View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_20 (Length: 259)
Name: NF5953_low_20
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 4265746 - 4265971
Alignment:
| Q |
20 |
aagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatggatt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4265746 |
aagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctattttggctcttcaagttactctttttccaaactatggatt |
4265845 |
T |
|
| Q |
120 |
ttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4265846 |
ttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaaagcttgaaaatgaa |
4265945 |
T |
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| Q |
220 |
gtatctgaattagtatcacccctttg |
245 |
Q |
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||||||||||||| || ||||||||| |
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| T |
4265946 |
gtatctgaattagaattacccctttg |
4265971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 4289977 - 4289752
Alignment:
| Q |
20 |
aagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatggatt |
119 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
4289977 |
aagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctgttttggctcttcaagttaccatttttccaaactatggatt |
4289878 |
T |
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| Q |
120 |
ttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4289877 |
ttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaaagcttgaaaatgaa |
4289778 |
T |
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| Q |
220 |
gtatctgaattagtatcacccctttg |
245 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4289777 |
gtatctgaattagtatcacccctttg |
4289752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 4260200 - 4260425
Alignment:
| Q |
20 |
aagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatggatt |
119 |
Q |
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|||||| ||| ||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
4260200 |
aagctacacagattcatgattttttacctaacttgaatatttctcatgatcaagcttcttttttggctcttcaagttactttttttccaaactatggatt |
4260299 |
T |
|
| Q |
120 |
ttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
4260300 |
ttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaaagcttgaaattgaa |
4260399 |
T |
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| Q |
220 |
gtatctgaattagtatcacccctttg |
245 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
4260400 |
gtatctgaattagtattacccctttg |
4260425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 4298561 - 4298352
Alignment:
| Q |
20 |
aagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatggatt |
119 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||| |
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| T |
4298561 |
aagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttatgttttggctcttcaagttaccgtttttccaaactatggatt |
4298462 |
T |
|
| Q |
120 |
ttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||| |
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| T |
4298461 |
ttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaaatattggaaaggaa |
4298362 |
T |
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| Q |
220 |
gtatctgaat |
229 |
Q |
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||||||||| |
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| T |
4298361 |
atatctgaat |
4298352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 4285240 - 4285109
Alignment:
| Q |
27 |
acaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatggattttcaatt |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4285240 |
acaaattcatgatcttttacctaacttgaatatttcacatgatcaagctactgttttggctcttcaagttactgtttttccaaactatggattttcaatg |
4285141 |
T |
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| Q |
127 |
ggtattacttcacatcatgctgttttagatgg |
158 |
Q |
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|| ||||||||||||||||||||||||||||| |
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| T |
4285140 |
ggcattacttcacatcatgctgttttagatgg |
4285109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 4285111 - 4285054
Alignment:
| Q |
187 |
tgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcaccccttt |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
4285111 |
tgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcaccccttt |
4285054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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