View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_17 (Length: 311)
Name: NF5953_low_17
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 4293431 - 4293697
Alignment:
| Q |
17 |
acaatgggcctcaaattcattgtgaggttaattaatggaaagtaatacacacaatattaagctcaaagtgagggaaagggattgtttgagtttgggaaga |
116 |
Q |
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| T |
4293431 |
acaatgggcctcaaattcattgtgaggttaattaatggaaagtaatacacacaatattaagctcaaagtgagggaaagggattgtttgagtttgggaaga |
4293530 |
T |
|
| Q |
117 |
agggtattgaagaaaagtgaggtttggtgtgaaaattcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagag |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4293531 |
agggtattgaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagag |
4293630 |
T |
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| Q |
217 |
gaagtgatgtttctgaaggaagttcttcttgtgaagatggtgatacattgaaaatttctatgatttt |
283 |
Q |
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| T |
4293631 |
gaagtgatgtttctgaaggtagttctacttgtgatgatggttctacattgaaaatttctatgatttt |
4293697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 89 - 294
Target Start/End: Complemental strand, 4265588 - 4265383
Alignment:
| Q |
89 |
ggaaagggattgtttgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtgaaaattcatagaagaaaattctttgaacaggtggtaatctt |
188 |
Q |
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| T |
4265588 |
ggaaagtgattttttgagtttgggaagaagggtgttgtagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaactggtggtaatctt |
4265489 |
T |
|
| Q |
189 |
aaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatggtgatacattgaaaatttctatgattttagaca |
288 |
Q |
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| T |
4265488 |
aaccataatatgtccaagaaagtaagaggaagtgatgtttctaaaggaagttcttcctgtgaagatggtgatacattgaaaatttctatgattttagaca |
4265389 |
T |
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| Q |
289 |
tttctt |
294 |
Q |
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|||||| |
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| T |
4265388 |
tttctt |
4265383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 90 - 283
Target Start/End: Original strand, 4290136 - 4290329
Alignment:
| Q |
90 |
gaaagggattgtttgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtgaaaattcatagaagaaaattctttgaacaggtggtaatctta |
189 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4290136 |
gaaagagattgtttgagtttgggaagaagggtatttaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctta |
4290235 |
T |
|
| Q |
190 |
accataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatggtgatacattgaaaatttctatgatttt |
283 |
Q |
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| T |
4290236 |
accataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatggtgctacattgaaaatttctatgatttt |
4290329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 89 - 284
Target Start/End: Complemental strand, 4260042 - 4259847
Alignment:
| Q |
89 |
ggaaagggattgtttgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtgaaaattcatagaagaaaattctttgaacaggtggtaatctt |
188 |
Q |
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|||||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
4260042 |
ggaaagtgattttttgagtttgggaagaagggttttgaagaaaaatgaggtttggtgtggaaactcatagaagaaaattctttgaacaggtggtaatctt |
4259943 |
T |
|
| Q |
189 |
aaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatggtgatacattgaaaatttctatgatttta |
284 |
Q |
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| T |
4259942 |
aaccatagtatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgaagatggtgctacattgaaaatttctatgatttta |
4259847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 4258420 - 4258573
Alignment:
| Q |
90 |
gaaagggattgtttgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtgaaaattcatagaagaaaattctttgaacaggtggtaatctta |
189 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4258420 |
gaaagggattgattgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctta |
4258519 |
T |
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| Q |
190 |
accataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttctt |
243 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4258520 |
accatagtatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttctt |
4258573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 4303509 - 4303595
Alignment:
| Q |
205 |
agaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatggtgatacattgaaaatttctatgattttagacattt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4303509 |
agaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatggtgatacattgaaaatttctataattttagacattt |
4303595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 4300184 - 4300306
Alignment:
| Q |
89 |
ggaaagggattgtttgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtgaaaattcatagaagaaaattctttgaacaggtggtaatctt |
188 |
Q |
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|||||| |||| ||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||| || ||||| | |||||||||||| |
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| T |
4300184 |
ggaaagtgattttttgagtttgggaagaagggtgttgaggaaaagtgtggtttggtgtggaaattcatagaagaaatttttttgacctggtggtaatctt |
4300283 |
T |
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| Q |
189 |
aaccataatatgtcaaagaaagt |
211 |
Q |
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||||||| ||||||||||||||| |
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| T |
4300284 |
aaccatagtatgtcaaagaaagt |
4300306 |
T |
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