View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5953_low_25 (Length: 251)

Name: NF5953_low_25
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5953_low_25
NF5953_low_25
[»] chr1 (2 HSPs)
chr1 (16-175)||(39367326-39367483)
chr1 (177-251)||(39366547-39366621)
[»] chr2 (2 HSPs)
chr2 (16-125)||(7703194-7703302)
chr2 (16-175)||(27150442-27150595)
[»] chr7 (3 HSPs)
chr7 (16-56)||(26618446-26618486)
chr7 (16-56)||(26620418-26620458)
chr7 (16-56)||(26607880-26607920)
[»] chr4 (3 HSPs)
chr4 (16-125)||(24558278-24558378)
chr4 (16-56)||(37744388-37744428)
chr4 (20-57)||(21318401-21318438)
[»] chr5 (1 HSPs)
chr5 (16-56)||(31571636-31571676)
[»] chr3 (1 HSPs)
chr3 (16-56)||(25338450-25338490)
[»] chr8 (1 HSPs)
chr8 (20-56)||(6224088-6224124)
[»] chr6 (1 HSPs)
chr6 (16-56)||(24631556-24631596)


Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 39367483 - 39367326
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaattaaaggaaggacatcctcttatattgttatattccctgagaataaaatcaatcctacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39367483 atcctattgatttaagtgttgctactttctgaacagaggaattaaaggaaggacatcctcttatattgttatattccctgagaataaaatcaatcctacc 39367384  T
Q  116 atatcctaagaaagaaagnnnnnnntcatatagattcacaattacaacacaacataacat 175  Q
    |||||||||| || |||        |||||||||||||||||||| ||||||||||||||    
T  39367383 atatcctaagcaaaaaa--aaaaaatcatatagattcacaattaccacacaacataacat 39367326  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 39366621 - 39366547
Alignment:
Q  177 ctctctttagacttgggaatttatgcatatttttatttcctttgctttcttgtcttcatttagattgtccatgaa 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39366621 ctctctttagacttgggaatttatgcatatttttatttcctttgctttcttgtcttcatttagattgtccatgaa 39366547  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 7703194 - 7703302
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaattaaaggaaggacatcctcttatattgttatattccctgagaataaaatcaatcctacc 115  Q
    ||||||||||||||| |||| |||||||||||| ||| |||  | ||||||||| |||||| ||||||||||||| ||||||| ||||| ||||||||||    
T  7703194 atcctattgatttaaatgtttctactttctgaagagaagaag-agaggaaggacttcctctgatattgttatatttcctgagagtaaaaccaatcctacc 7703292  T
Q  116 atatcctaag 125  Q
    ||||||||||    
T  7703293 atatcctaag 7703302  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 27150595 - 27150442
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaattaaaggaaggacatcctcttatattgttatattccctgagaataaaatcaatcctacc 115  Q
    ||||||||||||||||||||| || ||||||||||||||||    ||||||||| |||||| | |||||||||||||  |||| ||||| ||||||||||    
T  27150595 atcctattgatttaagtgttgttaatttctgaacagaggaa-cggaggaaggacttcctctga-attgttatattccaagagagtaaaaccaatcctacc 27150498  T
Q  116 atatcctaagaaagaaagnnnnnnntcatatagattcacaattacaacacaacataacat 175  Q
    |||||||||| |  |||        |||||||||||||||||||| |||||||| |||||    
T  27150497 atatcctaagcacaaaa----aacatcatatagattcacaattaccacacaacagaacat 27150442  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 26618486 - 26618446
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26618486 atcctattgatttaagtgttgctactttctgaacagaggaa 26618446  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 26620458 - 26620418
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaa 56  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  26620458 atcctattgatttaagtgttgctactttatgaacagaggaa 26620418  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 26607920 - 26607880
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaa 56  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  26607920 atcctattgatttaagtgttgctacttccagaacagaggaa 26607880  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 24558378 - 24558278
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaattaaaggaaggacatcctcttatattgttatattccctgagaataaaatcaatcctacc 115  Q
    |||||||| |||||||||||||||||||||||| ||||| ||         ||| |||||| ||||||||||||||||||| | || |  ||||||||||    
T  24558378 atcctattaatttaagtgttgctactttctgaatagaggcat---------gacttcctctgatattgttatattccctgaaagtatagccaatcctacc 24558288  T
Q  116 atatcctaag 125  Q
    ||||||||||    
T  24558287 atatcctaag 24558278  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 37744428 - 37744388
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaa 56  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  37744428 atccaattgatttaagtgttgctactttctgaagagaggaa 37744388  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 21318401 - 21318438
Alignment:
Q  20 tattgatttaagtgttgctactttctgaacagaggaat 57  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  21318401 tattgatttaattgttgctattttctgaacagaggaat 21318438  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 31571636 - 31571676
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaa 56  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  31571636 atcctattgatttaagtgttgccactttctgaacagaggaa 31571676  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 25338490 - 25338450
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaa 56  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  25338490 atcctattgatttaagtgttgctactttctaaacagaggaa 25338450  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 6224088 - 6224124
Alignment:
Q  20 tattgatttaagtgttgctactttctgaacagaggaa 56  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6224088 tattgatttaagtgttgctactttttgaacagaggaa 6224124  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 24631596 - 24631556
Alignment:
Q  16 atcctattgatttaagtgttgctactttctgaacagaggaa 56  Q
    |||||||||||| ||||||||| |||||||||| |||||||    
T  24631596 atcctattgattcaagtgttgcaactttctgaaaagaggaa 24631556  T

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