View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5953_high_33 (Length: 215)

Name: NF5953_high_33
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5953_high_33
NF5953_high_33
[»] chr1 (3 HSPs)
chr1 (69-201)||(14613028-14613160)
chr1 (116-154)||(47989562-47989600)
chr1 (118-168)||(49217129-49217179)
[»] chr4 (2 HSPs)
chr4 (120-179)||(37496773-37496832)
chr4 (116-169)||(44362720-44362773)
[»] chr7 (2 HSPs)
chr7 (116-169)||(25956499-25956551)
chr7 (116-167)||(22801684-22801735)
[»] chr6 (1 HSPs)
chr6 (116-169)||(26178537-26178590)
[»] chr5 (1 HSPs)
chr5 (69-169)||(30080442-30080542)
[»] chr3 (1 HSPs)
chr3 (116-179)||(34834870-34834933)
[»] scaffold0136 (1 HSPs)
scaffold0136 (71-154)||(3805-3888)
[»] scaffold0314 (1 HSPs)
scaffold0314 (133-169)||(9017-9053)
[»] chr8 (2 HSPs)
chr8 (69-109)||(22600547-22600587)
chr8 (116-160)||(42874576-42874620)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 14613160 - 14613028
Alignment:
Q  69 agaaaataacatgattcaatataatcacaagtgacagtatcatgcttgtgtcggacacgacacatgtcggacatggggacacgccttcaatcagaagtgt 168  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | || |||||||||||||||||||||||    
T  14613160 agaaaatgacatgatttaatataatcacaagtgacagtgtcatgcttgtgtcggacacgacatatgtcggatacggagacacgccttcaatcagaagtgt 14613061  T
Q  169 cgctgcaacagttttcctctaaccaagaattat 201  Q
    |||||||||||||||||||||||||||||||||    
T  14613060 cgctgcaacagttttcctctaaccaagaattat 14613028  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 47989562 - 47989600
Alignment:
Q  116 gtgtcggacacgacacatgtcggacatggggacacgcct 154  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  47989562 gtgtcggacacgacacatgtctgacatcgggacacgcct 47989600  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 49217129 - 49217179
Alignment:
Q  118 gtcggacacgacacatgtcggacatggggacacgccttcaatcagaagtgt 168  Q
    ||||||||||||||||||||||||| |||||||  ||| ||| ||||||||    
T  49217129 gtcggacacgacacatgtcggacatcgggacacatctttaattagaagtgt 49217179  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 37496773 - 37496832
Alignment:
Q  120 cggacacgacacatgtcggacatggggacacgccttcaatcagaagtgtcgctgcaacag 179  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||  ||||||||    
T  37496773 cggacacgacacatgtcggacaccgggacacgccttcaatcataagtgtccgtgcaacag 37496832  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 44362720 - 44362773
Alignment:
Q  116 gtgtcggacacgacacatgtcggacatggggacacgccttcaatcagaagtgtc 169  Q
    ||||| |||||||||| | |||||||| ||||||| |||| |||||||||||||    
T  44362720 gtgtcagacacgacacgtatcggacatcgggacacaccttaaatcagaagtgtc 44362773  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 25956499 - 25956551
Alignment:
Q  116 gtgtcggacacgacacatgtcggacatggggacacgccttcaatcagaagtgtc 169  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  25956499 gtgtcggacacgatacatgtcggacacggg-acacgccttcaatcagaagtgtc 25956551  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 22801735 - 22801684
Alignment:
Q  116 gtgtcggacacgacacatgtcggacatggggacacgccttcaatcagaagtg 167  Q
    ||||| ||||| |||| |||||||||  ||||||||||||||||||||||||    
T  22801735 gtgtctgacaccacacttgtcggacactgggacacgccttcaatcagaagtg 22801684  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 26178537 - 26178590
Alignment:
Q  116 gtgtcggacacgacacatgtcggacatggggacacgccttcaatcagaagtgtc 169  Q
    |||||||||||||||| |||||||||| ||||||  ||||||||||||||||||    
T  26178537 gtgtcggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtc 26178590  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 30080542 - 30080442
Alignment:
Q  69 agaaaataacatgattcaatataatcacaagtgacagtatcatgcttgtgtcggacacgacacatgtcggacatggggacacgccttcaatcagaagtgt 168  Q
    ||||||| |||| ||||||| |||||||||||  | || |  || | |||||||||| |||||||||||||||  ||||||| |||||||| ||||||||    
T  30080542 agaaaatgacataattcaatgtaatcacaagtatcggtgtggtgttagtgtcggacatgacacatgtcggacaccgggacactccttcaattagaagtgt 30080443  T
Q  169 c 169  Q
    |    
T  30080442 c 30080442  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 34834933 - 34834870
Alignment:
Q  116 gtgtcggacacgacacatgtcggacatggggacacgccttcaatcagaagtgtcgctgcaacag 179  Q
    |||||||||  || ||||||||||||  ||||||||||||||||||||||||||  ||||||||    
T  34834933 gtgtcggacttgatacatgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacag 34834870  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 3888 - 3805
Alignment:
Q  71 aaaataacatgattcaatataatcacaagtgacagtatcatgcttgtgtcggacacgacacatgtcggacatggggacacgcct 154  Q
    ||||| |||| ||||| | |||| ||||||| |||| || || | ||||||||||||||||||||| ||||| | |||||||||    
T  3888 aaaatcacataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgacacatgtccgacatcgagacacgcct 3805  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 9017 - 9053
Alignment:
Q  133 tgtcggacatggggacacgccttcaatcagaagtgtc 169  Q
    |||||||||  ||||||||||||||||||||||||||    
T  9017 tgtcggacaccgggacacgccttcaatcagaagtgtc 9053  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 22600547 - 22600587
Alignment:
Q  69 agaaaataacatgattcaatataatcacaagtgacagtatc 109  Q
    ||||||| |||| |||||||||||||||||||| |||||||    
T  22600547 agaaaatgacataattcaatataatcacaagtgccagtatc 22600587  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 42874576 - 42874620
Alignment:
Q  116 gtgtcggacacgacacatgtcggacatggggacacgccttcaatc 160  Q
    |||| |||||| ||||||||||||||| | |||||||||||||||    
T  42874576 gtgttggacacaacacatgtcggacatcgagacacgccttcaatc 42874620  T

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