View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_15 (Length: 315)
Name: NF5953_low_15
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 109 - 283
Target Start/End: Original strand, 3558688 - 3558865
Alignment:
| Q |
109 |
acaatacatcggtgtaatttaatcattcttataatttattcttttttattgtgagagatgagagaattaaaattataggtcgtggatcaacattaacgat |
208 |
Q |
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| T |
3558688 |
acaatacatcggtgtaatttaatcattcttataatttattcttttttattgtgagagatgagagaattaaaattataggtcgtggatcaacattaacgat |
3558787 |
T |
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| Q |
209 |
acggatgaaatttaaaaatgtacatatgcgtatgcagtcaatttattttcttctt---tagaaatgatatttgtacaa |
283 |
Q |
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| T |
3558788 |
acggataaaatttaaaaatgtacctatgcgtatgcagtcaaattattttcttctttaatagaaatgatatttatacaa |
3558865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 3558627 - 3558704
Alignment:
| Q |
17 |
aaaatttacatgagtaacctttctgatataaatttacaatccaacggttagcattgatgtaacaatacatcggtgtaa |
94 |
Q |
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| T |
3558627 |
aaaatttacatgaataatctttctgatataaacttacaatccaaaagttagcattgatgtaacaatacatcggtgtaa |
3558704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 302
Target Start/End: Original strand, 34592080 - 34592115
Alignment:
| Q |
267 |
aaatgatatttgtacaacttttgtgataactttctc |
302 |
Q |
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| T |
34592080 |
aaatgatatttgtacaacttttgtgacaactttctc |
34592115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 23553833 - 23553796
Alignment:
| Q |
265 |
agaaatgatatttgtacaacttttgtgataactttctc |
302 |
Q |
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| T |
23553833 |
agaaatgatatttgaacaacttttgtgacaactttctc |
23553796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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