View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5953_low_2 (Length: 584)
Name: NF5953_low_2
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 68 - 566
Target Start/End: Complemental strand, 386980 - 386486
Alignment:
| Q |
68 |
ggtggcacaattcctccgcttccaacactccaaatatgctattatagacaaatcgtatggcattctaaagcaggtttcacactagcagtatgttatttat |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386980 |
ggtggcacaattcctccgcttccaacactccaaatatgctattatagacaaatcgtatggcattctaaagcaggtttcacactagcagtatgttatttat |
386881 |
T |
|
| Q |
168 |
aaatgttaaagataaagcaaacattataaagttgtttttataagtcacttaaccaaagaagtaaagtaaatgttagatataataatccaaatatttagag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386880 |
aaatgttaaagataaagcaaacattataaagttgtttttataagtcacttaaccaaagaagtaaagtaaatgttagatataataatccaaatatttagag |
386781 |
T |
|
| Q |
268 |
atgaagcaaattgtatgacattcattctacaataaaaactaaaaatgctctttaaatcagaagtccaatgttgggtgctctttggccaaagtagacctca |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386780 |
atgaagcaaattgtatgacattcattctacaataaaaactaaaaatactctttaaatcagaagtccaatgttgggtgctctttggccaaagtagacctca |
386681 |
T |
|
| Q |
368 |
ccgttggaatgcctagacaagatagattttcacaattgaaaggccaagaacagcttgaaactgtgaagtaattgtttttaaaaaagccttgtgaggattt |
467 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386680 |
ccgttggaatgcctagaca----agattttcacaattgaaaggccaagaacagcttgaaactgtgaagtaattgtttttaaaaaagccttgtgaggattt |
386585 |
T |
|
| Q |
468 |
tccacaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttctttttaatttgaatctttgacacttttggacagataatt |
566 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386584 |
tcctcaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttctttttaatttgaatctttgacacttttggacagataatt |
386486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 393 - 514
Target Start/End: Complemental strand, 36926568 - 36926447
Alignment:
| Q |
393 |
attttcacaattgaaaggccaagaacagcttgaaactgtgaagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgag |
492 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||||||||||||| |||||||| | |||||| |||| ||||||||||| |||||| ||||| ||||||| |
|
|
| T |
36926568 |
atttccacaagtgaaagaccaagaacagcttgaaactgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgag |
36926469 |
T |
|
| Q |
493 |
ttcctatttcaggcatgagtcg |
514 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
36926468 |
ttcctttttcaggcatgagtcg |
36926447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 391 - 513
Target Start/End: Original strand, 49608236 - 49608358
Alignment:
| Q |
391 |
agattttcacaattgaaaggccaagaacagcttgaaactgtgaagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttg |
490 |
Q |
| |
|
||||||||| || ||||| | ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
49608236 |
agattttcaaaagtgaaatgtcaagaacagcttgaaactgtgaagtaattgtcttcaaaaaaggcttgtcaggattttccacaagttgattgtattcttg |
49608335 |
T |
|
| Q |
491 |
agttcctatttcaggcatgagtc |
513 |
Q |
| |
|
||| | | ||||||||||||||| |
|
|
| T |
49608336 |
agtccttttttcaggcatgagtc |
49608358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University