View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_11 (Length: 351)
Name: NF5953_low_11
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 5460588 - 5460917
Alignment:
| Q |
13 |
acaatgtacaccagaaattgtgttagcttgaccagtaatcataattccaatattagcagaaaaaatcacaacatcagtaattgcattatcattcccgtga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5460588 |
acaatgtacaccagaaattgtgttagcttgaccagtaatcataattccaatattagcagaaaaaatcacaacatcagtaattgcattatcattcccttga |
5460687 |
T |
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| Q |
113 |
agactaattccaatgcctgaaaattttctttcatttttgtcacctcctgcagttatgtgttgaccaatgaaagtgtttctaatgtatgtttcatgaccac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5460688 |
agactaattccaatgcctgaaaattttctttcatttttgtcacctcctgcagttatgtgttgaccaatgaaagtgtttctaatgtatgtttcatgaccac |
5460787 |
T |
|
| Q |
213 |
tttggactaaaattccatttgtgatgaaatgtgtgatgtaacaattgtctatgttgattcttagtgaatttgtgattgaaattcctccacctttgaagtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5460788 |
tttggactaaaattccatttgtgatgaaatgtgtgatgtaacaattgtctatgttgattcttagtgaatttgtgattgaaattcctccacctttgaagtt |
5460887 |
T |
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| Q |
313 |
tgagtctagaaagagatccttgagtattat |
342 |
Q |
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| T |
5460888 |
tgagtctagaaagagatccttgagtgttat |
5460917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 15160478 - 15160155
Alignment:
| Q |
13 |
acaatgtacaccagaaattgtgttagcttgaccagtaatcataattccaatattagcagaaaaaatcacaacatcagtaattgcattatcattcccgtga |
112 |
Q |
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||||||||||||||||| |||||| ||||||||||| | ||| ||||| ||| |||||| ||||| |||||||| || | |||||||| || || || |
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| T |
15160478 |
acaatgtacaccagaaaatgtgtttgcttgaccagttaccatgattcctatagcagcagagaaaattacaacatcggtgacagcattatcgttaccttgg |
15160379 |
T |
|
| Q |
113 |
agactaattccaatgcctgaaaattttctttcatttttgtcacctcctgcagttatgtgttgaccaatgaaagtgtttctaatgtatgtttcatgaccac |
212 |
Q |
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| | ||||| ||||||| || || ||||| ||||| || ||||| ||||||||||| || |||| ||||| |||||| |||||||||||||| |||| |
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| T |
15160378 |
atgtttattcctgtgcctgagaaattcctttcgtttttatcgcctccggcagttatgtgctggccaaggaaagagtttcttatgtatgtttcatggccac |
15160279 |
T |
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| Q |
213 |
tttggactaaaattccatttgtgatgaaatgtgtgatgtaacaattgtctatgttgattcttagtgaatttgtgattgaaattcctccacctttgaagtt |
312 |
Q |
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||||||||||||||||||| || |||||||||| |||||||||||||||||||| |||| ||||||||| ||| |||||| ||||| ||| | ||||| |
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| T |
15160278 |
tttggactaaaattccattggtagtgaaatgtgtaatgtaacaattgtctatgtttgttctgagtgaatttatgactgaaatgcctcctcctctaaagtt |
15160179 |
T |
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| Q |
313 |
tgagtctagaaagagatccttgag |
336 |
Q |
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||| || | |||||||||||||| |
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| T |
15160178 |
tgaatccaataagagatccttgag |
15160155 |
T |
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