View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_14 (Length: 325)
Name: NF5953_low_14
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 2196461 - 2196769
Alignment:
| Q |
1 |
gagaattctgaaggtgcacgaaccacaccatctgtggttgccttcactcagaaaggggagctgcttgtaggcacaccagccaagcgtcaggctgtaacta |
100 |
Q |
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| T |
2196461 |
gagaattctgaaggtgcacgaaccacaccatccgtggttgccttcactcagaaaggggagctgcttgtaggcacaccagccaagcgtcaggctgtaacta |
2196560 |
T |
|
| Q |
101 |
acccagaaaacactatctctggtgccaagcgtttgattggtaggcgatttgatgatgctcaaactcaaaaagagatgaaaatggttccatacaagattgt |
200 |
Q |
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| T |
2196561 |
acccagaaaacactatctctggtgccaagcgtttgattggtaggcgatttgatgatcctcaaactcaaaaagagatgaaaatggttccatacaagattgt |
2196660 |
T |
|
| Q |
201 |
taaggctccaaatggagatgcatgggttgaagctaaagggcagcagtattcacctagccagattggtgccttcgttctcaccaaaatgaaggaaactgca |
300 |
Q |
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| T |
2196661 |
taaggctccaaatggagatgcatgggttgaagctaaagggcagcagtattcacctagccagattggtgccttcgttctcaccaaaatgaaggaaactgca |
2196760 |
T |
|
| Q |
301 |
gaagcttat |
309 |
Q |
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||||||||| |
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| T |
2196761 |
gaagcttat |
2196769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 36881367 - 36881069
Alignment:
| Q |
1 |
gagaattctgaaggtgcacgaaccacaccatctgtggttgccttcactcagaaaggggagctgcttgtaggcacaccagccaagcgtcaggctgtaacta |
100 |
Q |
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|||||||||||||| || || || |||||||| ||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||||||||||| | |
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| T |
36881367 |
gagaattctgaaggagctcggacaacaccatcagtggttgccttcaaccagaaaggagagctgcttgttggtacacctgccaagcgtcaggctgtaacca |
36881268 |
T |
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| Q |
101 |
acccagaaaacactatctctggtgccaagcgtttgattggtaggcgatttgatgatgctcaaactcaaaaagagatgaaaatggttccatacaagattgt |
200 |
Q |
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| T |
36881267 |
acccaacaaatactctttttggcaccaaacgtttgattggtaggcgctttgatgatccgcaaacacaaaaggagatgaaaatggtaccctataagattgt |
36881168 |
T |
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| Q |
201 |
taaggctccaaatggagatgcatgggttgaagctaaagggcagcagtattcacctagccagattggtgccttcgttctcaccaaaatgaaggaaactgc |
299 |
Q |
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|||||| || ||||||||||||||||||||| || |||||||||||| || ||||| |||||||| || ||||| || || |||||||||||||| |
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| T |
36881167 |
taaggcacccaatggagatgcatgggttgaaatcaataagcagcagtattctcccagccaaattggtgcttttgttcttactaagatgaaggaaactgc |
36881069 |
T |
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