View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5953_low_10 (Length: 360)

Name: NF5953_low_10
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5953_low_10
NF5953_low_10
[»] chr7 (25 HSPs)
chr7 (5-360)||(4293601-4293960)
chr7 (181-360)||(4290233-4290416)
chr7 (10-162)||(28486615-28486768)
chr7 (10-162)||(24749637-24749790)
chr7 (10-162)||(44725969-44726122)
chr7 (10-157)||(9679708-9679856)
chr7 (23-162)||(1048073-1048213)
chr7 (23-162)||(22136168-22136308)
chr7 (23-162)||(40551195-40551335)
chr7 (23-162)||(20298343-20298483)
chr7 (23-155)||(7350442-7350575)
chr7 (23-162)||(7093245-7093385)
chr7 (10-161)||(24816114-24816265)
chr7 (23-162)||(38395348-38395488)
chr7 (10-160)||(21679109-21679260)
chr7 (23-160)||(31157071-31157209)
chr7 (23-162)||(43603-43743)
chr7 (264-360)||(4259848-4259944)
chr7 (23-162)||(7471101-7471241)
chr7 (10-165)||(44011594-44011750)
chr7 (264-360)||(4265394-4265490)
chr7 (305-360)||(4258517-4258572)
chr7 (264-342)||(4303509-4303587)
chr7 (191-251)||(4259766-4259829)
chr7 (11-78)||(18390955-18391021)
[»] chr5 (15 HSPs)
chr5 (10-162)||(27911473-27911626)
chr5 (10-159)||(659059-659209)
chr5 (10-162)||(18468064-18468217)
chr5 (10-162)||(20504952-20505105)
chr5 (10-162)||(18510499-18510652)
chr5 (23-162)||(15355633-15355773)
chr5 (23-162)||(31544088-31544228)
chr5 (23-162)||(34478203-34478343)
chr5 (23-162)||(23666402-23666542)
chr5 (10-125)||(25806471-25806587)
chr5 (10-97)||(20044013-20044100)
chr5 (48-162)||(10756274-10756389)
chr5 (23-162)||(6746426-6746566)
chr5 (10-98)||(31467039-31467131)
chr5 (11-165)||(29721689-29721841)
[»] chr4 (22 HSPs)
chr4 (10-162)||(22133366-22133519)
chr4 (10-161)||(47563850-47564002)
chr4 (10-162)||(12401842-12401995)
chr4 (10-162)||(14788518-14788671)
chr4 (10-162)||(16454400-16454553)
chr4 (13-162)||(36379324-36379473)
chr4 (10-154)||(12399575-12399720)
chr4 (10-157)||(5099914-5100062)
chr4 (23-162)||(22801857-22801997)
chr4 (10-161)||(36770546-36770698)
chr4 (25-162)||(24879622-24879760)
chr4 (23-162)||(36920618-36920758)
chr4 (23-162)||(22045498-22045638)
chr4 (24-162)||(11007352-11007491)
chr4 (23-159)||(22781524-22781661)
chr4 (23-162)||(9175257-9175397)
chr4 (30-159)||(16932935-16933065)
chr4 (10-96)||(47565703-47565789)
chr4 (23-119)||(18535970-18536066)
chr4 (5-153)||(12740444-12740590)
chr4 (5-153)||(12748650-12748796)
chr4 (11-78)||(8394736-8394802)
[»] chr2 (8 HSPs)
chr2 (10-162)||(6263239-6263392)
chr2 (5-158)||(31733968-31734122)
chr2 (10-162)||(21519443-21519596)
chr2 (23-162)||(35216754-35216894)
chr2 (30-162)||(36559928-36560061)
chr2 (10-130)||(22402349-22402470)
chr2 (23-162)||(19503120-19503260)
chr2 (13-153)||(28569183-28569322)
[»] scaffold0011 (1 HSPs)
scaffold0011 (10-158)||(34935-35084)
[»] chr8 (8 HSPs)
chr8 (10-159)||(15071855-15072005)
chr8 (10-162)||(41383748-41383901)
chr8 (23-162)||(18812118-18812258)
chr8 (23-162)||(43081012-43081152)
chr8 (48-162)||(27828420-27828535)
chr8 (10-119)||(21481592-21481702)
chr8 (10-98)||(17848958-17849045)
chr8 (10-42)||(31577172-31577204)
[»] scaffold0005 (1 HSPs)
scaffold0005 (10-162)||(51059-51212)
[»] chr6 (11 HSPs)
chr6 (10-162)||(3395353-3395506)
chr6 (10-162)||(3631028-3631181)
chr6 (23-162)||(33310244-33310384)
chr6 (23-162)||(15533722-15533862)
chr6 (23-162)||(26067181-26067319)
chr6 (9-153)||(11137448-11137591)
chr6 (9-86)||(30444664-30444740)
chr6 (11-162)||(16553994-16554143)
chr6 (11-162)||(16630550-16630699)
chr6 (11-162)||(16652256-16652405)
chr6 (13-91)||(16568284-16568361)
[»] chr3 (18 HSPs)
chr3 (10-162)||(42991319-42991472)
chr3 (10-162)||(3315702-3315855)
chr3 (10-162)||(28101093-28101246)
chr3 (10-158)||(53916763-53916912)
chr3 (10-162)||(18097917-18098070)
chr3 (10-159)||(43422558-43422708)
chr3 (10-162)||(890992-891145)
chr3 (23-162)||(43227414-43227554)
chr3 (48-162)||(28138326-28138441)
chr3 (23-162)||(4309291-4309431)
chr3 (23-162)||(5898746-5898886)
chr3 (23-162)||(457241-457381)
chr3 (23-159)||(6064581-6064717)
chr3 (10-98)||(23634783-23634871)
chr3 (23-162)||(11169435-11169575)
chr3 (10-119)||(25634851-25634960)
chr3 (23-162)||(10957107-10957247)
chr3 (13-78)||(4599503-4599567)
[»] chr1 (17 HSPs)
chr1 (10-158)||(28202450-28202599)
chr1 (10-162)||(14099010-14099163)
chr1 (10-161)||(50077880-50078032)
chr1 (10-158)||(6996625-6996774)
chr1 (10-165)||(25249734-25249890)
chr1 (23-162)||(51751392-51751532)
chr1 (23-162)||(16227523-16227663)
chr1 (48-162)||(31736596-31736711)
chr1 (48-162)||(47178742-47178857)
chr1 (23-162)||(27337914-27338054)
chr1 (23-160)||(20301486-20301624)
chr1 (10-162)||(31424119-31424272)
chr1 (10-98)||(16429988-16430076)
chr1 (13-87)||(28997416-28997490)
chr1 (13-87)||(29003132-29003206)
chr1 (73-162)||(28841762-28841852)
chr1 (10-159)||(13126490-13126639)
[»] scaffold1674 (1 HSPs)
scaffold1674 (23-162)||(572-712)
[»] scaffold1899 (1 HSPs)
scaffold1899 (23-162)||(979-1119)
[»] scaffold0140 (1 HSPs)
scaffold0140 (23-162)||(23482-23622)
[»] scaffold0025 (1 HSPs)
scaffold0025 (48-159)||(70315-70427)
[»] scaffold0004 (1 HSPs)
scaffold0004 (10-54)||(80907-80951)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 5 - 360
Target Start/End: Complemental strand, 4293960 - 4293601
Alignment:
Q  5 gtgagaagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgatt 104  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4293960 gtgacaagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgatt 4293861  T
Q  105 acgcatttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccggaaagcaagaatcaactatgtttgttgtgtcctcaggaaagca 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4293860 acgcatttgctagtttaggtagagtacgctaagcttgaggtggagttgaacacaccggaaagcaagaatcaactatgtttgttgtatcctcaggaaagca 4293761  T
Q  205 agaatcaactacaccttcattcat----agatcttccatttttcttgtactnnnnnnntgacgaaaatcatagaaattttcaatgcagaaccatcattgc 300  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||  |    
T  4293760 agaatcaactacaccttcattcatcttacgatcttccatttttcttgtactaaaaaaatgacgaaaatcatagaaattttcaatgtagaaccatcatcac 4293661  T
Q  301 aagtagaactaccttcagaaacatcacttcctcttcctttctttgacatattatggttaa 360  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4293660 aagtagaactaccttcagaaacatcacttcctcttactttctttgacatattatggttaa 4293601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 181 - 360
Target Start/End: Complemental strand, 4290416 - 4290233
Alignment:
Q  181 gtttgttgtgtcctcaggaaagcaagaatcaactacaccttcattcata----gatcttccatttttcttgtactnnnnnnntgacgaaaatcatagaaa 276  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||     |||||||||||||||||||||        ||||||||||||||||||    
T  4290416 gtttgttgtgtcctcagaaaagcaagaatcaactacaccttcattcatcttacgatcttccatttttcttgtacaaaaaaaatgacgaaaatcatagaaa 4290317  T
Q  277 ttttcaatgcagaaccatcattgcaagtagaactaccttcagaaacatcacttcctcttcctttctttgacatattatggttaa 360  Q
    ||||||||| || ||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4290316 ttttcaatgtagcaccatcatcacaagtagaactaccttcagaaacatcacttcctcttactttctttgacatattatggttaa 4290233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 28486615 - 28486768
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  28486615 aagaatactcatgatcagtctggagaggcggaggcaaaaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 28486714  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  28486715 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 28486768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 24749637 - 24749790
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| || ||    
T  24749637 aagaatactcatgatcagtctggagaggcggatgcaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtatgc 24749736  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||| |||||| ||||||||||| || ||| |||||| ||||||||||||||||    
T  24749737 attttctagttaaggtagagtacactcagcgtgaggtggagttgaacacaccgg 24749790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 44725969 - 44726122
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||| ||||||||||| |||  ||||||||||||||||||||||| ||||||||||| ||||||||||||||  ||| |||||    
T  44725969 aagaatactcatgatcagtcttgagaggcggaggcaatgatactcatgatctacctgttgaggtggagtttcaaagttgaagacatagtgggatgtacgc 44726068  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  44726069 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 44726122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 9679708 - 9679856
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||  ||| |||||    
T  9679708 aagaatactcatgatcagtctggagaggtggaggcaacaatactcatgatcaacttgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 9679807  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacac 157  Q
    ||||||||||| |||||||||||||| ||| |||||| |||||||||||    
T  9679808 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacac 9679856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 1048213 - 1048073
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  1048213 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 1048114  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  1048113 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 1048073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 22136168 - 22136308
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  22136168 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 22136267  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  22136268 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 22136308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 40551195 - 40551335
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  40551195 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 40551294  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  40551295 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 40551335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 20298343 - 20298483
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  ||||||||||||||||||||||||||  |||||||||||||| |||||||||||  ||| |||||||||||||||| |    
T  20298343 atcagcctggagaggcggtggtaacaatactcatgatctacctgttgatgtggagtttcaaggtggaagacatagtgagatgtacgcatttgctagttga 20298442  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  20298443 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 20298483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 7350575 - 7350442
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  7350575 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 7350476  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaac 155  Q
    ||||||||||||| ||| |||||| |||||||||    
T  7350475 ggtagagtacgctcagcgtgaggtggagttgaac 7350442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 7093385 - 7093245
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| ||||||| |||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  7093385 atcagcctggagatgcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgagatgtacgcatttgctagttga 7093286  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| | | |||||| ||||||||||||||||    
T  7093285 ggtagagtacgctcaacgtgaggtggagttgaacacaccgg 7093245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 24816265 - 24816114
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||| ||| | |||||||||||||  |||||||| |||||||||| | ||||| |||||||||||||| |||||||||||  ||| || ||    
T  24816265 aagaatactcatggtcactttggagaggcggaggtaacaatacccatgatctacat-ttgaggtggagtttcaaggtggaagacatagtgggatgtatgc 24816167  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccg 161  Q
    ||||||||||| | |||||||||||| |||||||||| |||||||||||||||    
T  24816166 atttgctagttgaagtagagtacgctcagcttgaggtggagttgaacacaccg 24816114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 38395348 - 38395488
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||| ||| |  || |||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||| |||||||||||||||| |    
T  38395348 atcagcctggagagacggtggtaagaatactcatgatctacctgttgaggtggggtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 38395447  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||| ||||||| ||| |||||| ||||||||||||||||    
T  38395448 ggtagggtacgctcagcgtgaggtggagttgaacacaccgg 38395488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 21679109 - 21679260
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    |||||||||||||||||||  ||||||||||||  | ||||||||||||||||| |||| || |||||||||||||||||||||||| |  ||| ||| |    
T  21679109 aagaatactcatgatcagttcggagaggcggaggaaccaatactcatgatctacttgttaagatggagtttcaaggttgaagacataatgggatatacac 21679208  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacacc 160  Q
    |||| |||||| ||||||||||| || ||| |||||| ||||||||||||||    
T  21679209 attttctagttgaggtagagtacactcagcgtgaggtggagttgaacacacc 21679260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 31157209 - 31157071
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||| ||||||| ||||||||||||||||||||||||||  ||| ||||||||| |||||| |    
T  31157209 atcagcctggagaggcggtggtaagaatactcatgatctacttgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcattttctagttga 31157110  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacacc 160  Q
    ||||||||||||| ||| |||||| || |||||||||||    
T  31157109 ggtagagtacgctcagcgtgaggtggacttgaacacacc 31157071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 43603 - 43743
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| ||| |||||||| |  || |||| ||||||||||||||||||| | ||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  43603 atcagcctgcagaggcggtggtaagaataatcatgatctacctgttgaggttgagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 43702  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||| | ||||||||||||||||    
T  43703 ggtagagtacgctcagcgtgagatggagttgaacacaccgg 43743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 264 - 360
Target Start/End: Original strand, 4259848 - 4259944
Alignment:
Q  264 aaaatcatagaaattttcaatgcagaaccatcattgcaagtagaactaccttcagaaacatcacttcctcttcctttctttgacatattatggttaa 360  Q
    |||||||||||||||||||||| || |||||| |  |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  4259848 aaaatcatagaaattttcaatgtagcaccatcttcacaagtagaactaccttcagaaacatcacttcctcttactttctttgacatactatggttaa 4259944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 7471241 - 7471101
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||| | |||||||||||||||||||||| |||  ||| |||||||||||||||| |    
T  7471241 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgtggtggagtttcaaggttgaagacaaagtgggatgtacgcatttgctagttga 7471142  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    || |||||||||| ||| |||||| | ||||||||||||||    
T  7471141 ggcagagtacgctcagcgtgaggtggggttgaacacaccgg 7471101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 44011750 - 44011594
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||| |||||||||||||||||||  |||| |||||||||||||||| ||||  |||||||||||||| ||||| |||||  ||| ||||     
T  44011750 aagaatactcatggtcagtctggagaggcggaggtaacagtactcatgatctacctattgaagtggagtttcaaggtggaagatatagtgtgatgtacgt 44011651  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccggaaa 165  Q
    ||||||||||| ||    || | |||  ||||||||| |||| ||||||||||||||    
T  44011650 atttgctagttaagaggtagaaagctctgcttgaggtggagtcgaacacaccggaaa 44011594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 360
Target Start/End: Original strand, 4265394 - 4265490
Alignment:
Q  264 aaaatcatagaaattttcaatgcagaaccatcattgcaagtagaactaccttcagaaacatcacttcctcttcctttctttgacatattatggttaa 360  Q
    |||||||||||||||||||||| |  |||||| |  || | |||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  4265394 aaaatcatagaaattttcaatgtatcaccatcttcacaggaagaacttcctttagaaacatcacttcctcttactttcttggacatattatggttaa 4265490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 4258572 - 4258517
Alignment:
Q  305 agaactaccttcagaaacatcacttcctcttcctttctttgacatattatggttaa 360  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  4258572 agaacttccttcagaaacatcacttcctcttactttctttgacatactatggttaa 4258517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 4303587 - 4303509
Alignment:
Q  264 aaaatcatagaaattttcaatgcagaaccatcattgcaagtagaactaccttcagaaacatcacttcctcttcctttct 342  Q
    ||||| |||||||||||||||| |  |||||| |  |||| |||||| |||||||||||||||||||||||| ||||||    
T  4303587 aaaattatagaaattttcaatgtatcaccatcttcacaagaagaacttccttcagaaacatcacttcctcttactttct 4303509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 4259766 - 4259829
Alignment:
Q  191 tcctcaggaaagcaagaatcaactacaccttcattca---tagatcttccatttttcttgtact 251  Q
    ||||||| ||| ||||||||||| |||||||||||||   ||| ||||||||||||||||||||    
T  4259766 tcctcagaaaaacaagaatcaacaacaccttcattcatcttagttcttccatttttcttgtact 4259829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 18391021 - 18390955
Alignment:
Q  11 agaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagt 78  Q
    |||||||||||| | ||||||||||||||| |  |||||||||||||||| |||| ||||| ||||||    
T  18391021 agaatactcatggttagtctggagaggcggtgtgaacaatactcatgatcaacct-ttgaggtggagt 18390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 27911473 - 27911626
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  27911473 aagaatactcatgatcagtctagagaggcggagacaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 27911572  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  27911573 atttgctagttaaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 27911626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 659059 - 659209
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||  ||| |||||    
T  659059 aagaataatcatgatcagtctggagaggcggaggcaacaatactcatgatctacctgttgagatggagtttcaagattgaagacatagtgggatgtacgc 659158  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacac 159  Q
    |||| ||||||||||||||||||||| ||| |||||| |||||||||||||    
T  659159 attttctagtttaggtagagtacgctcagcgtgaggtggagttgaacacac 659209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 18468064 - 18468217
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    |||||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  18468064 aagaatacccatgatcagtctggagaggcggaggcaacaacaatcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 18468163  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||| | |||||||||||||| ||| |||||| ||||||||||||||||    
T  18468164 atttgctagctgaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 18468217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 20505105 - 20504952
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  20505105 aagaatactcatgatcagtctcgagaggcggaggcaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 20505006  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| || |||||||| || ||| |||||| |||| |||||||||||    
T  20505005 atttgctagttgagttagagtacactcagcgtgaggtggagtggaacacaccgg 20504952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 18510652 - 18510499
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  18510652 aagaacactcatgatcagtctggagaggcggaggcaaaaatactcataatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 18510553  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| ||||||||||| || ||  |||||| ||||||||||||||||    
T  18510552 atttgctagttgaggtagagtactctcagtgtgaggtggagttgaacacaccgg 18510499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 15355773 - 15355633
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  15355773 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 15355674  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  15355673 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 15355633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 31544088 - 31544228
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  31544088 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 31544187  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  31544188 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 31544228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 34478343 - 34478203
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  34478343 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 34478244  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  34478243 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 34478203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 23666402 - 23666542
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||| ||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  23666402 atcagcctggagaggcggtggtaagaatactcaggatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 23666501  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  23666502 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 23666542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 25806471 - 25806587
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacg-attacgc 108  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | | |||||    
T  25806471 aagaatactcatgatcagtctagagaggcggaggcaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggaagtacgc 25806570  T
Q  109 atttgctagtttaggta 125  Q
    ||||||||||| |||||    
T  25806571 atttgctagttgaggta 25806587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 20044013 - 20044100
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatag 97  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20044013 aagaatactcatgatcagtctggagaggcgaagacaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatag 20044100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 10756274 - 10756389
Alignment:
Q  48 aatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttaggtagagtacgctaagcttgaggta 146  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||| ||| ||| ||||||     
T  10756274 aatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttgaggtagagtatgctcagcgtgaggtg 10756373  T
Q  147 gagttgaacacaccgg 162  Q
    ||||||||| ||||||    
T  10756374 gagttgaactcaccgg 10756389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 6746426 - 6746566
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| ||||||||| || |  || |||||||||||||||||||||||| || |||||||||||||||||||||||  ||| |||||||||||||||| |    
T  6746426 atcagcctggagaggtggtggtaagaatactcatgatctacctgttgaggtgaagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 6746525  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||| ||| | | |||||| ||||||||||||||||    
T  6746526 ggtagagtatgctcaccgtgaggtggagttgaacacaccgg 6746566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 31467131 - 31467039
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgt----tgagctggagtttcaaggttgaagacatagt 98  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||    |||| ||||||||||||||||||||||||||    
T  31467131 aagaatactcatgataagtctggacaggcggaggcaacaatactcataatctacctgttgcatgaggtggagtttcaaggttgaagacatagt 31467039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 29721689 - 29721841
Alignment:
Q  11 agaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgattacgcat 110  Q
    |||||||||||| | ||||||||||||||| || |||||||||| ||||| |||| ||||| ||||||  ||| || |||| ||||||   | ||| |||    
T  29721689 agaatactcatggttagtctggagaggcggtgataacaatactcgtgatcaacct-ttgaggtggagtggcaaagtggaag-catagtggaagtactcat 29721786  T
Q  111 ttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccggaaa 165  Q
    |||  |||| |||||||| | ||| | |||||||| |||||||  ||||||||||    
T  29721787 ttggaagttgaggtagagaaagctcaacttgaggtggagttgatgacaccggaaa 29721841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 22133519 - 22133366
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  22133519 aagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 22133420  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  22133419 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 22133366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 47563850 - 47564002
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||  ||| |||||    
T  47563850 aagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctaccggttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 47563949  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccg 161  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||||||||||    
T  47563950 atttgctagttgaggtagagtacgctcagcttgaggtggagttgaacacaccg 47564002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 12401995 - 12401842
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| |  ||| |||||    
T  12401995 aagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctacttgttgaggtggagtttcaaggttgaagacataatgggatgtacgc 12401896  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||    
T  12401895 atttgctagttgaggtagagtacgctcagcttgaggtggagttgaactcaccgg 12401842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 14788671 - 14788518
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||| |    
T  14788671 aagaatactcatgattagtctagagaggcggagacaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacac 14788572  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  14788571 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 14788518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 16454400 - 16454553
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    |||||||||||||||||| ||||||||| |||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||| || ||    
T  16454400 aagaatactcatgatcagactggagaggtggaagcaacaatactcatgatctacctgttgaggtggtgtttcaaggttgaagacatagtgggatgtatgc 16454499  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||    
T  16454500 atttgctagttgaggtagagtacgctcagcttgaggtggagttgaacacaccgg 16454553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 36379324 - 36379473
Alignment:
Q  13 aatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatt 111  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||| ||| ||||    
T  36379324 aatactcatgatcagtctggagaggcggaggcaacaatactcattatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtac-catt 36379422  T
Q  112 tgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||||||| |||||||||||||| || ||||||| ||||| ||||||||||    
T  36379423 tgctagttgaggtagagtacgctcagtttgaggtggagttaaacacaccgg 36379473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 12399720 - 12399575
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||| |||||||||||||||||  ||||||||||||||||||| |||| || ||||||||||||||||||||||||||  ||| |||||    
T  12399720 aagaatactcatgattagtctggagaggcggagggaacaatactcatgatctacatgttaaggtggagtttcaaggttgaagacatagtgggatgtacgc 12399621  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaa 154  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||    
T  12399620 atttgctagttgaggtagagtacgctcagcttgaggtggagttgaa 12399575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 5099914 - 5100062
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  5099914 aagaatactcatgatcagtctggagaggtggaggcaaaaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 5100013  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacac 157  Q
    |||| |||||| |||||||||||||| ||| |||||| ||||| |||||    
T  5100014 attttctagttgaggtagagtacgctcagcgtgaggtggagttaaacac 5100062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 22801997 - 22801857
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||| |||||||||||| |    
T  22801997 atcagtctggagaggcggaggcaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacacatttgctagttga 22801898  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||||| |||||| ||| |||||| ||||||||||||||||    
T  22801897 ggtagaatacgctcagcgtgaggtggagttgaacacaccgg 22801857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 36770546 - 36770698
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||| ||||||||||||||||||||||||||  ||| | |||    
T  36770546 aagaatactcatgatcagtctggagaggcagaggcaacaatactcatgatctatttgttgagttggagtttcaaggttgaagacatagtgggatgtgcgc 36770645  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccg 161  Q
    ||||||||||| |||||||||| ||| |||||||||| |||||||||| ||||    
T  36770646 atttgctagttgaggtagagtaagcttagcttgaggtggagttgaacagaccg 36770698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 24879622 - 24879760
Alignment:
Q  25 cagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttagg 123  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |||    
T  24879622 cagtctggagaggtggaggcaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttaagg 24879721  T
Q  124 tagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||  ||||| ||||||||||||||||    
T  24879722 tagagtacgctcagcgagaggtggagttgaacacaccgg 24879760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 36920758 - 36920618
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  36920758 atcagtctggagaggcggaggcaacaatattcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 36920659  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| | ||| ||||||  | |||||||||||||    
T  36920658 ggtagagtacgttcagcgtgaggtgcatttgaacacaccgg 36920618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 22045638 - 22045498
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  22045638 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 22045539  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    | ||||||||||| ||| |||||| ||||||||||||||||    
T  22045538 gatagagtacgctcagcgtgaggtggagttgaacacaccgg 22045498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 11007491 - 11007352
Alignment:
Q  24 tcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttag 122  Q
    |||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||||||||| |||||| ||    
T  11007491 tcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcattttctagttgag 11007392  T
Q  123 gtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||||||||||| ||| |||||| ||||||||||||||||    
T  11007391 gtagagtacgctcagcgtgaggtggagttgaacacaccgg 11007352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 22781661 - 22781524
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||| |||||||||||| |    
T  22781661 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacacatttgctagttga 22781562  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacac 159  Q
    ||||||||||||| ||| |||||| |||||||||||||    
T  22781561 ggtagagtacgctcagcgtgaggtggagttgaacacac 22781524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 9175397 - 9175257
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||| ||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  9175397 atcagcctggagaggcggtggtaagaatactcatgatctacctattgaggtggagtttcaaggttgaagacatagtgagatgtacgcatttgctagttga 9175298  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| | | |||||| ||||||||||||||||    
T  9175297 ggtagagtacgctcaacgtgaggtggagttgaacacaccgg 9175257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 16933065 - 16932935
Alignment:
Q  30 tggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttaggtagag 128  Q
    ||||||||||| |  || |||||||||||||||||||||||| ||||||||||||| ||||||||||||  ||| |||||||||||||||| ||||||||    
T  16933065 tggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggctgaagacatagtgggatgtacgcatttgctagttgaggtagag 16932966  T
Q  129 tacgctaagcttgaggtagagttgaacacac 159  Q
    |||||| ||| |||||| |||||||||||||    
T  16932965 tacgctcagcgtgaggtggagttgaacacac 16932935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 47565703 - 47565789
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacata 96  Q
    ||||||| ||||| ||||| |||| ||||| ||  ||||||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  47565703 aagaatattcatggtcagtttggaaaggcgaaggtaacaatactcatgatctacctattgaggtggagtttcaaggtggaagacata 47565789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 18536066 - 18535970
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtt 119  Q
    ||||| |||||||||||| |  || |||| ||||||||||||| ||||| |||||||| ||||||||||||||||| |||| ||||||||| ||||||    
T  18536066 atcagcctggagaggcggtggtaagaatattcatgatctacct-ttgaggtggagttttaaggttgaagacatagtgcgatgtacgcattttctagtt 18535970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 12740590 - 12740444
Alignment:
Q  5 gtgagaagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgatt 104  Q
    |||||||||||||||||| | || |||||||||||| |  |||||||||| ||||| |||| ||||| ||||||| |||||| |||| ||||||  |  |    
T  12740590 gtgagaagaatactcatggttagcctggagaggcggtgtgaacaatactcgtgatcaacct-ttgaggtggagttgcaaggtggaag-catagtgtgtgt 12740493  T
Q  105 acgcatttgctagtttaggtagagtacgctaagcttgaggtagagttga 153  Q
    || ||||||  |||| |||||||| | ||| | ||||||||||||||||    
T  12740492 actcatttggaagttgaggtagagaaagctcaacttgaggtagagttga 12740444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 12748796 - 12748650
Alignment:
Q  5 gtgagaagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgatt 104  Q
    |||||||||||||||||| | || |||||||||||| |  |||||||||| ||||| |||| ||||| ||||||| |||||| |||| ||||||  |  |    
T  12748796 gtgagaagaatactcatggttagcctggagaggcggtgtgaacaatactcgtgatcaacct-ttgaggtggagttgcaaggtggaag-catagtgtgtgt 12748699  T
Q  105 acgcatttgctagtttaggtagagtacgctaagcttgaggtagagttga 153  Q
    || ||||||  |||| |||||||| | ||| | ||||||||||||||||    
T  12748698 actcatttggaagttgaggtagagaaagctcaacttgaggtagagttga 12748650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 8394736 - 8394802
Alignment:
Q  11 agaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagt 78  Q
    |||||||||||||||||||||||||||||| |  || ||||||||||||| |||| ||||| ||||||    
T  8394736 agaatactcatgatcagtctggagaggcggtgtgaataatactcatgatcaacct-ttgaggtggagt 8394802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 6263392 - 6263239
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  6263392 aagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctgcctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 6263293  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||    
T  6263292 atttgctagttgaggtagagtacgctcagcttgaggtggagttgaacacaccgg 6263239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 31734122 - 31733968
Alignment:
Q  5 gtgagaagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat- 103  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||     
T  31734122 gtgataagaatactcatgatcagtctggagaggcggaggtaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatg 31734023  T
Q  104 tacgcatttgctagtttaggtagagtacgctaagcttgaggtagagttgaacaca 158  Q
    |||||||||||||||| ||||||||||| || |||||||||| ||||||||||||    
T  31734022 tacgcatttgctagttgaggtagagtacactcagcttgaggtggagttgaacaca 31733968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 21519596 - 21519443
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||| ||||||||| ||||| ||| |||||||||||||||| ||||||| || || ||||||||||||||||||||  ||| |||||    
T  21519596 aagaatactcatgatcattctggagagccggaggcaaaaatactcatgatctacttgttgaggtgaagcttcaaggttgaagacatagtgggatgtacgc 21519497  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  21519496 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 21519443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 35216894 - 35216754
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  35216894 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 35216795  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  35216794 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 35216754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 36560061 - 36559928
Alignment:
Q  30 tggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttaggtagag 128  Q
    ||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| ||||||||    
T  36560061 tggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttgaggtagag 36559962  T
Q  129 tacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||||| ||| |||||| ||||||||||||||||    
T  36559961 tacgctcagcgtgaggtggagttgaacacaccgg 36559928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 22402349 - 22402470
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||   || |||||    
T  22402349 aagaatattcatgatcagtctggagaggtggaggcaataatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtggaatgtacgc 22402448  T
Q  109 atttgctagtttaggtagagta 130  Q
    |||| |||||| ||||||||||    
T  22402449 attttctagttgaggtagagta 22402470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 19503260 - 19503120
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| ||||||||| || |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  ||||||||||||| | |    
T  19503260 atcagcctggagaggtggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgcacgcatttgctagctga 19503161  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| |||||||| |||||||    
T  19503160 ggtagagtacgctcagcgtgaggtggagttgaatacaccgg 19503120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 28569322 - 28569183
Alignment:
Q  13 aatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgattacgcattt 112  Q
    ||||||||||||||||||| ||||| ||||  || ||||||| ||||| |||| ||||| |||| || ||||||  ||| ||||||  |  |||||||||    
T  28569322 aatactcatgatcagtctgaagaggtggaggtaagaatactcgtgatcaacct-ttgaggtggatttgcaaggtgaaagccatagtgggtgtacgcattt 28569224  T
Q  113 gctagtttaggtagagtacgctaagcttgaggtagagttga 153  Q
    |  |||| |||||||| | ||| ||||| |||| |||||||    
T  28569223 ggaagttgaggtagagaaagctcagcttaaggtggagttga 28569183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 34935 - 35084
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  34935 aagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 35034  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacaca 158  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||    
T  35035 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacaca 35084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 15071855 - 15072005
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||  ||| |||||    
T  15071855 aagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctacctattgaggtggagtttcaaggttgaagacatagtgggatgtacgc 15071954  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacac 159  Q
    ||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  15071955 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacacac 15072005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 41383748 - 41383901
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| | | |    
T  41383748 aagaatactcatgatcagtttggagaggcggaggcaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgagatgtgcac 41383847  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| | |||||||| ||||||||||||||||    
T  41383848 atttgctagttgaggtagagtacgctcatcttgaggtggagttgaacacaccgg 41383901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 18812118 - 18812258
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| ||||| |||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  18812118 atcagcctggaaaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 18812217  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  18812218 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 18812258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 43081012 - 43081152
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||||||||| |||||| |    
T  43081012 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttactagttga 43081111  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  43081112 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 43081152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 27828420 - 27828535
Alignment:
Q  48 aatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttaggtagagtacgctaagcttgaggta 146  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||||| ||| ||||||     
T  27828420 aatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagttggatgtacgcatttgctagttgaggtagagtacgctcagcgtgaggtg 27828519  T
Q  147 gagttgaacacaccgg 162  Q
    ||||||||||||||||    
T  27828520 gagttgaacacaccgg 27828535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 21481592 - 21481702
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacga-ttacgc 108  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||  || |||| |    
T  21481592 aagaatactcatgatcagtctggagaggcggaggtaacaatactcatgatctacctgttgaggtggagtttcaaggtggaagacatagtgggatttacac 21481691  T
Q  109 atttgctagtt 119  Q
    |||||||||||    
T  21481692 atttgctagtt 21481702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 17848958 - 17849045
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagt 98  Q
    ||||||| ||||| |||||||| ||||||||||  || ||||||||||||| |||| ||||| ||||||| ||||||  ||||||||||    
T  17848958 aagaatagtcatggtcagtctgaagaggcggaggtaagaatactcatgatcaacct-ttgaggtggagttgcaaggtgaaagacatagt 17849045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 31577204 - 31577172
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggag 42  Q
    ||||||||||||| |||||||||||||||||||    
T  31577204 aagaatactcatggtcagtctggagaggcggag 31577172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 51059 - 51212
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||| |    
T  51059 aagaatactcatgattagtctagagaggcggagacaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacac 51158  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  51159 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 51212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 3395353 - 3395506
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||  ||| |||||    
T  3395353 aagaatactcatgatcagtctggagaggcggagacaagaatactcatgatctacctgttgaggtggagtttcaaggttgtagacatagtgggatgtacgc 3395452  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| || |||||||| || |||||||||| ||||||||||||||||    
T  3395453 atttgctagttgagctagagtaccctcagcttgaggtggagttgaacacaccgg 3395506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 3631181 - 3631028
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||| |||||    
T  3631181 aagaatagtcatgatcagtctcaagaggtggagacaacaatactcatgatctacctgttgaggtggactttcaaggttgaagacatagtgggatgtacgc 3631082  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| | |||||||| ||||||||||||||||    
T  3631081 atttgctagttgaggtagagtacgctcaacttgaggtggagttgaacacaccgg 3631028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 33310244 - 33310384
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  33310244 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 33310343  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  33310344 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 33310384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 15533862 - 15533722
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| || ||||||||||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||||  ||| ||| ||||| |||||| |    
T  15533862 atcagcctagagaggcggaggcaacaatactcatgatctacctgttaaggtagagtttcaaggttgaagacatagtgggatgtacacattttctagttga 15533763  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  15533762 ggtagagtacgctcagcttgaggtggagttgaacacaccgg 15533722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 26067319 - 26067181
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| || ||||||||||||||||||  |||  ||| |||||||||||||||| |    
T  26067319 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtgaagtttcaaggttgaagac--agtgggatgtacgcatttgctagttga 26067222  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  26067221 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 26067181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 11137448 - 11137591
Alignment:
Q  9 gaagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacg 107  Q
    |||||||||||||| | |||||| |||||||||   || |||||||||| || |||| ||||| ||||||||||||||  ||| ||||||  ||| ||||    
T  11137448 gaagaatactcatggttagtctgaagaggcggatgtaagaatactcatgttcaacct-ttgaggtggagtttcaaggtgaaagtcatagt-ggatgtacg 11137545  T
Q  108 catttgctagtttaggtagagtacgctaagcttgaggtagagttga 153  Q
    | |||||||||| |||||||| |  || |||||| ||| |||||||    
T  11137546 cgtttgctagttcaggtagagaaaactcagcttgtggtggagttga 11137591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 30444664 - 30444740
Alignment:
Q  9 gaagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggt 86  Q
    |||||||| ||||| |||||||| ||||||||||  || ||||||||||||| | || ||||| ||||||||||||||    
T  30444664 gaagaatattcatggtcagtctgaagaggcggaggtaagaatactcatgatcaatct-ttgaggtggagtttcaaggt 30444740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 16553994 - 16554143
Alignment:
Q  11 agaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgattacgcat 110  Q
    |||||||||||| | ||||||||||||||| |  |||||||||| ||||| |||| ||||| ||||||| ||| || |||| ||||||   | ||| |||    
T  16553994 agaatactcatggttagtctggagaggcggtgtgaacaatactcgtgatcaacct-ttgaggtggagttgcaaagtggaag-catagtggaagtactcat 16554091  T
Q  111 ttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||  |||| |||||||| | ||| | |||||||| |||||||  |||||||    
T  16554092 ttggaagttgaggtagagaaagctcaacttgaggtggagttgatgacaccgg 16554143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 16630550 - 16630699
Alignment:
Q  11 agaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgattacgcat 110  Q
    |||||||||||| | ||||||||||||||| |  |||||||||| ||||| |||| ||||| ||||||| ||| || |||| ||||||   | ||| |||    
T  16630550 agaatactcatggttagtctggagaggcggtgtgaacaatactcgtgatcaacct-ttgaggtggagttgcaaagtggaag-catagtggaagtactcat 16630647  T
Q  111 ttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||  |||| |||||||| | ||| | |||||||| |||||||  |||||||    
T  16630648 ttggaagttgaggtagagaaagctcaacttgaggtggagttgatgacaccgg 16630699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 16652256 - 16652405
Alignment:
Q  11 agaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgattacgcat 110  Q
    |||||||||||| | ||||||||||||||| |  |||||||||| ||||| |||| ||||| ||||||| ||| || |||| ||||||   | ||| |||    
T  16652256 agaatactcatggttagtctggagaggcggtgtgaacaatactcgtgatcaacct-ttgaggtggagttgcaaagtggaag-catagtggaagtactcat 16652353  T
Q  111 ttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||  |||| |||||||| | ||| | |||||||| |||||||  |||||||    
T  16652354 ttggaagttgaggtagagaaagctcaacttgaggtggagttgatgacaccgg 16652405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 16568284 - 16568361
Alignment:
Q  13 aatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaag 91  Q
    |||||||||| | ||||||||||||||| |  |||||||||| ||||| |||| ||||| ||||||| |||||| ||||    
T  16568284 aatactcatggttagtctggagaggcggtgtgaacaatactcgtgatcaacct-ttgaggtggagttacaaggtggaag 16568361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 42991319 - 42991472
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||  ||| |||||    
T  42991319 aagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctacctattgaggtggagtttcaaggttaaagacatagtgggatgtacgc 42991418  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  42991419 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 42991472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 3315702 - 3315855
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  3315702 aagaatactcatgatcagtctggagaggcggaggcaagaatactcatgatcttcctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 3315801  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| |||||||||||||| |||||||| | ||||| || |||||||    
T  3315802 atttgctagttgaggtagagtacgctcagcttgagctggagtttaaaacaccgg 3315855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 28101246 - 28101093
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||  ||| |||| ||||||||||||||||||| ||||||||||||||||||||||| ||  ||| |||||    
T  28101246 aagaatactcatgatcagtctggagaggcggatgcaataatattcatgatctacctgttgaggtggagtttcaaggttgaagacatggtgggatgtacgc 28101147  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||| |||||| |||||||||||||| |||||||||| ||||||||||||||||    
T  28101146 attttctagttaaggtagagtacgctcagcttgaggtggagttgaacacaccgg 28101093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 53916912 - 53916763
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||||  ||| |||||    
T  53916912 aagaatactcatgatcagtctggagaggcggaggcaaaaatactcatgatctacctgttgaggtggagtttcaaggtggaagacatagtgagatgtacgc 53916813  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacaca 158  Q
    ||||||||||| || ||||||||||| ||| |||||| ||||||||||||    
T  53916812 atttgctagttgagttagagtacgctcagcgtgaggtggagttgaacaca 53916763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 18098070 - 18097917
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||||||||||||||||  ||| |||||    
T  18098070 aagaatactcatgatcagtctggagaggcggaggcaaaaatactcatgatctacctgttgaggtggagtttgaaggttgaagacatagtgggatgtacgc 18097971  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||| |||||| |||||||||||||| ||| |||||| || || ||||||||||    
T  18097970 attttctagttgaggtagagtacgctcagcatgaggtggaatttaacacaccgg 18097917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 43422708 - 43422558
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||| ||||     
T  43422708 aagaatactcatgatcagtctggagatgcggaggtaacaatactcattatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgt 43422609  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacac 159  Q
    |||||||| || |||||||||||||| | |||||||| |||||||||||||    
T  43422608 atttgctaattgaggtagagtacgctcaacttgaggtggagttgaacacac 43422558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 891145 - 890992
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |  ||| ||| |    
T  891145 aagaatactcatgattagtctggagaggcggagacaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacataatgggatgtacac 891046  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||| || ||| | |||||| || || |||||||||| ||||||||||||||||    
T  891045 attttctcgttgatgtagagcactctcagcttgaggtggagttgaacacaccgg 890992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 43227414 - 43227554
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| || ||||||||||||| |    
T  43227414 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagttggatgtatgcatttgctagttga 43227513  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  43227514 ggtagagtacgctcagcgtgaggtagagttgaacacaccgg 43227554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 28138441 - 28138326
Alignment:
Q  48 aatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttaggtagagtacgctaagcttgaggta 146  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||||| ||||||||||     
T  28138441 aatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttgaggtagagtacgctcagcttgaggtg 28138342  T
Q  147 gagttgaacacaccgg 162  Q
    ||||||||||||||||    
T  28138341 gagttgaacacaccgg 28138326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 4309431 - 4309291
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  4309431 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 4309332  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| | | |||||| ||||||||||||||||    
T  4309331 ggtagagtacgctcaacgtgaggtggagttgaacacaccgg 4309291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 5898746 - 5898886
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  5898746 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 5898845  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||||||||| || ||| |||||| ||||||||||||||||    
T  5898846 ggtagagtacactcagcgtgaggtggagttgaacacaccgg 5898886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 457241 - 457381
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| || |||||||| |||| |    
T  457241 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtatgcatttgccagttga 457340  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  457341 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 457381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 6064717 - 6064581
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || ||||||| |||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  6064717 atcagcctggagaggcggtggtaagaatactc-tgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 6064619  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacac 159  Q
    ||||||||||||| ||| |||||| |||||||||||||    
T  6064618 ggtagagtacgctcagcgtgaggtggagttgaacacac 6064581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 23634783 - 23634871
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagt 98  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  23634783 aagaatactcatgatcagtctggagaggcggaggtaacaatactcatgatctacctgttgagggggagttttaaggttgaagacatagt 23634871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 11169435 - 11169575
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||| | ||||||||||||||||||||||| ||  ||| ||||||||| |||||| |    
T  11169435 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgcggtggagtttcaaggttgaagacatggtgggatgtacgcattttctagttga 11169534  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||||||||| || | | |||||| ||||||||||||||||    
T  11169535 ggtagagtacactcaacgtgaggtggagttgaacacaccgg 11169575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 25634851 - 25634960
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||| ||||  |||||||||||||| |||||||||||  ||| |||||    
T  25634851 aagaatactcatggtcagtctggagagacggaggtaacaatactcatgatctacct-ttgacgtggagtttcaaggtggaagacatagtgggatgtacgc 25634949  T
Q  109 atttgctagtt 119  Q
    |||||||||||    
T  25634950 atttgctagtt 25634960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 10957247 - 10957107
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || ||||||||||||||||| |||||| ||||||||||||||||||||||||||  ||| || |||||| |||||| |    
T  10957247 atcagcctggagaggcggtggtaagaatactcatgatctaccagttgaggtggagtttcaaggttgaagacatagtgggatgtatgcattttctagttga 10957148  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    |||||||||| || ||| ||||||  |  ||||||||||||    
T  10957147 ggtagagtacactcagcgtgaggtgaaaatgaacacaccgg 10957107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 4599567 - 4599503
Alignment:
Q  13 aatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagt 78  Q
    |||||||||| ||||||||||||||||| |  |||||||||| ||||| |||| ||||| ||||||    
T  4599567 aatactcatggtcagtctggagaggcggtggtaacaatactcgtgatcaacct-ttgaggtggagt 4599503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 28202599 - 28202450
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||  ||| | |||    
T  28202599 aagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctacctattgaggtggagtttcaaggttgaagacatagtgggatgttcgc 28202500  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacaca 158  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  28202499 atttgctagttgaggtagagtacgctcagcttgaggtggagttgaacaca 28202450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 14099163 - 14099010
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||| |    
T  14099163 aagaatactcatgatcagtctgaagaggcggaggcaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacac 14099064  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| ||| |||||||||| ||| |||||| ||||||||||||||||    
T  14099063 atttgctagttgaggcagagtacgctcagcgtgaggtggagttgaacacaccgg 14099010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 50078032 - 50077880
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||| || ||    
T  50078032 aagaatactcatgatcagtctggagaggcggaggcaacaatactcatgatctacctgttgaggtggagcttcaaggttgaagacataataggatgtatgc 50077933  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccg 161  Q
    ||||||||||| ||||||||||| || ||| |||||| |||||||||||||||    
T  50077932 atttgctagttgaggtagagtacactcagcgtgaggtggagttgaacacaccg 50077880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 6996625 - 6996774
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||  ||| |||||    
T  6996625 aagaatactcatgatcagtctagagaggcggaggcaacagtactcatgatctacattttgaggtggagtttcaaggttgaagacatagtgggatgtacgc 6996724  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacaca 158  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||||||||||    
T  6996725 atttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacaca 6996774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 25249890 - 25249734
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||||||||||  ||| ||| |    
T  25249890 aagaatactaatgatcagtctggagaggcggaggcaacaatactcatgatctacctgttgagttggagttttaaggtggaagacatagtgggatgtacac 25249791  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccggaaa 165  Q
    |||||||| || ||||||||||| ||   |||||||| |||||||||||||||||||    
T  25249790 atttgctaattgaggtagagtacactctacttgaggtggagttgaacacaccggaaa 25249734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 51751392 - 51751532
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  51751392 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 51751491  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  51751492 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 51751532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 16227523 - 16227663
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| |||||||||||||||||||| |||||  ||| |||||||||||||||| |    
T  16227523 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagatatagtgggatgtacgcatttgctagttga 16227622  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  16227623 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 16227663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 31736711 - 31736596
Alignment:
Q  48 aatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttaggtagagtacgctaagcttgaggta 146  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||||| ||| ||||||     
T  31736711 aatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttgaggtagagtacgctcagcgtgaggtg 31736612  T
Q  147 gagttgaacacaccgg 162  Q
    ||||||||||||||||    
T  31736611 gagttgaacacaccgg 31736596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 47178742 - 47178857
Alignment:
Q  48 aatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttaggtagagtacgctaagcttgaggta 146  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||||| ||| ||||||     
T  47178742 aatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttgaggtagagtacgctcagcgtgaggtg 47178841  T
Q  147 gagttgaacacaccgg 162  Q
    ||||||||||||||||    
T  47178842 gagttgaacacaccgg 47178857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 27338054 - 27337914
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| || ||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  27338054 atcagcctagagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 27337955  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| |||  ||||| ||||||||||||||||    
T  27337954 ggtagagtacgctcagcgcgaggtggagttgaacacaccgg 27337914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 20301486 - 20301624
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||| ||| ||||||||||||||||||||||||||  ||| ||| |||||||||||| |    
T  20301486 atcagcctggagaggcggtggtaagaatactcatgatctacctgtcgaggtggagtttcaaggttgaagacatagtgggatgtacacatttgctagttga 20301585  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacacc 160  Q
    ||||||||||||| ||| |||||| ||||||||||||||    
T  20301586 ggtagagtacgctcagcgtgaggtggagttgaacacacc 20301624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 31424272 - 31424119
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||| ||||| |  ||| |||||    
T  31424272 aagaatactcatgatcagtctggagaggcggaggcaacaatactcattatctacctgttgaggtagagtttcaaggttgaacacataatgggatgtacgc 31424173  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||| ||     | | ||| |||||||||| ||||||||||||||||    
T  31424172 atttgctagttgagaggttggaagctcagcttgaggtggagttgaacacaccgg 31424119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 16429988 - 16430076
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagt 98  Q
    ||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16429988 aagaatactcatggtcagtctggagaggcggatgtaacaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagt 16430076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 28997490 - 28997416
Alignment:
Q  13 aatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggtt 87  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  28997490 aatactcatgatcagtctggagaggcggaggcaacaatacgcatgatctacctgttgaggtggagtttcaaggtt 28997416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 29003206 - 29003132
Alignment:
Q  13 aatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggtt 87  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  29003206 aatactcatgatcagtctggagaggcggaggcaacaatacgcatgatctacctgttgaggtggagtttcaaggtt 29003132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 28841762 - 28841852
Alignment:
Q  73 tggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  28841762 tggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttgaggtagagtacgctcagcgtgaggtggagttgaacacaccgg 28841852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 13126639 - 13126490
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgc 108  Q
    ||||||||| ||| | |||||| ||||||||||  || ||||||  | |||||||| || || |||||||||||||| |||||||||||  ||| |||||    
T  13126639 aagaatacttatggttagtctgaagaggcggaggtaagaatacttgtaatctacct-ttaaggtggagtttcaaggtggaagacatagtgggatgtacgc 13126541  T
Q  109 atttgctagtttaggtagagtacgctaagcttgaggtagagttgaacacac 159  Q
    |||||  |||| |||||||| | ||| |||| ||||| |||||||||||||    
T  13126540 atttggaagttgaggtagagaaagctcagctagaggtggagttgaacacac 13126490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 712 - 572
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  712 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 613  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| | | |||||| ||||||||||||||||    
T  612 ggtagagtacgctcaacgtgaggtggagttgaacacaccgg 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 979 - 1119
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||| ||||||||| || |    
T  979 atcagcctggagaggcggtggtaagaatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacacatttgctaattga 1078  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  1079 ggtagagtacgctcagcgtgaggtggagttgaacacaccgg 1119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 23482 - 23622
Alignment:
Q  23 atcagtctggagaggcggagacaacaatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagttta 121  Q
    ||||| |||||||||||| |  || |||||||| ||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |    
T  23482 atcagcctggagaggcggtggtaagaatactcaggatctacctgttgaggtggagtttcaaggttgaagacatagtgggatgtacgcatttgctagttga 23581  T
Q  122 ggtagagtacgctaagcttgaggtagagttgaacacaccgg 162  Q
    ||||||| ||||| ||| |||||| ||||||||||||||||    
T  23582 ggtagagcacgctcagcgtgaggtggagttgaacacaccgg 23622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 70427 - 70315
Alignment:
Q  48 aatactcatgatctacctgttgagctggagtttcaaggttgaagacatagtacgat-tacgcatttgctagtttaggtagagtacgctaagcttgaggta 146  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||||| | | ||||||     
T  70427 aatactcatgatctacctgttgaggtggagtttcaaggttgaagacatagtgagatgtacgcatttgctagttgaggtagagtacgctcatcgtgaggtg 70328  T
Q  147 gagttgaacacac 159  Q
    |||||||||||||    
T  70327 gagttgaacacac 70315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 80907 - 80951
Alignment:
Q  10 aagaatactcatgatcagtctggagaggcggagacaacaatactc 54  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  80907 aagaatactcatgatcagtctggagaggcggaggcaacaatactc 80951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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