View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_19 (Length: 275)
Name: NF5953_low_19
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 29364949 - 29364675
Alignment:
| Q |
1 |
tactagtccaactaattcttttcgctcgtaaagatcccatgtctgtaagaacaaaagtttagattagagtaggtctagaaatctcatatcatgctttaga |
100 |
Q |
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| T |
29364949 |
tactagtccaactaattcctttcgctcgtaaagatcccatgtctgtaagaacaaaagtttagattagagtaggtctagaaatctcatatcatgctttaga |
29364850 |
T |
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| Q |
101 |
gtatgatcattcttatcaaatgaaatgccaaagtctatacaaaaatgatttaattcatatacactattaatgtaaaaaagtttacattggccatcaatca |
200 |
Q |
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| T |
29364849 |
gtacgatcattcttatcaaatgaaatgccaaagcctatacaaaaatgatttaattcgtatacactattaatgtaaaaaagtttacattgcccatcaatca |
29364750 |
T |
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| Q |
201 |
caatcgtgatatcatgaataacatttgacttcaattaaactgcttttaaaatcacacgtatcagtgagtagagat |
275 |
Q |
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| T |
29364749 |
caatcgtgatatcatgaaaaacatttgacttcaattaaactgcttttaaaatcacacgtatcagtgaatagagat |
29364675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 29357851 - 29357613
Alignment:
| Q |
5 |
agtccaactaattcttttcgctcgtaaagatcccatgtctgtaagaacaaaagtttagat--tagagtaggtctagaaatctcatatcatgctttagagt |
102 |
Q |
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| T |
29357851 |
agtccaactaattcctttcgctcgtaaagttcccatgtctgtaagaataaaagtttagataatagtgtaggtctagaaatttcagataattctttagagt |
29357752 |
T |
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| Q |
103 |
atgatcattcttatcaaatgaaat----gccaaagtctatacaaaaatgatttaattcatatacactattaatgtaaaaaagtttacattggccatcaat |
198 |
Q |
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| T |
29357751 |
atgatcattcttatcaaatgaaatattatgcaaagcttatacaacaaagattttattcaaatacactgtcagtgtaaaaaaaattatgttgtcaatcaat |
29357652 |
T |
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| Q |
199 |
cacaatcgtgatatcatgaataacatttgacttcaatta |
237 |
Q |
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| T |
29357651 |
cataatcgtgacatcttgaaaaacattggaattcaatta |
29357613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 35523623 - 35523678
Alignment:
| Q |
148 |
atttaattcatatacactattaatgtaaaaaagtttacattggccatcaatcacaa |
203 |
Q |
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| T |
35523623 |
atttaattcatatacattgttaatgtaaaaaagtttacattatcaatcaatcacaa |
35523678 |
T |
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