View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_high_5 (Length: 418)
Name: NF5953_high_5
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 189 - 410
Target Start/End: Original strand, 21794388 - 21794609
Alignment:
| Q |
189 |
ataattaacttttgttgaattgtttttgtgatgaacagtggattttctgggttggtccatttatcggagctgcagtggctgcaatttaccaccaatacat |
288 |
Q |
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| T |
21794388 |
ataattaacttttgttgaattgtttttgtgatgaacagtggattttctgggtcggtccatttattggagctgcagtggctgcaatttaccaccaatacat |
21794487 |
T |
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| Q |
289 |
tttaagaggatcagccattaaagctcttggatccttcaggagcaatgcttaattaaattaagctggctcaattgctttatttgccaaccaagctatgatg |
388 |
Q |
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| T |
21794488 |
tctaagaggatcagccattaaagctcttggatccttcaggagtaacgcttaattaaattaagctagctcaattgctttatttgccaaccaagctatgatg |
21794587 |
T |
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| Q |
389 |
ttaatttctccaaaagaataat |
410 |
Q |
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| T |
21794588 |
ttaatttctccaaaagaataat |
21794609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 21794170 - 21794234
Alignment:
| Q |
31 |
aaagtgacactgataactattttacaactgtttgtttgaggagactttaattaggtttaggtctc |
95 |
Q |
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| T |
21794170 |
aaagtgacactgataactattttacaaccgtttatttgaggagactttgattaggtttaagtctc |
21794234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 40206600 - 40206483
Alignment:
| Q |
224 |
cagtggattttctgggttggtccatttatcggagctgcagtggctgcaatttaccaccaatacattttaagaggatcagccattaaagctcttggatcct |
323 |
Q |
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| T |
40206600 |
cagtggatttattgggttggaccatttattggtgctgctgtggctgcaatttaccaccaatacatccttagaggatcagcaattaaagctcttggatcct |
40206501 |
T |
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| Q |
324 |
tcaggagcaatgcttaat |
341 |
Q |
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| T |
40206500 |
tcaggagcaatgcttaat |
40206483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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