaacac----acaaacacagataagacattggatcaagttttcctt |
40466425 |
T |
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| Q |
420 |
ggttccctatagacgagtc |
438 |
Q |
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| T |
40466424 |
ggttccctatagacgagtc |
40466406 |
T |
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