View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_high_6 (Length: 410)
Name: NF5953_high_6
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 25574215 - 25574591
Alignment:
| Q |
13 |
aatattaagagtaatggtgatgaaaattttcaaatgcaccctctataacaaaatatatgtatagatgtaaatcaaatagtgattgtaaggtttttgcctt |
112 |
Q |
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| T |
25574215 |
aatattaagagtaatggtgatgaaaattttcaaatgcaccctctataacaaaatatatgtatagatgtaaatcaaatagtgattgtaaggtttttgcttt |
25574314 |
T |
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| Q |
113 |
atgccattggaatcatttttccatcca-ttttttggcttcaaccttgattcacctccaagaactaccacatgctttcgaacagtttcgttctcatgtcca |
211 |
Q |
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| T |
25574315 |
atgccattggaatcatttt-ccatccacttttttggcttcaaccttgattcaccttcaagaactatcacatgctttcgaacagtttggttctcatgtcca |
25574413 |
T |
|
| Q |
212 |
cctagtaacatatagaacaaaaaggatccagaaaataaacaaaatattatgatctagagttcaagaagtatttgattgttcagtttaaaatcttgaactg |
311 |
Q |
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| T |
25574414 |
cctagtaacatatagaacaaaaaggatccagaaaataaacaaaatattatgatctagagttcaagaagtatttgattgttcagtttaaaatcttgaactg |
25574513 |
T |
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| Q |
312 |
tttaggatccagcagaaatttctcttcaaacaaagtacaacatcatagaatgagttcattcattgtgtgtttggtcaa |
389 |
Q |
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| T |
25574514 |
tttaggatccagcagaaatttctcttcaaacaaagtacaacatcatagaatgagttcattcattgtgtgtttggtcaa |
25574591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 39331237 - 39331292
Alignment:
| Q |
336 |
ttcaaacaaagtacaacatcatagaatgagttcattc--attgtgtgtttggtcaa |
389 |
Q |
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| T |
39331237 |
ttcaaacaaagtacaacatcatagaatgagttcattcatattgtgtgtttggtcaa |
39331292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 31 - 302
Target Start/End: Original strand, 40302130 - 40302396
Alignment:
| Q |
31 |
gatgaaaattttcaaatgcaccctctataacaaaatatatgtatagatgtaaatcaaatagtgattgtaaggtttttgccttatgccattggaatcattt |
130 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||| ||| || |
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| T |
40302130 |
gatgaaaaatttcaaatgcaccctctataacaaaatatatgtatagatgtaaatcatacagtgattataaggtttttgctttatgccattggagtca-tt |
40302228 |
T |
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| Q |
131 |
ttccatcc-attttttggcttcaaccttgattcacctccaagaactaccacatgctttcgaacagtttcgttctcatgtccacctagtaacatatagaac |
229 |
Q |
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| T |
40302229 |
ttccgtccgcttttttggcttcaaccttgattcacctccaagaactaccacatgctttcgaacagtttggttctcatgtctaccta-----ttatagaac |
40302323 |
T |
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| Q |
230 |
aaaaaggatccagaaaataaacaaaatattatgatctagagttcaagaagtatttgattgttcagtttaaaat |
302 |
Q |
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| T |
40302324 |
aaaaaggatccagagaataaacaaaaaattatgatccagagttcaagaagtatttgattgttcaatttaaaat |
40302396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 5538217 - 5538423
Alignment:
| Q |
21 |
gagtaatggtgatgaaaattttcaaatgcaccctctataa-caaaatatatgtatagatgtaaatcaaatagtgattgtaaggtttttgccttatgccat |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
5538217 |
gagtgatggtgatgaaaattttcaaatgcaccctctataaacaaaatatatgtatagatgtaaatcaaatggtgattgtaaggtttttgctttatgccat |
5538316 |
T |
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| Q |
120 |
tggaatcatttttccatcc-attttttggcttcaaccttgattcacctccaagaactaccacatgctttcgaacagtttcgttctcatgtccacctagta |
218 |
Q |
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| T |
5538317 |
tggaatca-ttttccgtccgtttttttggcttcaatcttgattcacctccaagaactatgacatgctttcgaacaatttggttctcatgtccatctagta |
5538415 |
T |
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| Q |
219 |
acatatag |
226 |
Q |
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|||||||| |
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| T |
5538416 |
acatatag |
5538423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 8047946 - 8048071
Alignment:
| Q |
88 |
atagtgattgtaaggtttttgccttatgccattggaatcatttttccatcca-ttttttggcttcaaccttgattcacctccaagaactaccacatgctt |
186 |
Q |
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||||| ||| |||||||||| | ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8047946 |
atagtaattttaaggtttttcctttatgccattggagtcatttc-ccatcctcttttttggcttcaaccttgattcacctccaagaac-accacatgctt |
8048043 |
T |
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| Q |
187 |
tcgaacagtttcgttctcatgtccacct |
214 |
Q |
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| T |
8048044 |
tctaacagtttggttctcatgtacacct |
8048071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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