View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_16 (Length: 313)
Name: NF5953_low_16
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 299
Target Start/End: Complemental strand, 4290023 - 4289752
Alignment:
| Q |
28 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgaccaag |
127 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
4290023 |
gaatctcatgctgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4289924 |
T |
|
| Q |
128 |
cttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
227 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289923 |
cttctgttttggctcttcaagttaccatttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4289824 |
T |
|
| Q |
228 |
ttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttg |
299 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289823 |
ttttatcaaatcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttg |
4289752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 28 - 299
Target Start/End: Original strand, 4260154 - 4260425
Alignment:
| Q |
28 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgaccaag |
127 |
Q |
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||||||||||||| |||||||||||| |||| |||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
4260154 |
gaatctcatgctgatttcaatcatttctctggtaagaatctttctgaagctacacagattcatgattttttacctaacttgaatatttctcatgatcaag |
4260253 |
T |
|
| Q |
128 |
cttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
227 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260254 |
cttcttttttggctcttcaagttactttttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4260353 |
T |
|
| Q |
228 |
ttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttg |
299 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
4260354 |
ttttatcaaatcttgggcttacctatgtagaaagcttgaaattgaagtatctgaattagtattacccctttg |
4260425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 28 - 299
Target Start/End: Original strand, 4265700 - 4265971
Alignment:
| Q |
28 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgaccaag |
127 |
Q |
| |
|
|||||| |||||| |||||||||| | || | |||||||||| | ||||| | |||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
4265700 |
gaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4265799 |
T |
|
| Q |
128 |
cttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
227 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265800 |
cttctattttggctcttcaagttactctttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4265899 |
T |
|
| Q |
228 |
ttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttg |
299 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
4265900 |
ttttatcaaatcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagaattacccctttg |
4265971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 4285312 - 4285109
Alignment:
| Q |
9 |
gacatcatcacatacatcagaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttg |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4285312 |
gacatcatcacatacttcagaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttg |
4285213 |
T |
|
| Q |
109 |
aatatttcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttag |
208 |
Q |
| |
|
|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
4285212 |
aatatttcacatgatcaagctactgttttggctcttcaagttactgtttttccaaactatggattttcaatgggcattacttcacatcatgctgttttag |
4285113 |
T |
|
| Q |
209 |
atgg |
212 |
Q |
| |
|
|||| |
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|
| T |
4285112 |
atgg |
4285109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 28 - 283
Target Start/End: Complemental strand, 4298607 - 4298352
Alignment:
| Q |
28 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgaccaag |
127 |
Q |
| |
|
|||||| || ||| ||||||| || |||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
4298607 |
gaatctgattctgatttcaattatctatctggtaagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4298508 |
T |
|
| Q |
128 |
cttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
227 |
Q |
| |
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||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298507 |
cttatgttttggctcttcaagttaccgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4298408 |
T |
|
| Q |
228 |
ttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaat |
283 |
Q |
| |
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|||||||||| |||||||||||||||||||||| ||| ||| ||| ||||||||| |
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|
| T |
4298407 |
ttttatcaaatcttgggcttacctatgtagaaatattggaaaggaaatatctgaat |
4298352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 4285111 - 4285054
Alignment:
| Q |
241 |
tgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcaccccttt |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
4285111 |
tgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcaccccttt |
4285054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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